## Thu Jun 27 16:34:34 2024 ## emapper-2.1.12 ## /d223NFS/m128030022/anaconda3/envs/eggnog/bin/emapper.py -i /d223NFS/m128030014/NGP/gene_list/prokka_results/GCA_008674055.1/GCA_008674055.1.faa --temp_dir /d223NFS/m128030022/NGPs/NGPs_new/databases/NGPs_DB/NGPs_db/GCA_008674055.1/2.eggNOGmapper --output_dir /d223NFS/m128030022/NGPs/NGPs_new/databases/NGPs_DB/NGPs_db/GCA_008674055.1/2.eggNOGmapper --output eggNOG_out --override --cpu 20 -m diamond --sensmode fast ## #query seed_ortholog evalue score eggNOG_OGs max_annot_lvl COG_category Description Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction PFAMs HNDODLHM_00001 428125.CLOLEP_01236 2.65e-59 187.0 COG0756@1|root,COG0756@2|Bacteria,1V6HX@1239|Firmicutes,24K3X@186801|Clostridia,3WK0P@541000|Ruminococcaceae 186801|Clostridia F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA dut - 3.6.1.23 ko:K01520 ko00240,ko00983,ko01100,map00240,map00983,map01100 M00053 R02100,R11896 RC00002 ko00000,ko00001,ko00002,ko01000,ko03400 - - - dUTPase HNDODLHM_00002 428125.CLOLEP_01234 1.77e-184 519.0 COG1077@1|root,COG1077@2|Bacteria,1TP51@1239|Firmicutes,247RG@186801|Clostridia,3WGF8@541000|Ruminococcaceae 186801|Clostridia D Cell shape determining protein, MreB Mrl family - - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl HNDODLHM_00003 1120746.CCNL01000007_gene404 1.01e-54 184.0 COG1792@1|root,COG1792@2|Bacteria,2NPNX@2323|unclassified Bacteria 2|Bacteria M Cell shape-determining protein MreC mreC GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007163,GO:0008150,GO:0008360,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0030428,GO:0031224,GO:0031226,GO:0042546,GO:0043621,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071554,GO:0071840,GO:0071944,GO:0071963 - ko:K03570 - - - - ko00000,ko03036 9.B.157.1 - - MreC HNDODLHM_00005 1105031.HMPREF1141_1472 5.41e-173 518.0 COG0768@1|root,COG0768@2|Bacteria,1TQHY@1239|Firmicutes,2480Z@186801|Clostridia,36DW0@31979|Clostridiaceae 186801|Clostridia M Penicillin-binding Protein mrdA - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase HNDODLHM_00006 698961.CGSMWGv6119V5_01713 2.64e-42 140.0 COG3041@1|root,COG3041@2|Bacteria,2GT66@201174|Actinobacteria,4D1DI@85004|Bifidobacteriales 201174|Actinobacteria S ParE toxin of type II toxin-antitoxin system, parDE - - - ko:K19157 - - - - ko00000,ko01000,ko02048 - - - YafQ_toxin HNDODLHM_00007 1120933.ATUY01000002_gene158 9.45e-46 170.0 COG3023@1|root,COG3757@1|root,COG3023@2|Bacteria,COG3757@2|Bacteria 2|Bacteria M lysozyme activity - - - ko:K07273 - - - - ko00000 - - - Amidase_2,CW_7,Glucosaminidase,Glyco_hydro_25,LysM HNDODLHM_00009 642492.Clole_0532 1.18e-28 120.0 COG2508@1|root,COG2508@2|Bacteria,1TTA0@1239|Firmicutes,248HN@186801|Clostridia 186801|Clostridia QT Psort location Cytoplasmic, score - - - - - - - - - - - - HTH_30,PucR HNDODLHM_00011 469596.HMPREF9488_03505 1.41e-90 272.0 COG0745@1|root,COG0745@2|Bacteria,1TT73@1239|Firmicutes,3VR04@526524|Erysipelotrichia 526524|Erysipelotrichia K Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_00012 658086.HMPREF0994_00353 1.44e-81 267.0 COG0642@1|root,COG2205@2|Bacteria,1TRD2@1239|Firmicutes,247M3@186801|Clostridia,27IJ0@186928|unclassified Lachnospiraceae 186801|Clostridia T HAMP domain - - - - - - - - - - - - HAMP,HATPase_c,HisKA HNDODLHM_00014 1235835.C814_01868 1.04e-83 264.0 COG2348@1|root,COG2348@2|Bacteria,1TRZU@1239|Firmicutes,24AU8@186801|Clostridia,3WI7M@541000|Ruminococcaceae 186801|Clostridia V Methicillin resistance femX - 2.3.2.10,2.3.2.16 ko:K05363,ko:K11693 ko00550,ko01100,map00550,map01100 - R08776,R08779 RC00055,RC00096 ko00000,ko00001,ko01000,ko01011 - - - FemAB HNDODLHM_00015 97138.C820_02726 3.97e-58 194.0 COG0613@1|root,COG0613@2|Bacteria,1TPI5@1239|Firmicutes,248H2@186801|Clostridia,36DX7@31979|Clostridiaceae 186801|Clostridia S PHP domain trpH - 3.1.3.97 ko:K07053 - - R00188,R11188 RC00078 ko00000,ko01000 - - - PHP HNDODLHM_00016 428125.CLOLEP_03693 6.24e-134 387.0 COG0157@1|root,COG0157@2|Bacteria,1TPQC@1239|Firmicutes,248P2@186801|Clostridia,3WGJ1@541000|Ruminococcaceae 186801|Clostridia H Belongs to the NadC ModD family nadC - 2.4.2.19 ko:K00767 ko00760,ko01100,map00760,map01100 M00115 R03348 RC02877 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS12010 QRPTase_C,QRPTase_N HNDODLHM_00017 428125.CLOLEP_03694 1.55e-210 598.0 COG0029@1|root,COG0029@2|Bacteria,1UHSP@1239|Firmicutes,25E6F@186801|Clostridia,3WGEV@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the oxidation of L-aspartate to iminoaspartate nadB - 1.4.3.16 ko:K00278 ko00250,ko00760,ko01100,map00250,map00760,map01100 M00115 R00357,R00481 RC00006,RC02566 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C HNDODLHM_00018 865861.AZSU01000010_gene729 6.43e-57 188.0 COG1211@1|root,COG1211@2|Bacteria,1V3M7@1239|Firmicutes,248E6@186801|Clostridia,36EIP@31979|Clostridiaceae 186801|Clostridia I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) ispD - 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS20335 IspD HNDODLHM_00019 1410617.JHXH01000007_gene1520 3.69e-74 226.0 COG0245@1|root,COG0245@2|Bacteria,1V3P0@1239|Firmicutes,24HCM@186801|Clostridia,3WITA@541000|Ruminococcaceae 186801|Clostridia H Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) ispF - 2.7.7.60,4.6.1.12 ko:K01770,ko:K12506 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633,R05637 RC00002,RC01440 ko00000,ko00001,ko00002,ko01000 - - - IspD,YgbB HNDODLHM_00020 