Select genomic region:
Overview
13.1
21.1
28.1
45.1
64.1
66.1
84.1

### Identified primary metabolite regions

c00013_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_13)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | Pyruvate2acetate-formate | SCFA | 66,525 | 89,550 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

c00021_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_21)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 21.1 | TPP_AA_metabolism | Putative | 1,575 | 18,119 |

c00028_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_28)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 28.1 | NADH_dehydrogenase_I | E-MGC | 200,521 | 230,390 | NADH dehydrogenase I Bacteroides sp. | NADHD | 66%

c00045_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_45)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 45.1 | porA | SCFA | 10,556 | 33,393 | porA C. sporogenes | POR | 60%

c00064_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_64)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 64.1 | fatty_acids-unassigned | Putative | 118,191 | 140,870 |

c00066_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_66)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 66.1 | TPP_fatty_acids | Putative | 58,572 | 82,639 |

c00084_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_84)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 84.1 | PFOR_II_pathway | SCFA | 100,190 | 123,735 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | Pyruvate2acetate-formate | SCFA | 66,525 | 89,550 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 21.1 | TPP_AA_metabolism | Putative | 1,575 | 18,119 |
Region 28.1 | NADH_dehydrogenase_I | E-MGC | 200,521 | 230,390 | NADH dehydrogenase I Bacteroides sp. | NADHD | 66%
Region 45.1 | porA | SCFA | 10,556 | 33,393 | porA C. sporogenes | POR | 60%
Region 64.1 | fatty_acids-unassigned | Putative | 118,191 | 140,870 |
Region 66.1 | TPP_fatty_acids | Putative | 58,572 | 82,639 |
Region 84.1 | PFOR_II_pathway | SCFA | 100,190 | 123,735 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_12)
  c00014_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_20)
  c00022_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_27)
  c00029_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_44)
  c00046_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_63)
  c00065_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_65)
  c00067_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|KFBDJDML_83)

Compact view
c00013_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 66,525 - 89,550 nt. (total: 23,026 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00021_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,575 - 18,119 nt. (total: 16,545 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00028_gnlPro.. - Region 1 - NADH_dehydrogenase_I
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 200,521 - 230,390 nt. (total: 29,870 nt) Show pHMM detection rules used
NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00045_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 10,556 - 33,393 nt. (total: 22,838 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00064_gnlPro.. - Region 1 - fatty_acids-unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 118,191 - 140,870 nt. (total: 22,680 nt) Show pHMM detection rules used
Region on contig edge.
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00066_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 58,572 - 82,639 nt. (total: 24,068 nt) Show pHMM detection rules used
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00084_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 100,190 - 123,735 nt. (total: 23,546 nt) Show pHMM detection rules used
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.