Select genomic region:
Overview
21.1
32.1
72.1
77.1
84.1
89.1
110.1
117.1
121.1

### Identified primary metabolite regions

c00021_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_21)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 21.1 | TPP_AA_metabolism | Putative | 1 | 15,109 |

c00032_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_32)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 32.1 | Others_HGD_unassigned | Putative | 1,210 | 14,479 |

c00072_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_72)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 72.1 | Acetyl-CoA_pathway | SCFA | 1,719 | 24,949 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 57%

c00077_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_77)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 77.1 | Pyruvate2acetate-formate | SCFA | 28,514 | 44,237 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00084_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_84)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 84.1 | PFOR_II_pathway | SCFA | 12,978 | 35,244 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00089_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_89)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 89.1 | succinate2propionate | SCFA | 6,245 | 31,450 | Succinate to propionate B. theta | PRO | 33%

c00110_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_110)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 110.1 | Fumarate2succinate | SCFA | 1 | 4,898 |

c00117_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_117)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 117.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 46,487 | 77,413 |

c00121_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_121)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 121.1 | Rnf_complex | E-MGC | 1 | 15,092 | Rnf complex C. sporogenes | RNF | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 21.1 | TPP_AA_metabolism | Putative | 1 | 15,109 |
Region 32.1 | Others_HGD_unassigned | Putative | 1,210 | 14,479 |
Region 72.1 | Acetyl-CoA_pathway | SCFA | 1,719 | 24,949 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 57%
Region 77.1 | Pyruvate2acetate-formate | SCFA | 28,514 | 44,237 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 84.1 | PFOR_II_pathway | SCFA | 12,978 | 35,244 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 89.1 | succinate2propionate | SCFA | 6,245 | 31,450 | Succinate to propionate B. theta | PRO | 33%
Region 110.1 | Fumarate2succinate | SCFA | 1 | 4,898 |
Region 117.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 46,487 | 77,413 |
Region 121.1 | Rnf_complex | E-MGC | 1 | 15,092 | Rnf complex C. sporogenes | RNF | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_20)
  c00022_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_31)
  c00033_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_71)
  c00073_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_76)
  c00078_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_83)
  c00085_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_88)
  c00090_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_109)
  c00111_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_116)
  c00118_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_120)
  c00122_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|NODIPJOO_144)

Compact view
c00021_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 15,109 nt. (total: 15,109 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00032_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,210 - 14,479 nt. (total: 13,270 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00072_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,719 - 24,949 nt. (total: 23,231 nt) Show pHMM detection rules used
Region on contig edge.
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00077_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 28,514 - 44,237 nt. (total: 15,724 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00084_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 12,978 - 35,244 nt. (total: 22,267 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00089_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,245 - 31,450 nt. (total: 25,206 nt) Show pHMM detection rules used
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00110_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 4,898 nt. (total: 4,898 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00117_gnlPro.. - Region 1 - Others_HGD_unassigned,TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 46,487 - 77,413 nt. (total: 30,927 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00121_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 15,092 nt. (total: 15,092 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.