428125.CLOLEP_00565 4.39e-149 433.0 COG1686@1|root,COG1686@2|Bacteria,1TQN0@1239|Firmicutes,249B3@186801|Clostridia,3WHE1@541000|Ruminococcaceae 186801|Clostridia M Belongs to the peptidase S11 family dacF - 3.4.16.4 ko:K07258 ko00550,ko01100,map00550,map01100 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - PBP5_C,Peptidase_S11 HNDODLHM_00021 428125.CLOLEP_00566 1.35e-255 708.0 COG0166@1|root,COG0166@2|Bacteria,1TP29@1239|Firmicutes,2487A@186801|Clostridia,3WHJX@541000|Ruminococcaceae 186801|Clostridia G Belongs to the GPI family pgi - 5.3.1.9 ko:K01810 ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200 M00001,M00004,M00114 R02739,R02740,R03321 RC00376,RC00563 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGI HNDODLHM_00022 428125.CLOLEP_00567 8.04e-54 172.0 COG0593@1|root,COG0593@2|Bacteria,1VAFE@1239|Firmicutes,25E3U@186801|Clostridia,3WSQ8@541000|Ruminococcaceae 186801|Clostridia L Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00024 537013.CLOSTMETH_01432 4.15e-72 224.0 COG1102@1|root,COG1102@2|Bacteria,1TRCW@1239|Firmicutes,249Z9@186801|Clostridia,3WI5H@541000|Ruminococcaceae 186801|Clostridia F Cytidylate kinase-like family - - 2.7.4.25 ko:K00945 ko00240,ko01100,map00240,map01100 M00052 R00158,R00512,R01665 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Cytidylate_kin2 HNDODLHM_00025 411473.RUMCAL_00081 1.98e-146 422.0 COG0463@1|root,COG0463@2|Bacteria,1TPR3@1239|Firmicutes,248Q5@186801|Clostridia,3WHGJ@541000|Ruminococcaceae 186801|Clostridia M PFAM Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 HNDODLHM_00026 500632.CLONEX_00165 2.26e-101 328.0 COG3274@1|root,COG3274@2|Bacteria,1UYCP@1239|Firmicutes,24FH8@186801|Clostridia 186801|Clostridia S Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 HNDODLHM_00027 428125.CLOLEP_00237 3.28e-250 705.0 COG1109@1|root,COG1109@2|Bacteria,1TP2N@1239|Firmicutes,2481Y@186801|Clostridia,3WGEY@541000|Ruminococcaceae 186801|Clostridia G Phosphoglucomutase phosphomannomutase, alpha beta alpha domain pgcA - 5.4.2.2,5.4.2.8 ko:K01835,ko:K01840 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114,M00549 R00959,R01057,R01818,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV HNDODLHM_00028 556261.HMPREF0240_03867 3.58e-38 129.0 COG2161@1|root,COG2161@2|Bacteria,1V336@1239|Firmicutes,24NWF@186801|Clostridia,36N2H@31979|Clostridiaceae 186801|Clostridia D Antitoxin Phd_YefM, type II toxin-antitoxin system - - - - - - - - - - - - PhdYeFM_antitox HNDODLHM_00030 1507.HMPREF0262_00053 2.23e-22 91.3 2CDK1@1|root,32G0D@2|Bacteria,1V6YH@1239|Firmicutes,24K20@186801|Clostridia,36T6Q@31979|Clostridiaceae 186801|Clostridia - - - - - - - - - - - - - - MobC,RHH_1 HNDODLHM_00031 469596.HMPREF9488_02225 5.73e-147 434.0 COG3843@1|root,COG3843@2|Bacteria,1TPRX@1239|Firmicutes,3VSZ6@526524|Erysipelotrichia 526524|Erysipelotrichia U Relaxase/Mobilisation nuclease domain - - - - - - - - - - - - Relaxase HNDODLHM_00032 469596.HMPREF9488_02226 5.03e-74 234.0 295P2@1|root,2ZT0F@2|Bacteria,1TT96@1239|Firmicutes,3VR6M@526524|Erysipelotrichia 526524|Erysipelotrichia S Protein of unknown function (DUF3801) - - - - - - - - - - - - DUF3801 HNDODLHM_00033 1408437.JNJN01000042_gene794 8.83e-37 139.0 COG4227@1|root,COG4227@2|Bacteria,1V3C4@1239|Firmicutes,24FSM@186801|Clostridia,25X6C@186806|Eubacteriaceae 186801|Clostridia L Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00035 999413.HMPREF1094_00585 6.65e-312 864.0 COG3505@1|root,COG3505@2|Bacteria,1TPCF@1239|Firmicutes,3VP0A@526524|Erysipelotrichia 526524|Erysipelotrichia U Psort location Cytoplasmic, score - - - - - - - - - - - - T4SS-DNA_transf,TraG-D_C HNDODLHM_00036 411468.CLOSCI_02574 6.46e-42 140.0 2DMPF@1|root,32SVU@2|Bacteria,1VA0M@1239|Firmicutes,24JF3@186801|Clostridia,2234H@1506553|Lachnoclostridium 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_00039 1410670.JHXF01000001_gene2482 1.41e-47 155.0 2ANER@1|root,315MJ@2|Bacteria,1V6SU@1239|Firmicutes,24JBZ@186801|Clostridia,3WK2T@541000|Ruminococcaceae 186801|Clostridia S Stage V sporulation protein AE spoVAE - - ko:K06407 - - - - ko00000 - - - SpoVAC_SpoVAEB HNDODLHM_00040 428125.CLOLEP_02434 2.88e-128 377.0 COG1131@1|root,COG1131@2|Bacteria,1TQUS@1239|Firmicutes,25AZ1@186801|Clostridia,3WH5S@541000|Ruminococcaceae 186801|Clostridia V ABC-type multidrug transport system ATPase component - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00041 877411.JMMA01000002_gene271 1.19e-57 189.0 COG1277@1|root,COG1277@2|Bacteria,1V8QD@1239|Firmicutes,25DA1@186801|Clostridia,3WSGA@541000|Ruminococcaceae 186801|Clostridia S ABC-2 family transporter protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,ABC2_membrane_3 HNDODLHM_00042 428125.CLOLEP_02436 3.43e-94 303.0 COG3225@1|root,COG3225@2|Bacteria,1V597@1239|Firmicutes,25DA0@186801|Clostridia,3WSG9@541000|Ruminococcaceae 186801|Clostridia N ABC-type uncharacterized transport system - - - - - - - - - - - - ABC_transp_aux HNDODLHM_00044 180332.JTGN01000023_gene1600 1.79e-50 172.0 COG3279@1|root,COG3279@2|Bacteria,1UYV2@1239|Firmicutes,24F5U@186801|Clostridia 186801|Clostridia KT Psort location Cytoplasmic, score - - - - - - - - - - - - LytTR,Response_reg HNDODLHM_00045 411469.EUBHAL_03061 2.08e-116 338.0 COG0035@1|root,COG0035@2|Bacteria,1TPMT@1239|Firmicutes,248FV@186801|Clostridia,25V9I@186806|Eubacteriaceae 186801|Clostridia F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate upp - 2.4.2.9 ko:K00761 ko00240,ko01100,map00240,map01100 - R00966 RC00063 ko00000,ko00001,ko01000 - - - UPRTase HNDODLHM_00046 411463.EUBVEN_01765 2.09e-176 510.0 COG2233@1|root,COG2233@2|Bacteria,1TQKX@1239|Firmicutes,2485Z@186801|Clostridia,25VSJ@186806|Eubacteriaceae 186801|Clostridia F Psort location CytoplasmicMembrane, score 10.00 uraA - - ko:K02824 - - - - ko00000,ko02000 2.A.40.1.1,2.A.40.1.2 - - Xan_ur_permease HNDODLHM_00047 428125.CLOLEP_00230 1.03e-248 701.0 COG0028@1|root,COG0028@2|Bacteria,1TQE8@1239|Firmicutes,2480U@186801|Clostridia,3WHFZ@541000|Ruminococcaceae 186801|Clostridia H acetolactate synthase large subunit ilvB - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N HNDODLHM_00048 1280664.AUIX01000016_gene1825 3.64e-50 171.0 COG0775@1|root,COG0775@2|Bacteria,1U7WK@1239|Firmicutes,247U5@186801|Clostridia,4BXB2@830|Butyrivibrio 186801|Clostridia F Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively mtnN - 3.2.2.9 ko:K01243 ko00270,ko01100,ko01230,map00270,map01100,map01230 M00034,M00609 R00194,R01401 RC00063,RC00318 ko00000,ko00001,ko00002,ko01000 - - - PNP_UDP_1 HNDODLHM_00049 428125.CLOLEP_00114 5.01e-71 224.0 COG1385@1|root,COG1385@2|Bacteria,1V1CT@1239|Firmicutes,249VK@186801|Clostridia,3WIFN@541000|Ruminococcaceae 186801|Clostridia J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit rsmE - 2.1.1.193 ko:K09761 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_RNA HNDODLHM_00050 428125.CLOLEP_00112 1.34e-44 159.0 COG1058@1|root,COG1546@1|root,COG1058@2|Bacteria,COG1546@2|Bacteria,1TQ1N@1239|Firmicutes,249WC@186801|Clostridia,3WGRD@541000|Ruminococcaceae 186801|Clostridia S Belongs to the CinA family cinA - 3.5.1.42 ko:K03742,ko:K03743 ko00760,map00760 - R02322 RC00100 ko00000,ko00001,ko01000 - - - CinA,MoCF_biosynth HNDODLHM_00051 428125.CLOLEP_00110 8.22e-232 652.0 COG1640@1|root,COG1640@2|Bacteria,1W5VQ@1239|Firmicutes,25E46@186801|Clostridia,3WGN6@541000|Ruminococcaceae 186801|Clostridia G Psort location Cytoplasmic, score malQ - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 - Glyco_hydro_77 HNDODLHM_00052 1499683.CCFF01000016_gene781 0.0 933.0 COG0058@1|root,COG0058@2|Bacteria,1TQAJ@1239|Firmicutes,248E1@186801|Clostridia,36E5W@31979|Clostridiaceae 186801|Clostridia G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties glgP - 2.4.1.1 ko:K00688 ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931 - R02111 - ko00000,ko00001,ko01000 - GT35 - Phosphorylase HNDODLHM_00053 1105031.HMPREF1141_3175 2.94e-94 276.0 COG0066@1|root,COG0066@2|Bacteria,1V1I6@1239|Firmicutes,24FUI@186801|Clostridia,36I0J@31979|Clostridiaceae 186801|Clostridia E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuD - 4.2.1.33,4.2.1.35,4.2.1.85 ko:K01704,ko:K20453 ko00290,ko00660,ko00760,ko01100,ko01110,ko01120,ko01210,ko01230,map00290,map00660,map00760,map01100,map01110,map01120,map01210,map01230 M00432,M00535 R03069,R03896,R03898,R03968,R04001,R10170 RC00843,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase_C HNDODLHM_00054 428125.CLOLEP_00224 4.93e-252 697.0 COG0065@1|root,COG0065@2|Bacteria,1TPE5@1239|Firmicutes,2484F@186801|Clostridia,3WG9G@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuC - 4.2.1.33,4.2.1.35,4.2.1.85 ko:K01703,ko:K20452 ko00290,ko00660,ko00760,ko00966,ko01100,ko01110,ko01120,ko01210,ko01230,map00290,map00660,map00760,map00966,map01100,map01110,map01120,map01210,map01230 M00432,M00535 R03069,R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00843,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS04465 Aconitase HNDODLHM_00055 572479.Hprae_0837 2.06e-32 124.0 COG0664@1|root,COG0664@2|Bacteria,1TVBM@1239|Firmicutes,25CKA@186801|Clostridia,3WB16@53433|Halanaerobiales 186801|Clostridia K PFAM Bacterial regulatory proteins, crp family - - - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - HTH_Crp_2,cNMP_binding HNDODLHM_00056 877415.JNJQ01000067_gene1796 4.95e-20 99.0 COG5492@1|root,COG5492@2|Bacteria,1TS8J@1239|Firmicutes,3VRCS@526524|Erysipelotrichia 526524|Erysipelotrichia N Leucine rich repeats (6 copies) - - - - - - - - - - - - Big_2,FIVAR,LRR_5,SdrD_B HNDODLHM_00057 797515.HMPREF9103_02198 1.14e-60 201.0 COG0657@1|root,COG0657@2|Bacteria,1V2AW@1239|Firmicutes,4HU2V@91061|Bacilli,3F3N7@33958|Lactobacillaceae 91061|Bacilli I Carboxylesterase family - - - - - - - - - - - - Abhydrolase_3 HNDODLHM_00058 1410658.JHWI01000013_gene803 5.06e-19 91.7 COG2207@1|root,COG2207@2|Bacteria,1V27P@1239|Firmicutes,3VUDX@526524|Erysipelotrichia 526524|Erysipelotrichia K COG COG2207 AraC-type DNA-binding domain-containing proteins - - - - - - - - - - - - AraC_binding,HTH_18 HNDODLHM_00059 1449050.JNLE01000005_gene4232 3.54e-37 139.0 COG2207@1|root,COG2207@2|Bacteria,1UZ0Q@1239|Firmicutes,24YIV@186801|Clostridia,36IZ2@31979|Clostridiaceae 186801|Clostridia K AraC-like ligand binding domain - - - - - - - - - - - - AraC_binding,HTH_18 HNDODLHM_00060 1131462.DCF50_p2453 2.73e-125 365.0 COG3645@1|root,COG3645@2|Bacteria,1UBCR@1239|Firmicutes,24DJ3@186801|Clostridia,264PS@186807|Peptococcaceae 186801|Clostridia S Psort location Cytoplasmic, score dinD - - ko:K14623 - - - - ko00000,ko03400 - - - Bro-N HNDODLHM_00061 428125.CLOLEP_01160 7.03e-73 239.0 COG3583@1|root,COG3584@1|root,COG3583@2|Bacteria,COG3584@2|Bacteria,1TTIK@1239|Firmicutes,24997@186801|Clostridia,3WJ9D@541000|Ruminococcaceae 186801|Clostridia S G5 domain yabE - - - - - - - - - - - 3D,DUF348,G5 HNDODLHM_00064 1499683.CCFF01000016_gene785 3.55e-74 245.0 