Select genomic region:
Overview
4.1
10.1
23.1
26.1
35.1
36.1
40.1
41.1
51.1

### Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_4)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | Rnf_complex | E-MGC | 97,595 | 122,923 | Rnf complex C. sporogenes | RNF | 83%

c00010_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_10)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | fatty_acids-unassigned | Putative | 12,808 | 41,521 |

c00023_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_23)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 23.1 | porA | SCFA | 30,989 | 53,635 | porA C. sporogenes | POR | 60%

c00026_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_26)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 26.1 | Arginine2_Hcarbonate | Other | 1 | 2,397 | Arginine to hydrogen carbonate P. aeruginosa | ARG | 66%

c00035_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_35)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 35.1 | TPP_AA_metabolism | Putative | 93,432 | 121,765 |

c00036_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_36)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 36.1 | Fumarate2succinate | SCFA | 19,904 | 43,364 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%

c00040_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_40)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 40.1 | Pyruvate2acetate-formate | SCFA | 13,449 | 36,498 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

c00041_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_41)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 41.1 | Putrescine2spermidine | Aliphatic_amine | 27,418 | 41,822 | Arginine2putrescine R. gnavus | PUTR | 40%

c00051_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_51)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 51.1 | OD_fatty_acids | Putative | 74,267 | 99,066 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | Rnf_complex | E-MGC | 97,595 | 122,923 | Rnf complex C. sporogenes | RNF | 83%
Region 10.1 | fatty_acids-unassigned | Putative | 12,808 | 41,521 |
Region 23.1 | porA | SCFA | 30,989 | 53,635 | porA C. sporogenes | POR | 60%
Region 26.1 | Arginine2_Hcarbonate | Other | 1 | 2,397 | Arginine to hydrogen carbonate P. aeruginosa | ARG | 66%
Region 35.1 | TPP_AA_metabolism | Putative | 93,432 | 121,765 |
Region 36.1 | Fumarate2succinate | SCFA | 19,904 | 43,364 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%
Region 40.1 | Pyruvate2acetate-formate | SCFA | 13,449 | 36,498 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 41.1 | Putrescine2spermidine | Aliphatic_amine | 27,418 | 41,822 | Arginine2putrescine R. gnavus | PUTR | 40%
Region 51.1 | OD_fatty_acids | Putative | 74,267 | 99,066 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_3)
  c00005_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_9)
  c00011_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_22)
  c00024_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_25)
  c00027_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_34)
  c00037_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_39)
  c00042_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_50)
  c00052_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_54)

Compact view
c00004_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 97,595 - 122,923 nt. (total: 25,329 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00010_gnlPro.. - Region 1 - fatty_acids-unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 12,808 - 41,521 nt. (total: 28,714 nt) Show pHMM detection rules used
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00023_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 30,989 - 53,635 nt. (total: 22,647 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00026_gnlPro.. - Region 1 - Arginine2_Hcarbonate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 2,397 nt. (total: 2,397 nt) Show pHMM detection rules used
Region on contig edge.
Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00035_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 93,432 - 121,765 nt. (total: 28,334 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00036_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 19,904 - 43,364 nt. (total: 23,461 nt) Show pHMM detection rules used
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00040_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 13,449 - 36,498 nt. (total: 23,050 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00041_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 27,418 - 41,822 nt. (total: 14,405 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00051_gnlPro.. - Region 1 - OD_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 74,267 - 99,066 nt. (total: 24,800 nt) Show pHMM detection rules used
OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.