GCA_008672595.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGAGFMGDE_62 (original name was: gnl|Prokka|GAGFMGDE_62)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	lanthipeptide-class-ii	1	4,385

gnlProkkaGAGFMGDE_97 (original name was: gnl|Prokka|GAGFMGDE_97)

Region	Type	From	To	Most similar known cluster		Similarity
Region 97.1	cyclic-lactone-autoinducer	1	15,841

gnlProkkaGAGFMGDE_109 (original name was: gnl|Prokka|GAGFMGDE_109)

Region	Type	From	To	Most similar known cluster		Similarity
Region 109.1	ranthipeptide	1	13,781

gnlProkkaGAGFMGDE_160 (original name was: gnl|Prokka|GAGFMGDE_160)

Region	Type	From	To	Most similar known cluster		Similarity
Region 160.1	NRPS	20,501	56,592	dipeptide aldehydes	NRP	47%

Region	Type	From	To	Most similar known cluster	Similarity
Region 62.1	lanthipeptide-class-ii	1	4,385
Region 97.1	cyclic-lactone-autoinducer	1	15,841
Region 109.1	ranthipeptide	1	13,781
Region 160.1	NRPS	20,501	56,592	dipeptide aldehydes	NRP	47%

No secondary metabolite regions were found in these records:: gnlProkkaGAGFMGDE_1 (original name was: gnl|Prokka|GAGFMGDE_1); gnlProkkaGAGFMGDE_2 (original name was: gnl|Prokka|GAGFMGDE_2); gnlProkkaGAGFMGDE_3 (original name was: gnl|Prokka|GAGFMGDE_3); gnlProkkaGAGFMGDE_4 (original name was: gnl|Prokka|GAGFMGDE_4); gnlProkkaGAGFMGDE_5 (original name was: gnl|Prokka|GAGFMGDE_5); gnlProkkaGAGFMGDE_6 (original name was: gnl|Prokka|GAGFMGDE_6); gnlProkkaGAGFMGDE_7 (original name was: gnl|Prokka|GAGFMGDE_7); gnlProkkaGAGFMGDE_8 (original name was: gnl|Prokka|GAGFMGDE_8); gnlProkkaGAGFMGDE_9 (original name was: gnl|Prokka|GAGFMGDE_9); gnlProkkaGAGFMGDE_10 (original name was: gnl|Prokka|GAGFMGDE_10); gnlProkkaGAGFMGDE_11 (original name was: gnl|Prokka|GAGFMGDE_11); gnlProkkaGAGFMGDE_12 (original name was: gnl|Prokka|GAGFMGDE_12); gnlProkkaGAGFMGDE_13 (original name was: gnl|Prokka|GAGFMGDE_13); gnlProkkaGAGFMGDE_14 (original name was: gnl|Prokka|GAGFMGDE_14); gnlProkkaGAGFMGDE_15 (original name was: gnl|Prokka|GAGFMGDE_15); gnlProkkaGAGFMGDE_16 (original name was: gnl|Prokka|GAGFMGDE_16); gnlProkkaGAGFMGDE_17 (original name was: gnl|Prokka|GAGFMGDE_17); gnlProkkaGAGFMGDE_18 (original name was: gnl|Prokka|GAGFMGDE_18); gnlProkkaGAGFMGDE_19 (original name was: gnl|Prokka|GAGFMGDE_19); gnlProkkaGAGFMGDE_20 (original name was: gnl|Prokka|GAGFMGDE_20); gnlProkkaGAGFMGDE_21 (original name was: gnl|Prokka|GAGFMGDE_21); gnlProkkaGAGFMGDE_22 (original name was: gnl|Prokka|GAGFMGDE_22); gnlProkkaGAGFMGDE_23 (original name was: gnl|Prokka|GAGFMGDE_23); gnlProkkaGAGFMGDE_24 (original name was: gnl|Prokka|GAGFMGDE_24); gnlProkkaGAGFMGDE_25 (original name was: gnl|Prokka|GAGFMGDE_25); gnlProkkaGAGFMGDE_26 (original name was: gnl|Prokka|GAGFMGDE_26); gnlProkkaGAGFMGDE_27 (original name was: gnl|Prokka|GAGFMGDE_27); gnlProkkaGAGFMGDE_28 (original name was: gnl|Prokka|GAGFMGDE_28); gnlProkkaGAGFMGDE_29 (original name was: gnl|Prokka|GAGFMGDE_29); gnlProkkaGAGFMGDE_30 (original name was: gnl|Prokka|GAGFMGDE_30); gnlProkkaGAGFMGDE_31 (original name was: gnl|Prokka|GAGFMGDE_31); gnlProkkaGAGFMGDE_32 (original name was: gnl|Prokka|GAGFMGDE_32); gnlProkkaGAGFMGDE_33 (original name was: gnl|Prokka|GAGFMGDE_33); gnlProkkaGAGFMGDE_34 (original name was: gnl|Prokka|GAGFMGDE_34); gnlProkkaGAGFMGDE_35 (original name was: gnl|Prokka|GAGFMGDE_35); gnlProkkaGAGFMGDE_36 (original name was: gnl|Prokka|GAGFMGDE_36); gnlProkkaGAGFMGDE_37 (original name was: gnl|Prokka|GAGFMGDE_37); gnlProkkaGAGFMGDE_38 (original name was: gnl|Prokka|GAGFMGDE_38); gnlProkkaGAGFMGDE_39 (original name was: gnl|Prokka|GAGFMGDE_39); gnlProkkaGAGFMGDE_40 (original name was: gnl|Prokka|GAGFMGDE_40); gnlProkkaGAGFMGDE_41 (original name was: gnl|Prokka|GAGFMGDE_41); gnlProkkaGAGFMGDE_42 (original name was: gnl|Prokka|GAGFMGDE_42); gnlProkkaGAGFMGDE_43 (original name was: gnl|Prokka|GAGFMGDE_43); gnlProkkaGAGFMGDE_44 (original name was: gnl|Prokka|GAGFMGDE_44); gnlProkkaGAGFMGDE_45 (original name was: gnl|Prokka|GAGFMGDE_45); gnlProkkaGAGFMGDE_46 (original name was: gnl|Prokka|GAGFMGDE_46); gnlProkkaGAGFMGDE_47 (original name was: gnl|Prokka|GAGFMGDE_47); gnlProkkaGAGFMGDE_48 (original name was: gnl|Prokka|GAGFMGDE_48); gnlProkkaGAGFMGDE_49 (original name was: gnl|Prokka|GAGFMGDE_49); gnlProkkaGAGFMGDE_50 (original name was: gnl|Prokka|GAGFMGDE_50); gnlProkkaGAGFMGDE_51 (original name was: gnl|Prokka|GAGFMGDE_51); gnlProkkaGAGFMGDE_52 (original name was: gnl|Prokka|GAGFMGDE_52); gnlProkkaGAGFMGDE_53 (original name was: gnl|Prokka|GAGFMGDE_53); gnlProkkaGAGFMGDE_54 (original name was: gnl|Prokka|GAGFMGDE_54); gnlProkkaGAGFMGDE_55 (original name was: gnl|Prokka|GAGFMGDE_55); gnlProkkaGAGFMGDE_56 (original name was: gnl|Prokka|GAGFMGDE_56); gnlProkkaGAGFMGDE_57 (original name was: gnl|Prokka|GAGFMGDE_57); gnlProkkaGAGFMGDE_58 (original name was: gnl|Prokka|GAGFMGDE_58); gnlProkkaGAGFMGDE_59 (original name was: gnl|Prokka|GAGFMGDE_59); gnlProkkaGAGFMGDE_60 (original name was: gnl|Prokka|GAGFMGDE_60); gnlProkkaGAGFMGDE_61 (original name was: gnl|Prokka|GAGFMGDE_61); gnlProkkaGAGFMGDE_63 (original name was: gnl|Prokka|GAGFMGDE_63); gnlProkkaGAGFMGDE_64 (original name was: gnl|Prokka|GAGFMGDE_64); gnlProkkaGAGFMGDE_65 (original name was: gnl|Prokka|GAGFMGDE_65); gnlProkkaGAGFMGDE_66 (original name was: gnl|Prokka|GAGFMGDE_66); gnlProkkaGAGFMGDE_67 (original name was: gnl|Prokka|GAGFMGDE_67); gnlProkkaGAGFMGDE_68 (original name was: gnl|Prokka|GAGFMGDE_68); gnlProkkaGAGFMGDE_69 (original name was: gnl|Prokka|GAGFMGDE_69); gnlProkkaGAGFMGDE_70 (original name was: gnl|Prokka|GAGFMGDE_70); gnlProkkaGAGFMGDE_71 (original name was: gnl|Prokka|GAGFMGDE_71); gnlProkkaGAGFMGDE_72 (original name was: gnl|Prokka|GAGFMGDE_72); gnlProkkaGAGFMGDE_73 (original name was: gnl|Prokka|GAGFMGDE_73); gnlProkkaGAGFMGDE_74 (original name was: gnl|Prokka|GAGFMGDE_74); gnlProkkaGAGFMGDE_75 (original name was: gnl|Prokka|GAGFMGDE_75); gnlProkkaGAGFMGDE_76 (original name was: gnl|Prokka|GAGFMGDE_76); gnlProkkaGAGFMGDE_77 (original name was: gnl|Prokka|GAGFMGDE_77); gnlProkkaGAGFMGDE_78 (original name was: gnl|Prokka|GAGFMGDE_78); gnlProkkaGAGFMGDE_79 (original name was: gnl|Prokka|GAGFMGDE_79); gnlProkkaGAGFMGDE_80 (original name was: gnl|Prokka|GAGFMGDE_80); gnlProkkaGAGFMGDE_81 (original name was: gnl|Prokka|GAGFMGDE_81); gnlProkkaGAGFMGDE_82 (original name was: gnl|Prokka|GAGFMGDE_82); gnlProkkaGAGFMGDE_83 (original name was: gnl|Prokka|GAGFMGDE_83); gnlProkkaGAGFMGDE_84 (original name was: gnl|Prokka|GAGFMGDE_84); gnlProkkaGAGFMGDE_85 (original name was: gnl|Prokka|GAGFMGDE_85); gnlProkkaGAGFMGDE_86 (original name was: gnl|Prokka|GAGFMGDE_86); gnlProkkaGAGFMGDE_87 (original name was: gnl|Prokka|GAGFMGDE_87); gnlProkkaGAGFMGDE_88 (original name was: gnl|Prokka|GAGFMGDE_88); gnlProkkaGAGFMGDE_89 (original name was: gnl|Prokka|GAGFMGDE_89); gnlProkkaGAGFMGDE_90 (original name was: gnl|Prokka|GAGFMGDE_90); gnlProkkaGAGFMGDE_91 (original name was: gnl|Prokka|GAGFMGDE_91); gnlProkkaGAGFMGDE_92 (original name was: gnl|Prokka|GAGFMGDE_92); gnlProkkaGAGFMGDE_93 (original name was: gnl|Prokka|GAGFMGDE_93); gnlProkkaGAGFMGDE_94 (original name was: gnl|Prokka|GAGFMGDE_94); gnlProkkaGAGFMGDE_95 (original name was: gnl|Prokka|GAGFMGDE_95); gnlProkkaGAGFMGDE_96 (original name was: gnl|Prokka|GAGFMGDE_96); gnlProkkaGAGFMGDE_98 (original name was: gnl|Prokka|GAGFMGDE_98); gnlProkkaGAGFMGDE_99 (original name was: gnl|Prokka|GAGFMGDE_99); gnlProkkaGAGFMGDE_100 (original name was: gnl|Prokka|GAGFMGDE_100); gnlProkkaGAGFMGDE_101 (original name was: gnl|Prokka|GAGFMGDE_101); gnlProkkaGAGFMGDE_102 (original name was: gnl|Prokka|GAGFMGDE_102); gnlProkkaGAGFMGDE_103 (original name was: gnl|Prokka|GAGFMGDE_103); gnlProkkaGAGFMGDE_104 (original name was: gnl|Prokka|GAGFMGDE_104); gnlProkkaGAGFMGDE_105 (original name was: gnl|Prokka|GAGFMGDE_105); gnlProkkaGAGFMGDE_106 (original name was: gnl|Prokka|GAGFMGDE_106); gnlProkkaGAGFMGDE_107 (original name was: gnl|Prokka|GAGFMGDE_107); gnlProkkaGAGFMGDE_108 (original name was: gnl|Prokka|GAGFMGDE_108); gnlProkkaGAGFMGDE_110 (original name was: gnl|Prokka|GAGFMGDE_110); gnlProkkaGAGFMGDE_111 (original name was: gnl|Prokka|GAGFMGDE_111); gnlProkkaGAGFMGDE_112 (original name was: gnl|Prokka|GAGFMGDE_112); gnlProkkaGAGFMGDE_113 (original name was: gnl|Prokka|GAGFMGDE_113); gnlProkkaGAGFMGDE_114 (original name was: gnl|Prokka|GAGFMGDE_114); gnlProkkaGAGFMGDE_115 (original name was: gnl|Prokka|GAGFMGDE_115); gnlProkkaGAGFMGDE_116 (original name was: gnl|Prokka|GAGFMGDE_116); gnlProkkaGAGFMGDE_117 (original name was: gnl|Prokka|GAGFMGDE_117); gnlProkkaGAGFMGDE_118 (original name was: gnl|Prokka|GAGFMGDE_118); gnlProkkaGAGFMGDE_119 (original name was: gnl|Prokka|GAGFMGDE_119); gnlProkkaGAGFMGDE_120 (original name was: gnl|Prokka|GAGFMGDE_120); gnlProkkaGAGFMGDE_121 (original name was: gnl|Prokka|GAGFMGDE_121); gnlProkkaGAGFMGDE_122 (original name was: gnl|Prokka|GAGFMGDE_122); gnlProkkaGAGFMGDE_123 (original name was: gnl|Prokka|GAGFMGDE_123); gnlProkkaGAGFMGDE_124 (original name was: gnl|Prokka|GAGFMGDE_124); gnlProkkaGAGFMGDE_125 (original name was: gnl|Prokka|GAGFMGDE_125); gnlProkkaGAGFMGDE_126 (original name was: gnl|Prokka|GAGFMGDE_126); gnlProkkaGAGFMGDE_127 (original name was: gnl|Prokka|GAGFMGDE_127); gnlProkkaGAGFMGDE_128 (original name was: gnl|Prokka|GAGFMGDE_128); gnlProkkaGAGFMGDE_129 (original name was: gnl|Prokka|GAGFMGDE_129); gnlProkkaGAGFMGDE_130 (original name was: gnl|Prokka|GAGFMGDE_130); gnlProkkaGAGFMGDE_131 (original name was: gnl|Prokka|GAGFMGDE_131); gnlProkkaGAGFMGDE_132 (original name was: gnl|Prokka|GAGFMGDE_132); gnlProkkaGAGFMGDE_133 (original name was: gnl|Prokka|GAGFMGDE_133); gnlProkkaGAGFMGDE_134 (original name was: gnl|Prokka|GAGFMGDE_134); gnlProkkaGAGFMGDE_135 (original name was: gnl|Prokka|GAGFMGDE_135); gnlProkkaGAGFMGDE_136 (original name was: gnl|Prokka|GAGFMGDE_136); gnlProkkaGAGFMGDE_137 (original name was: gnl|Prokka|GAGFMGDE_137); gnlProkkaGAGFMGDE_138 (original name was: gnl|Prokka|GAGFMGDE_138); gnlProkkaGAGFMGDE_139 (original name was: gnl|Prokka|GAGFMGDE_139); gnlProkkaGAGFMGDE_140 (original name was: gnl|Prokka|GAGFMGDE_140); gnlProkkaGAGFMGDE_141 (original name was: gnl|Prokka|GAGFMGDE_141); gnlProkkaGAGFMGDE_142 (original name was: gnl|Prokka|GAGFMGDE_142); gnlProkkaGAGFMGDE_143 (original name was: gnl|Prokka|GAGFMGDE_143); gnlProkkaGAGFMGDE_144 (original name was: gnl|Prokka|GAGFMGDE_144); gnlProkkaGAGFMGDE_145 (original name was: gnl|Prokka|GAGFMGDE_145); gnlProkkaGAGFMGDE_146 (original name was: gnl|Prokka|GAGFMGDE_146); gnlProkkaGAGFMGDE_147 (original name was: gnl|Prokka|GAGFMGDE_147); gnlProkkaGAGFMGDE_148 (original name was: gnl|Prokka|GAGFMGDE_148); gnlProkkaGAGFMGDE_149 (original name was: gnl|Prokka|GAGFMGDE_149); gnlProkkaGAGFMGDE_150 (original name was: gnl|Prokka|GAGFMGDE_150); gnlProkkaGAGFMGDE_151 (original name was: gnl|Prokka|GAGFMGDE_151); gnlProkkaGAGFMGDE_152 (original name was: gnl|Prokka|GAGFMGDE_152); gnlProkkaGAGFMGDE_153 (original name was: gnl|Prokka|GAGFMGDE_153); gnlProkkaGAGFMGDE_154 (original name was: gnl|Prokka|GAGFMGDE_154); gnlProkkaGAGFMGDE_155 (original name was: gnl|Prokka|GAGFMGDE_155); gnlProkkaGAGFMGDE_156 (original name was: gnl|Prokka|GAGFMGDE_156); gnlProkkaGAGFMGDE_157 (original name was: gnl|Prokka|GAGFMGDE_157); gnlProkkaGAGFMGDE_158 (original name was: gnl|Prokka|GAGFMGDE_158); gnlProkkaGAGFMGDE_159 (original name was: gnl|Prokka|GAGFMGDE_159); gnlProkkaGAGFMGDE_161 (original name was: gnl|Prokka|GAGFMGDE_161); gnlProkkaGAGFMGDE_162 (original name was: gnl|Prokka|GAGFMGDE_162); gnlProkkaGAGFMGDE_163 (original name was: gnl|Prokka|GAGFMGDE_163); gnlProkkaGAGFMGDE_164 (original name was: gnl|Prokka|GAGFMGDE_164); gnlProkkaGAGFMGDE_165 (original name was: gnl|Prokka|GAGFMGDE_165); gnlProkkaGAGFMGDE_166 (original name was: gnl|Prokka|GAGFMGDE_166); gnlProkkaGAGFMGDE_167 (original name was: gnl|Prokka|GAGFMGDE_167); gnlProkkaGAGFMGDE_168 (original name was: gnl|Prokka|GAGFMGDE_168); gnlProkkaGAGFMGDE_169 (original name was: gnl|Prokka|GAGFMGDE_169); gnlProkkaGAGFMGDE_170 (original name was: gnl|Prokka|GAGFMGDE_170); gnlProkkaGAGFMGDE_171 (original name was: gnl|Prokka|GAGFMGDE_171); gnlProkkaGAGFMGDE_172 (original name was: gnl|Prokka|GAGFMGDE_172); gnlProkkaGAGFMGDE_173 (original name was: gnl|Prokka|GAGFMGDE_173); gnlProkkaGAGFMGDE_174 (original name was: gnl|Prokka|GAGFMGDE_174); gnlProkkaGAGFMGDE_175 (original name was: gnl|Prokka|GAGFMGDE_175); gnlProkkaGAGFMGDE_176 (original name was: gnl|Prokka|GAGFMGDE_176); gnlProkkaGAGFMGDE_177 (original name was: gnl|Prokka|GAGFMGDE_177); gnlProkkaGAGFMGDE_178 (original name was: gnl|Prokka|GAGFMGDE_178); gnlProkkaGAGFMGDE_179 (original name was: gnl|Prokka|GAGFMGDE_179); gnlProkkaGAGFMGDE_180 (original name was: gnl|Prokka|GAGFMGDE_180); gnlProkkaGAGFMGDE_181 (original name was: gnl|Prokka|GAGFMGDE_181); gnlProkkaGAGFMGDE_182 (original name was: gnl|Prokka|GAGFMGDE_182); gnlProkkaGAGFMGDE_183 (original name was: gnl|Prokka|GAGFMGDE_183); gnlProkkaGAGFMGDE_184 (original name was: gnl|Prokka|GAGFMGDE_184); gnlProkkaGAGFMGDE_185 (original name was: gnl|Prokka|GAGFMGDE_185); gnlProkkaGAGFMGDE_186 (original name was: gnl|Prokka|GAGFMGDE_186); gnlProkkaGAGFMGDE_187 (original name was: gnl|Prokka|GAGFMGDE_187); gnlProkkaGAGFMGDE_188 (original name was: gnl|Prokka|GAGFMGDE_188); gnlProkkaGAGFMGDE_189 (original name was: gnl|Prokka|GAGFMGDE_189); gnlProkkaGAGFMGDE_190 (original name was: gnl|Prokka|GAGFMGDE_190); gnlProkkaGAGFMGDE_191 (original name was: gnl|Prokka|GAGFMGDE_191); gnlProkkaGAGFMGDE_192 (original name was: gnl|Prokka|GAGFMGDE_192); gnlProkkaGAGFMGDE_193 (original name was: gnl|Prokka|GAGFMGDE_193); gnlProkkaGAGFMGDE_194 (original name was: gnl|Prokka|GAGFMGDE_194); gnlProkkaGAGFMGDE_195 (original name was: gnl|Prokka|GAGFMGDE_195)