COG2182@1|root,COG2182@2|Bacteria,1VRPK@1239|Firmicutes,24Y63@186801|Clostridia,36W96@31979|Clostridiaceae 186801|Clostridia G Bacterial extracellular solute-binding protein - - - ko:K15770 ko02010,map02010 M00491 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.16,3.A.1.1.2 - - SBP_bac_8 HNDODLHM_00065 1499683.CCFF01000016_gene784 9.07e-173 502.0 COG1175@1|root,COG1175@2|Bacteria,1TR2A@1239|Firmicutes,247MA@186801|Clostridia,36E1M@31979|Clostridiaceae 186801|Clostridia G Binding-protein-dependent transport system inner membrane component - - - ko:K15771 ko02010,map02010 M00491 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.16,3.A.1.1.2 - - BPD_transp_1 HNDODLHM_00066 699246.HMPREF0868_0183 2.81e-119 350.0 COG3833@1|root,COG3833@2|Bacteria,1TRB7@1239|Firmicutes,248A7@186801|Clostridia 186801|Clostridia P PFAM binding-protein-dependent transport systems inner membrane component - - - ko:K15772 ko02010,map02010 M00491 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.16,3.A.1.1.2 - - BPD_transp_1 HNDODLHM_00067 642492.Clole_2971 2.79e-122 376.0 COG0366@1|root,COG0366@2|Bacteria,1TSEA@1239|Firmicutes,248HJ@186801|Clostridia 186801|Clostridia G Alpha amylase catalytic - - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,DUF3459 HNDODLHM_00068 428125.CLOLEP_03944 5.61e-87 256.0 COG0048@1|root,COG0048@2|Bacteria,1V1FJ@1239|Firmicutes,24FQT@186801|Clostridia,3WIHG@541000|Ruminococcaceae 186801|Clostridia J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit rpsL - - ko:K02950 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosom_S12_S23 HNDODLHM_00069 1105031.HMPREF1141_0841 6.57e-96 280.0 COG0049@1|root,COG0049@2|Bacteria,1V1GG@1239|Firmicutes,24FQN@186801|Clostridia,36DC5@31979|Clostridiaceae 186801|Clostridia J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA rpsG - - ko:K02992 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S7 HNDODLHM_00070 428125.CLOLEP_03946 0.0 1148.0 COG0480@1|root,COG0480@2|Bacteria,1TPF9@1239|Firmicutes,247VN@186801|Clostridia,3WGEG@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome fusA - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 HNDODLHM_00071 1120746.CCNL01000011_gene1565 2.07e-264 727.0 COG0050@1|root,COG0050@2|Bacteria,2NNQV@2323|unclassified Bacteria 2|Bacteria J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis tuf - - ko:K02358 - - - - ko00000,ko03012,ko03029,ko04147 - - - GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 HNDODLHM_00072 665956.HMPREF1032_01809 1.71e-201 572.0 COG1653@1|root,COG1653@2|Bacteria,1TQHT@1239|Firmicutes,249J6@186801|Clostridia,3WICE@541000|Ruminococcaceae 186801|Clostridia G Bacterial extracellular solute-binding protein amyE - - ko:K10117 ko02010,map02010 M00196 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.28 - - SBP_bac_8,TAT_signal HNDODLHM_00073 1519439.JPJG01000014_gene107 1.25e-126 370.0 COG1175@1|root,COG1175@2|Bacteria,1TP1Q@1239|Firmicutes,24ADV@186801|Clostridia,2N8XU@216572|Oscillospiraceae 186801|Clostridia G Binding-protein-dependent transport system inner membrane component - - - ko:K10118 ko02010,map02010 M00196 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.28 - - BPD_transp_1 HNDODLHM_00074 411463.EUBVEN_02432 3.11e-120 353.0 COG0395@1|root,COG0395@2|Bacteria,1TR45@1239|Firmicutes,24A48@186801|Clostridia,25UYF@186806|Eubacteriaceae 186801|Clostridia P sugar transport system permease - - - ko:K10119 ko02010,map02010 M00196 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.28 - - BPD_transp_1 HNDODLHM_00075 428125.CLOLEP_02998 0.0 957.0 COG0542@1|root,COG0542@2|Bacteria,1TPMU@1239|Firmicutes,2486F@186801|Clostridia,3WGI2@541000|Ruminococcaceae 186801|Clostridia O ATPase family associated with various cellular activities (AAA) - - - ko:K03697 - - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small HNDODLHM_00076 1105031.HMPREF1141_3516 2.04e-41 146.0 COG0558@1|root,COG0558@2|Bacteria,1V4YR@1239|Firmicutes,24FWZ@186801|Clostridia,36VDN@31979|Clostridiaceae 186801|Clostridia I Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - 2.7.8.41 ko:K08744 ko00564,ko01100,map00564,map01100 - R02030 RC00002,RC00017 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf HNDODLHM_00079 428125.CLOLEP_02995 2.71e-125 363.0 COG0101@1|root,COG0101@2|Bacteria,1TQUY@1239|Firmicutes,248W2@186801|Clostridia,3WIKF@541000|Ruminococcaceae 186801|Clostridia J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs truA - 5.4.99.12 ko:K06173 - - - - ko00000,ko01000,ko03016 - - - PseudoU_synth_1 HNDODLHM_00080 428125.CLOLEP_02994 3.18e-101 302.0 COG0619@1|root,COG0619@2|Bacteria,1TQ0E@1239|Firmicutes,248AB@186801|Clostridia,3WGYM@541000|Ruminococcaceae 186801|Clostridia P Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates ecfT - - ko:K16785 ko02010,map02010 M00582 - - ko00000,ko00001,ko00002,ko02000 3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35 - - CbiQ HNDODLHM_00081 428125.CLOLEP_02993 1.89e-135 391.0 COG1122@1|root,COG1122@2|Bacteria,1TPH8@1239|Firmicutes,248A2@186801|Clostridia,3WG8V@541000|Ruminococcaceae 186801|Clostridia P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates cbiO - - ko:K16787 ko02010,map02010 M00582 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35 - - ABC_tran HNDODLHM_00082 428125.CLOLEP_02992 1.33e-139 401.0 COG1122@1|root,COG1122@2|Bacteria,1TPH8@1239|Firmicutes,248A2@186801|Clostridia,3WG9K@541000|Ruminococcaceae 186801|Clostridia P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates - - - ko:K16786,ko:K16787 ko02010,map02010 M00582 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35 - - ABC_tran HNDODLHM_00083 1120746.CCNL01000008_gene588 5.32e-171 481.0 COG1092@1|root,COG1092@2|Bacteria 2|Bacteria J Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA rlmI - 2.1.1.191 ko:K06969 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_SAM HNDODLHM_00084 428125.CLOLEP_02990 1.73e-213 602.0 COG1109@1|root,COG1109@2|Bacteria,1TP1X@1239|Firmicutes,2499P@186801|Clostridia,3WGDW@541000|Ruminococcaceae 186801|Clostridia G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate glmM - 5.4.2.10 ko:K03431 ko00520,ko01100,ko01130,map00520,map01100,map01130 - R02060 RC00408 ko00000,ko00001,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV HNDODLHM_00085 428125.CLOLEP_02989 2.52e-199 558.0 COG2255@1|root,COG2255@2|Bacteria,1TR47@1239|Firmicutes,247W0@186801|Clostridia,3WGXE@541000|Ruminococcaceae 186801|Clostridia L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing ruvB - 3.6.4.12 ko:K03551 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvB_C,RuvB_N HNDODLHM_00086 1105031.HMPREF1141_3526 1.37e-62 199.0 COG0632@1|root,COG0632@2|Bacteria,1V3KF@1239|Firmicutes,24JKV@186801|Clostridia,36IEQ@31979|Clostridiaceae 186801|Clostridia L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB ruvA - 3.6.4.12 ko:K03550 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - HHH_5,RuvA_C,RuvA_N HNDODLHM_00087 428125.CLOLEP_02987 2.42e-79 239.0 COG0817@1|root,COG0817@2|Bacteria,1V3N9@1239|Firmicutes,24HMI@186801|Clostridia,3WIS5@541000|Ruminococcaceae 186801|Clostridia L Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group ruvC - 3.1.22.4 ko:K01159 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvC HNDODLHM_00089 1410650.JHWL01000024_gene2093 1.57e-17 90.1 COG3250@1|root,COG3250@2|Bacteria,1TSMY@1239|Firmicutes,24B54@186801|Clostridia,4BWEP@830|Butyrivibrio 186801|Clostridia G Protein of unknown function (DUF2804) - - - - - - - - - - - - DUF2804 HNDODLHM_00091 537013.CLOSTMETH_00841 7.72e-219 624.0 COG0366@1|root,COG4728@1|root,COG0366@2|Bacteria,COG4728@2|Bacteria,1TQFJ@1239|Firmicutes,249Y3@186801|Clostridia,3WGMX@541000|Ruminococcaceae 186801|Clostridia G Alpha amylase, catalytic domain protein - - 3.2.1.133,3.2.1.135,3.2.1.54,3.5.4.33 ko:K01208,ko:K11991 ko00500,ko01100,map00500,map01100 - R02112,R03122,R10223,R11262 RC00477 ko00000,ko00001,ko01000,ko03016 - GH13 - Alpha-amylase,Alpha-amylase_C,DUF1653,Malt_amylase_C HNDODLHM_00092 411483.FAEPRAA2165_00068 1.39e-17 87.4 28J53@1|root,2Z90Z@2|Bacteria,1UZB1@1239|Firmicutes,24EGW@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00093 411467.BACCAP_03130 1.3e-68 229.0 2DPB6@1|root,331CJ@2|Bacteria,1VGRN@1239|Firmicutes,24V17@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00097 428125.CLOLEP_02245 4.77e-85 253.0 COG0691@1|root,COG0691@2|Bacteria,1V3IJ@1239|Firmicutes,24HD6@186801|Clostridia,3WIZR@541000|Ruminococcaceae 186801|Clostridia O the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA smpB - - ko:K03664 - - - - ko00000 - - - SmpB HNDODLHM_00098 1120746.CCNL01000010_gene1321 7.6e-105 306.0 COG0353@1|root,COG0353@2|Bacteria,2NP5N@2323|unclassified Bacteria 2|Bacteria L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - HHH,RecR,Toprim_4 HNDODLHM_00099 1121334.KB911072_gene2672 2.27e-52 167.0 COG0718@1|root,COG0718@2|Bacteria,1VA1S@1239|Firmicutes,24MXH@186801|Clostridia,3WJW1@541000|Ruminococcaceae 186801|Clostridia S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection - - - ko:K09747 - - - - ko00000 - - - YbaB_DNA_bd HNDODLHM_00100 1121334.KB911072_gene2671 3.81e-182 533.0 COG2812@1|root,COG2812@2|Bacteria,1TPS9@1239|Firmicutes,247J7@186801|Clostridia,3WGA1@541000|Ruminococcaceae 186801|Clostridia L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity dnaX - 2.7.7.7 ko:K02343 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNA_pol3_gamma3 HNDODLHM_00101 483218.BACPEC_01832 1.58e-289 795.0 COG2509@1|root,COG2509@2|Bacteria,1TP9I@1239|Firmicutes,247QM@186801|Clostridia,2688C@186813|unclassified Clostridiales 186801|Clostridia S 'oxidoreductase - - - ko:K07137 - - - - ko00000 - - - FAD_binding_2,HI0933_like,Pyr_redox_2,Thi4 HNDODLHM_00102 585394.RHOM_08570 7.35e-107 313.0 COG1207@1|root,COG1207@2|Bacteria 2|Bacteria M glucosamine-1-phosphate N-acetyltransferase activity glmU - 2.3.1.157,2.7.7.23 ko:K04042 ko00520,ko01100,ko01130,map00520,map01100,map01130 M00362 R00416,R05332 RC00002,RC00004,RC00166 ko00000,ko00001,ko00002,ko01000 - - - Hexapep HNDODLHM_00104 1216932.CM240_0432 4.92e-40 141.0 COG0671@1|root,COG0671@2|Bacteria,1VB7J@1239|Firmicutes,24JDD@186801|Clostridia,36JV0@31979|Clostridiaceae 186801|Clostridia I Membrane-associated phospholipid phosphatase - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 HNDODLHM_00105 428125.CLOLEP_01459 2.32e-188 536.0 COG2262@1|root,COG2262@2|Bacteria,1TNZB@1239|Firmicutes,248IU@186801|Clostridia,3WH00@541000|Ruminococcaceae 186801|Clostridia S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 HNDODLHM_00106 1200567.JNKD01000075_gene1090 5.28e-83 251.0 COG0110@1|root,COG0110@2|Bacteria,1RA2T@1224|Proteobacteria,1S3ZZ@1236|Gammaproteobacteria,1Y4GY@135624|Aeromonadales 135624|Aeromonadales S Maltose acetyltransferase - - 2.3.1.79 ko:K00661 - - - - ko00000,ko01000 - - - Hexapep,Hexapep_2,Mac HNDODLHM_00110 476272.RUMHYD_02454 1.02e-143 407.0 