GCA_004558275.1 - 9 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	97,595	122,923	Rnf complex C. sporogenes	RNF	83%

c00010_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	fatty_acids-unassigned	Putative	12,808	41,521

c00023_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	porA	SCFA	30,989	53,635	porA C. sporogenes	POR	60%

c00026_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_26)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Arginine2_Hcarbonate	Other	1	2,397	Arginine to hydrogen carbonate P. aeruginosa	ARG	66%

c00035_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	TPP_AA_metabolism	Putative	93,432	121,765

c00036_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	Fumarate2succinate	SCFA	19,904	43,364	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00040_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Pyruvate2acetate-formate	SCFA	13,449	36,498	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00041_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	Putrescine2spermidine	Aliphatic_amine	27,418	41,822	Arginine2putrescine R. gnavus	PUTR	40%

c00051_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_51)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	OD_fatty_acids	Putative	74,267	99,066

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_1); c00002_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_2); c00003_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_3); c00005_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_5); c00006_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_6); c00007_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_7); c00008_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_8); c00009_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_9); c00011_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_11); c00012_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_12); c00013_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_13); c00014_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_14); c00015_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_15); c00016_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_16); c00017_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_17); c00018_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_18); c00019_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_19); c00020_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_20); c00021_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_21); c00022_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_22); c00024_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_24); c00025_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_25); c00027_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_27); c00028_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_28); c00029_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_29); c00030_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_30); c00031_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_31); c00032_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_32); c00033_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_33); c00034_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_34); c00037_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_37); c00038_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_38); c00039_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_39); c00042_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_42); c00043_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_43); c00044_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_44); c00045_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_45); c00046_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_46); c00047_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_47); c00048_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_48); c00049_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_49); c00050_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_50); c00052_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_52); c00053_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_53); c00054_gnlPro.. (original name was: gnl|Prokka|JFLGNBBN_54)

Compact view

c00004_gnlPro.. - Region 1 - Rnf_complex

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Location: 97,595 - 122,923 nt. (total: 25,329 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00010_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 12,808 - 41,521 nt. (total: 28,714 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

c00023_gnlPro.. - Region 1 - porA

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Location: 30,989 - 53,635 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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resistance genes

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KnownClusterBlast

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c00026_gnlPro.. - Region 1 - Arginine2_Hcarbonate

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Location: 1 - 2,397 nt. (total: 2,397 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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core biosynthetic genes

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resistance genes

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c00035_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 93,432 - 121,765 nt. (total: 28,334 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

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c00036_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 19,904 - 43,364 nt. (total: 23,461 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00040_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 13,449 - 36,498 nt. (total: 23,050 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00041_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 27,418 - 41,822 nt. (total: 14,405 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00051_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 74,267 - 99,066 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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