Select genomic region:
Overview
10.1
16.1
47.1
61.1
75.1
118.1
130.1
135.1
138.1
144.1
171.1
172.1
187.1

### Identified primary metabolite regions

c00010_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_10)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | Others_HGD_unassigned | Putative | 20,347 | 33,582 |

c00016_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_16)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 16.1 | Fumarate2succinate | SCFA | 1 | 7,459 |

c00047_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_47)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 47.1 | Fumarate2succinate | SCFA | 1 | 14,532 |

c00061_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_61)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 61.1 | TPP_AA_metabolism | Putative | 1 | 12,812 |

c00075_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_75)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 75.1 | Rnf_complex | E-MGC | 1 | 15,196 | Rnf complex C. sporogenes | RNF | 100%

c00118_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_118)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 118.1 | Acetyl-CoA_pathway | SCFA | 1 | 23,150 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 57%

c00130_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_130)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 130.1 | PFOR_II_pathway | SCFA | 12,978 | 35,177 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00135_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_135)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 135.1 | Putrescine2spermidine | Aliphatic_amine | 31,896 | 49,862 | Putrescine2spermidine E. rectale | SPRM | 100%

c00138_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_138)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 138.1 | GR_eut-pdu-related | Putative | 1 | 17,254 | Propanediol degradation S. enterica | PDU | 33%

c00144_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_144)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 144.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 9,119 | 40,434 |

c00171_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_171)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 171.1 | succinate2propionate | SCFA | 1,844 | 27,049 | Succinate to propionate B. theta | PRO | 33%

c00172_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_172)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 172.1 | Pyruvate2acetate-formate | SCFA | 1 | 9,488 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00187_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_187)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 187.1 | Rnf_complex | E-MGC | 1 | 18,667 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | Others_HGD_unassigned | Putative | 20,347 | 33,582 |
Region 16.1 | Fumarate2succinate | SCFA | 1 | 7,459 |
Region 47.1 | Fumarate2succinate | SCFA | 1 | 14,532 |
Region 61.1 | TPP_AA_metabolism | Putative | 1 | 12,812 |
Region 75.1 | Rnf_complex | E-MGC | 1 | 15,196 | Rnf complex C. sporogenes | RNF | 100%
Region 118.1 | Acetyl-CoA_pathway | SCFA | 1 | 23,150 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 57%
Region 130.1 | PFOR_II_pathway | SCFA | 12,978 | 35,177 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 135.1 | Putrescine2spermidine | Aliphatic_amine | 31,896 | 49,862 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 138.1 | GR_eut-pdu-related | Putative | 1 | 17,254 | Propanediol degradation S. enterica | PDU | 33%
Region 144.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 9,119 | 40,434 |
Region 171.1 | succinate2propionate | SCFA | 1,844 | 27,049 | Succinate to propionate B. theta | PRO | 33%
Region 172.1 | Pyruvate2acetate-formate | SCFA | 1 | 9,488 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 187.1 | Rnf_complex | E-MGC | 1 | 18,667 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_9)
  c00011_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_15)
  c00017_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_46)
  c00048_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_60)
  c00062_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_74)
  c00076_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_117)
  c00119_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_129)
  c00131_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_134)
  c00136_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_137)
  c00139_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_143)
  c00145_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_170)
  c00173_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_177)
  c00178_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_178)
  c00179_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_179)
  c00180_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_180)
  c00181_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_181)
  c00182_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_182)
  c00183_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_183)
  c00184_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_184)
  c00185_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_185)
  c00186_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_186)
  c00188_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_188)
  c00189_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_189)
  c00190_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_190)
  c00191_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_191)
  c00192_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_192)
  c00193_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_193)
  c00194_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_194)
  c00195_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_195)
  c00196_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_196)
  c00197_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_197)
  c00198_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_198)
  c00199_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_199)
  c00200_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_200)
  c00201_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_201)
  c00202_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_202)
  c00203_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_203)
  c00204_gnlPro.. (original name was: gnl|Prokka|FPNDBBIJ_204)

Compact view
c00010_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 20,347 - 33,582 nt. (total: 13,236 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00016_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 7,459 nt. (total: 7,459 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00047_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,532 nt. (total: 14,532 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00061_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 12,812 nt. (total: 12,812 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00075_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 15,196 nt. (total: 15,196 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00118_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,150 nt. (total: 23,150 nt) Show pHMM detection rules used
Region on contig edge.
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00130_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 12,978 - 35,177 nt. (total: 22,200 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00135_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 31,896 - 49,862 nt. (total: 17,967 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00138_gnlPro.. - Region 1 - GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 17,254 nt. (total: 17,254 nt) Show pHMM detection rules used
Region on contig edge.
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00144_gnlPro.. - Region 1 - Others_HGD_unassigned,TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 9,119 - 40,434 nt. (total: 31,316 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00171_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,844 - 27,049 nt. (total: 25,206 nt) Show pHMM detection rules used
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00172_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 9,488 nt. (total: 9,488 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00187_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 18,667 nt. (total: 18,667 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.