COG0461@1|root,COG0461@2|Bacteria,1TREW@1239|Firmicutes,248WM@186801|Clostridia,3XYW9@572511|Blautia 186801|Clostridia F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) pyrE - 2.4.2.10 ko:K00762 ko00240,ko01100,map00240,map01100 M00051 R01870 RC00611 ko00000,ko00001,ko00002,ko01000 - - - Pribosyltran HNDODLHM_00111 428125.CLOLEP_03081 2.47e-61 199.0 COG2003@1|root,COG2003@2|Bacteria,1TQ3K@1239|Firmicutes,2498Z@186801|Clostridia,3WJ3Y@541000|Ruminococcaceae 186801|Clostridia L Belongs to the UPF0758 family radC - - ko:K03630 - - - - ko00000 - - - HHH,RadC HNDODLHM_00112 428125.CLOLEP_03191 0.0 1040.0 COG0556@1|root,COG0556@2|Bacteria,1TPKB@1239|Firmicutes,247P7@186801|Clostridia,3WGH5@541000|Ruminococcaceae 186801|Clostridia L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage uvrB - - ko:K03702 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - Helicase_C,ResIII,UVR,UvrB HNDODLHM_00113 428125.CLOLEP_02601 0.0 1045.0 COG0187@1|root,COG0187@2|Bacteria,1TQ6U@1239|Firmicutes,249NI@186801|Clostridia,3WH8Y@541000|Ruminococcaceae 186801|Clostridia L DNA topoisomerase - - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim HNDODLHM_00114 428125.CLOLEP_02604 0.0 1093.0 COG0188@1|root,COG0188@2|Bacteria,1TPPU@1239|Firmicutes,24CU3@186801|Clostridia,3WG8X@541000|Ruminococcaceae 186801|Clostridia L PFAM DNA gyrase topoisomerase IV, subunit A - - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV HNDODLHM_00115 1105031.HMPREF1141_0303 7.81e-22 87.8 COG1314@1|root,COG1314@2|Bacteria 2|Bacteria U P-P-bond-hydrolysis-driven protein transmembrane transporter activity secG GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - ko:K03075 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecG HNDODLHM_00116 1105031.HMPREF1141_0300 9.59e-15 70.1 2FBQ5@1|root,343V3@2|Bacteria,1W614@1239|Firmicutes,251H7@186801|Clostridia 186801|Clostridia S SigmaK-factor processing regulatory protein BofA - - - - - - - - - - - - BofA HNDODLHM_00117 428125.CLOLEP_02616 6.43e-52 172.0 COG3432@1|root,COG3432@2|Bacteria,1VDQ8@1239|Firmicutes,24MS9@186801|Clostridia,3WRFW@541000|Ruminococcaceae 186801|Clostridia K COG NOG13733 non supervised orthologous group - - - - - - - - - - - - DUF4364 HNDODLHM_00118 742733.HMPREF9469_05806 3.7e-51 166.0 COG1959@1|root,COG1959@2|Bacteria,1V3QB@1239|Firmicutes,24JIV@186801|Clostridia,2208Z@1506553|Lachnoclostridium 186801|Clostridia K Transcriptional regulator - - - - - - - - - - - - Rrf2 HNDODLHM_00119 411474.COPEUT_00642 1.41e-125 363.0 COG0396@1|root,COG0396@2|Bacteria,1TQ98@1239|Firmicutes,2489I@186801|Clostridia 186801|Clostridia O FeS assembly ATPase SufC sufC - - ko:K09013 - - - - ko00000,ko02000 - - - ABC_tran HNDODLHM_00120 411489.CLOL250_02466 5.83e-296 812.0 COG0719@1|root,COG0719@2|Bacteria,1TQ21@1239|Firmicutes,249IU@186801|Clostridia,36G21@31979|Clostridiaceae 186801|Clostridia O FeS assembly protein SufB sufB - - ko:K07033,ko:K09014 - - - - ko00000 - - - UPF0051 HNDODLHM_00121 658086.HMPREF0994_01046 1.51e-92 288.0 COG0719@1|root,COG0719@2|Bacteria,1TRQJ@1239|Firmicutes,24ANC@186801|Clostridia,27MSE@186928|unclassified Lachnospiraceae 186801|Clostridia O Uncharacterized protein family (UPF0051) sufD - - ko:K07033,ko:K09015 - - - - ko00000 - - - UPF0051 HNDODLHM_00122 742733.HMPREF9469_05810 4.39e-199 562.0 COG0520@1|root,COG0520@2|Bacteria,1TQ1W@1239|Firmicutes,249CS@186801|Clostridia,21Z26@1506553|Lachnoclostridium 186801|Clostridia E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine sufS - 2.8.1.7,4.4.1.16 ko:K11717 ko00450,ko01100,map00450,map01100 - R03599,R11528 RC00961,RC01789,RC02313 ko00000,ko00001,ko01000 - - - Aminotran_5 HNDODLHM_00123 1408436.JHXY01000010_gene886 2.92e-67 207.0 COG0822@1|root,COG0822@2|Bacteria,1V3H9@1239|Firmicutes,24HDD@186801|Clostridia,25WT8@186806|Eubacteriaceae 186801|Clostridia C SUF system FeS assembly protein, NifU family iscU - - ko:K04488 - - - - ko00000 - - - NifU_N HNDODLHM_00126 1392493.JIAB01000001_gene949 1.63e-158 448.0 COG2145@1|root,COG2145@2|Bacteria,1V1R6@1239|Firmicutes,248AC@186801|Clostridia,27IRB@186928|unclassified Lachnospiraceae 186801|Clostridia H Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ) thiM - 2.7.1.50 ko:K00878 ko00730,ko01100,map00730,map01100 M00127 R04448 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HK HNDODLHM_00127 411474.COPEUT_00172 7.14e-106 310.0 COG0352@1|root,COG0352@2|Bacteria,1V3ZR@1239|Firmicutes,24DG3@186801|Clostridia 186801|Clostridia H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE - 2.5.1.3 ko:K00788 ko00730,ko01100,map00730,map01100 M00127 R03223,R10712 RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI HNDODLHM_00128 1235799.C818_03342 6.22e-70 219.0 COG0637@1|root,COG0637@2|Bacteria,1V1DF@1239|Firmicutes,24DES@186801|Clostridia,27N5M@186928|unclassified Lachnospiraceae 186801|Clostridia S haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD_2 HNDODLHM_00129 411461.DORFOR_02063 9.55e-147 418.0 COG0351@1|root,COG0351@2|Bacteria,1TQ4A@1239|Firmicutes,2483H@186801|Clostridia,27UR1@189330|Dorea 186801|Clostridia H Carbohydrate kinase thiD - 2.7.1.49,2.7.4.7 ko:K00941 ko00730,ko01100,map00730,map01100 M00127 R03471,R04509 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Phos_pyr_kin HNDODLHM_00130 411461.DORFOR_02064 2.49e-195 551.0 COG1457@1|root,COG1457@2|Bacteria,1TTBN@1239|Firmicutes,248EP@186801|Clostridia,27VZ9@189330|Dorea 186801|Clostridia F COG COG1457 Purine-cytosine permease and related proteins cytX - - - - - - - - - - - Transp_cyt_pur