GCA_008416365.1 - 8 region(s)

Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Rnf_complex	E-MGC	57,241	82,356	Rnf complex C. sporogenes	RNF	83%

c00016_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	OD_fatty_acids	Putative	49,245	74,044

c00026_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_26)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	porA	SCFA	29,221	51,867	porA C. sporogenes	POR	60%

c00027_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	TPP_AA_metabolism	Putative	22,913	51,258

c00046_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	succinate2propionate	SCFA	1	21,446	Succinate to propionate A. sp. KLE1797	SUC	57%

c00068_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_68)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	Fumarate2succinate	SCFA	211,003	234,463	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00089_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_89)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 89.1	NADH_dehydrogenase_I	E-MGC	71,079	101,073	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00099_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_99)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 99.1	Putrescine2spermidine	Aliphatic_amine	88,851	111,608	Arginine2putrescine R. gnavus	PUTR	40%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_1); c00002_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_2); c00003_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_3); c00004_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_4); c00005_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_5); c00006_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_6); c00007_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_7); c00008_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_8); c00010_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_10); c00011_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_11); c00012_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_12); c00013_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_13); c00014_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_14); c00015_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_15); c00017_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_17); c00018_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_18); c00019_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_19); c00020_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_20); c00021_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_21); c00022_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_22); c00023_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_23); c00024_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_24); c00025_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_25); c00028_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_28); c00029_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_29); c00030_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_30); c00031_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_31); c00032_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_32); c00033_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_33); c00034_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_34); c00035_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_35); c00036_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_36); c00037_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_37); c00038_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_38); c00039_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_39); c00040_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_40); c00041_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_41); c00042_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_42); c00043_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_43); c00044_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_44); c00045_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_45); c00047_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_47); c00048_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_48); c00049_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_49); c00050_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_50); c00051_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_51); c00052_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_52); c00053_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_53); c00054_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_54); c00055_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_55); c00056_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_56); c00057_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_57); c00058_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_58); c00059_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_59); c00060_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_60); c00061_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_61); c00062_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_62); c00063_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_63); c00064_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_64); c00065_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_65); c00066_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_66); c00067_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_67); c00069_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_69); c00070_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_70); c00071_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_71); c00072_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_72); c00073_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_73); c00074_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_74); c00075_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_75); c00076_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_76); c00077_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_77); c00078_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_78); c00079_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_79); c00080_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_80); c00081_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_81); c00082_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_82); c00083_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_83); c00084_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_84); c00085_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_85); c00086_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_86); c00087_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_87); c00088_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_88); c00090_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_90); c00091_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_91); c00092_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_92); c00093_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_93); c00094_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_94); c00095_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_95); c00096_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_96); c00097_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_97); c00098_gnlPro.. (original name was: gnl|Prokka|HCOIFFNI_98)

Compact view

c00009_gnlPro.. - Region 1 - Rnf_complex

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Location: 57,241 - 82,356 nt. (total: 25,116 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00016_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 49,245 - 74,044 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

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transport-related genes

regulatory genes

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No matches found.

c00026_gnlPro.. - Region 1 - porA

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Location: 29,221 - 51,867 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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c00027_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 22,913 - 51,258 nt. (total: 28,346 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00046_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 21,446 nt. (total: 21,446 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00068_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 211,003 - 234,463 nt. (total: 23,461 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00089_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 71,079 - 101,073 nt. (total: 29,995 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00099_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 88,851 - 111,608 nt. (total: 22,758 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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