Compact view

gnlProkkaGAGFMGDE_62 - Region 1 - lanthipeptide-class-ii

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Location: 1 - 4,385 nt. (total: 4,385 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg62_2

ctg62_1

Leader:

MEKELDEIEIIDTESIEEKLSFIVYG

Core:

TIVCC

Core with dehydrations:

DhbIVCysCys

ctg62_5

Leader:

MRFAKLKLRTLYQVEFANSKKYKFQEEMNMVGT

Core:

MSEKKFICLWIYNGK

Core with dehydrations:

MDhaEKKFICysLWIYNGK

antiSMASH-DB 4.0 matches for ctg62_5

100.0% NZ_JADPGO010000016.1and 1 other:

NZ_JAQDGJ010000020.1 Lanthipeptides: allorf_03808_03954_lanthipeptide

Lanthipeptides: allorf_03938_04084_lanthipeptide

MSEKKFICLWIYNGK

7.5% NZ_CP093302.1: Lanthipeptides: allorf_0563784_0563987_lanthipeptide

ICLWIY

ICLW++

ICLWVF

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg62_1 - Class II: Cleavage pHMM score: -5.90; RODEO score: 0; Monoisotopic mass: 519.2 Da; Molecular weight: 519.7 Da; Number of bridges: 1
ctg62_5 - Class II: Cleavage pHMM score: -3.70; RODEO score: 0; Monoisotopic mass: 1840.9 Da; Molecular weight: 1842.2 Da; Number of bridges: 1

gnlProkkaGAGFMGDE_97 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 15,841 nt. (total: 15,841 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGAGFMGDE_109 - Region 1 - ranthipeptide

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Location: 1 - 13,781 nt. (total: 13,781 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

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core biosynthetic genes

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transport-related genes

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resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGAGFMGDE_160 - Region 1 - NRPS

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Location: 20,501 - 56,592 nt. (total: 36,092 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

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Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 20500 - 56592:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg160_45

AMP-binding (20..419): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLTDGGISK
Nearest Stachelhaus code(s):: Leu or Trp DVLTDGGISK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

AMP-binding (1033..1421): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAMFSGAIFK
Nearest Stachelhaus code(s):: Leu or Trp DAMFSGAIFK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

AMP-binding (2027..2418): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAITTGGVSK
Nearest Stachelhaus code(s):: Leu or Trp DAITTGGVSK (100% 8Å match)
Stachelhaus code match:: 100% (strong)