HNDODLHM_00131 742735.HMPREF9467_03198 1.11e-259 720.0 COG1672@1|root,COG1672@2|Bacteria,1TR21@1239|Firmicutes,24ADD@186801|Clostridia,21ZF4@1506553|Lachnoclostridium 186801|Clostridia S ATPase domain predominantly from Archaea - - - ko:K06921 - - - - ko00000 - - - ATPase_2,DUF234 HNDODLHM_00132 428125.CLOLEP_01742 2.35e-82 248.0 COG2002@1|root,COG2002@2|Bacteria,1V02A@1239|Firmicutes,248XR@186801|Clostridia,3WITH@541000|Ruminococcaceae 186801|Clostridia K stage V sporulation protein T spoVT - - ko:K04769 - - - - ko00000,ko03000 - - - MazE_antitoxin,SpoVT_C HNDODLHM_00134 1120746.CCNL01000009_gene1026 6.84e-276 770.0 COG0018@1|root,COG0018@2|Bacteria,2NNSE@2323|unclassified Bacteria 2|Bacteria J Arginyl tRNA synthetase N terminal dom argS GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 ko:K01887 ko00970,map00970 M00359,M00360 R03646 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - iAF987.Gmet_1434 Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d HNDODLHM_00135 1121335.Clst_2422 3.37e-12 67.4 COG4506@1|root,COG4506@2|Bacteria,1U49U@1239|Firmicutes,259FV@186801|Clostridia,3WKB8@541000|Ruminococcaceae 186801|Clostridia S Domain of unknown function (DUF1934) - - - - - - - - - - - - DUF1934 HNDODLHM_00136 1120746.CCNL01000009_gene1028 2.09e-111 329.0 COG0796@1|root,COG0796@2|Bacteria,2NP3D@2323|unclassified Bacteria 2|Bacteria M Provides the (R)-glutamate required for cell wall biosynthesis murI GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 5.1.1.3 ko:K01776 ko00471,ko01100,map00471,map01100 - R00260 RC00302 ko00000,ko00001,ko01000,ko01011 - - - Asp_Glu_race HNDODLHM_00137 428125.CLOLEP_02928 1.34e-54 184.0 2C2S8@1|root,33RGY@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - HNDODLHM_00138 1105031.HMPREF1141_0706 1.22e-26 97.4 COG0267@1|root,COG0267@2|Bacteria,1VEJ4@1239|Firmicutes,24QK0@186801|Clostridia,36MJQ@31979|Clostridiaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bL33 family rpmG - - ko:K02913 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L33 HNDODLHM_00140 428125.CLOLEP_02931 6.72e-84 251.0 COG0250@1|root,COG0250@2|Bacteria,1TR3P@1239|Firmicutes,248XB@186801|Clostridia,3WJ0G@541000|Ruminococcaceae 186801|Clostridia K Participates in transcription elongation, termination and antitermination nusG - - ko:K02601 - - - - ko00000,ko03009,ko03021 - - - KOW,NusG HNDODLHM_00141 1105031.HMPREF1141_0709 2.78e-83 247.0 COG0080@1|root,COG0080@2|Bacteria,1V1BS@1239|Firmicutes,24FSQ@186801|Clostridia,36I00@31979|Clostridiaceae 186801|Clostridia J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors rplK - - ko:K02867 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L11,Ribosomal_L11_N HNDODLHM_00142 1121334.KB911074_gene2487 3.35e-135 386.0 COG0081@1|root,COG0081@2|Bacteria,1TPTS@1239|Firmicutes,247JB@186801|Clostridia,3WH4A@541000|Ruminococcaceae 186801|Clostridia J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release rplA - - ko:K02863 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L1 HNDODLHM_00143 1235835.C814_02957 6.67e-46 155.0 COG0244@1|root,COG0244@2|Bacteria,1V3JJ@1239|Firmicutes,24G9R@186801|Clostridia,3WIH7@541000|Ruminococcaceae 186801|Clostridia J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors rplJ - - ko:K02864 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L10 HNDODLHM_00144 699246.HMPREF0868_1272 2.77e-48 157.0 COG0222@1|root,COG0222@2|Bacteria,1V6EI@1239|Firmicutes,24JAC@186801|Clostridia,269AI@186813|unclassified Clostridiales 186801|Clostridia J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation rplL - - ko:K02935 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L12,Ribosomal_L12_N HNDODLHM_00145 1160721.RBI_II00479 0.0 989.0 COG1866@1|root,COG1866@2|Bacteria,1TPQV@1239|Firmicutes,248JE@186801|Clostridia,3WGXZ@541000|Ruminococcaceae 186801|Clostridia H Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA pckA - 4.1.1.49 ko:K01610 ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200 M00003,M00170 R00341 RC00002,RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPCK_ATP HNDODLHM_00146 553973.CLOHYLEM_06959 1.46e-11 65.9 2BVD7@1|root,32QT8@2|Bacteria,1V6S8@1239|Firmicutes,24JJP@186801|Clostridia,2215X@1506553|Lachnoclostridium 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00147 1034807.FBFL15_1362 1.24e-31 124.0 COG2819@1|root,COG2819@2|Bacteria,4NH6C@976|Bacteroidetes,1HY0J@117743|Flavobacteriia,2NUQN@237|Flavobacterium 976|Bacteroidetes S Putative esterase - - - - - - - - - - - - Esterase HNDODLHM_00148 1410628.JNKS01000020_gene1616 2.06e-50 166.0 COG0454@1|root,COG0456@2|Bacteria,1V1RG@1239|Firmicutes,24IJG@186801|Clostridia,27MSA@186928|unclassified Lachnospiraceae 186801|Clostridia K Acetyltransferase (GNAT) domain paiA - 2.3.1.57 ko:K22441 - - - - ko00000,ko01000 - - - Acetyltransf_1,Acetyltransf_10 HNDODLHM_00149 428125.CLOLEP_00762 4.62e-96 283.0 COG4869@1|root,COG4869@2|Bacteria,1V242@1239|Firmicutes,24EHP@186801|Clostridia,3WRUR@541000|Ruminococcaceae 186801|Clostridia Q Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate - - 2.3.1.8 ko:K15024 ko00430,ko00620,ko00640,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00720,map01100,map01120,map01200 M00579 R00230,R00921 RC00004,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000 - - - PTAC HNDODLHM_00150 428125.CLOLEP_00759 3.58e-106 309.0 COG1573@1|root,COG1573@2|Bacteria,1V267@1239|Firmicutes,24DFW@186801|Clostridia,3WIGX@541000|Ruminococcaceae 186801|Clostridia L Uracil-DNA glycosylase udgA - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG HNDODLHM_00151 903814.ELI_1949 1.72e-115 336.0 COG1136@1|root,COG1136@2|Bacteria,1TQC9@1239|Firmicutes,248Z6@186801|Clostridia,25V4X@186806|Eubacteriaceae 186801|Clostridia V ABC-type antimicrobial peptide transport system, ATPase component - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00152 1280689.AUJC01000008_gene2943 3.55e-175 551.0 COG0577@1|root,COG1511@1|root,COG0577@2|Bacteria,COG1511@2|Bacteria,1TPHU@1239|Firmicutes,248RV@186801|Clostridia,36E94@31979|Clostridiaceae 186801|Clostridia V Permease - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD HNDODLHM_00153 1105031.HMPREF1141_0201 0.0 878.0 COG0173@1|root,COG0173@2|Bacteria,1TPCN@1239|Firmicutes,247Z3@186801|Clostridia,36EHV@31979|Clostridiaceae 186801|Clostridia J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) aspS - 6.1.1.12 ko:K01876 ko00970,map00970 M00359,M00360 R05577 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GAD,tRNA-synt_2,tRNA_anti-codon HNDODLHM_00154 1105031.HMPREF1141_0202 3.49e-22 89.4 COG0721@1|root,COG0721@2|Bacteria 2|Bacteria J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatC - 6.3.5.6,6.3.5.7 ko:K02435 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - iAF987.Gmet_0076 Glu-tRNAGln HNDODLHM_00155 1120746.CCNL01000014_gene2197 2.52e-243 681.0 COG0154@1|root,COG0154@2|Bacteria,2NNSD@2323|unclassified Bacteria 2|Bacteria J Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) gatA - 6.3.5.6,6.3.5.7 ko:K02433 ko00970,ko01100,map00970,map01100 - R03905,R04212 RC00010 ko00000,ko00001,ko01000,ko03029 - - - Amidase HNDODLHM_00156 1120746.CCNL01000014_gene2198 2.71e-222 626.0 COG0064@1|root,COG0064@2|Bacteria,2NNPK@2323|unclassified Bacteria 2|Bacteria J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) gatB GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.12,6.3.5.6,6.3.5.7 ko:K01876,ko:K02434 ko00970,ko01100,map00970,map01100 M00359,M00360 R03905,R04212,R05577 RC00010,RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GatB_N,GatB_Yqey HNDODLHM_00158 1280679.ATVX01000002_gene807 6.3e-295 809.0 COG1350@1|root,COG1350@2|Bacteria,1UI01@1239|Firmicutes,25E8Q@186801|Clostridia,4BWG1@830|Butyrivibrio 186801|Clostridia E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB - 4.2.1.20 ko:K06001 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP HNDODLHM_00159 411474.COPEUT_02135 2.43e-93 285.0 COG0226@1|root,COG0226@2|Bacteria,1TQ5X@1239|Firmicutes,248QU@186801|Clostridia 186801|Clostridia P phosphate binding protein pstS - - ko:K02040 ko02010,ko02020,ko05152,map02010,map02020,map05152 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - PBP_like_2 HNDODLHM_00160 1232443.BAIA02000126_gene1111 1.97e-134 389.0 COG0573@1|root,COG0573@2|Bacteria,1TSPP@1239|Firmicutes,249KQ@186801|Clostridia,267YJ@186813|unclassified Clostridiales 186801|Clostridia P probably responsible for the translocation of the substrate across the membrane pstC - - ko:K02037 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - BPD_transp_1 HNDODLHM_00161 622312.ROSEINA2194_04398 2.69e-124 364.0 COG0581@1|root,COG0581@2|Bacteria,1TP74@1239|Firmicutes,248C4@186801|Clostridia 186801|Clostridia P phosphate transport system permease pstA - - ko:K02038 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - BPD_transp_1 HNDODLHM_00162 1121115.AXVN01000010_gene2779 2.61e-146 416.0 COG1117@1|root,COG1117@2|Bacteria,1TP1M@1239|Firmicutes,247RD@186801|Clostridia,3XYGV@572511|Blautia 186801|Clostridia P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system pstB - 3.6.3.27 ko:K02036 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.7 - - ABC_tran HNDODLHM_00163 1232443.BAIA02000126_gene1108 4.65e-64 204.0 COG0704@1|root,COG0704@2|Bacteria,1URN3@1239|Firmicutes,24FTM@186801|Clostridia,268P9@186813|unclassified Clostridiales 186801|Clostridia P Plays a role in the regulation of phosphate uptake phoU GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - ko:K02039 - - - - ko00000 - - - PhoU HNDODLHM_00164 357809.Cphy_2827 1.48e-89 270.0 COG0745@1|root,COG0745@2|Bacteria,1TQY9@1239|Firmicutes,24D6A@186801|Clostridia,22457@1506553|Lachnoclostridium 186801|Clostridia K response regulator receiver phoB - - ko:K07658 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C HNDODLHM_00165 180332.JTGN01000012_gene279 1.13e-122 379.0 COG5002@1|root,COG5002@2|Bacteria,1TQ1H@1239|Firmicutes,247VG@186801|Clostridia 186801|Clostridia T Histidine kinase phoR - 2.7.13.3 ko:K07636 ko02020,map02020 M00434 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,PAS,PAS_4,sCache_like HNDODLHM_00166 357809.Cphy_2825 9.04e-229 652.0 COG1283@1|root,COG1283@2|Bacteria,1TP4K@1239|Firmicutes,247KT@186801|Clostridia,21XXW@1506553|Lachnoclostridium 186801|Clostridia P Psort location CytoplasmicMembrane, score - - - ko:K03324 - - - - ko00000,ko02000 2.A.58.2 - - Na_Pi_cotrans,PhoU HNDODLHM_00167 1160721.RBI_I01635 5.5e-93 278.0 COG1272@1|root,COG1272@2|Bacteria,1TSFK@1239|Firmicutes,24CPT@186801|Clostridia,3WIMP@541000|Ruminococcaceae 186801|Clostridia S protein, hemolysin III - - - ko:K11068 - - - - ko00000,ko02042 - - - HlyIII HNDODLHM_00168 633697.EubceDRAFT1_1554 2.26e-130 375.0 COG1131@1|root,COG1131@2|Bacteria,1TQIH@1239|Firmicutes,248WG@186801|Clostridia,25W6H@186806|Eubacteriaceae 186801|Clostridia V ABC transporter - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00169 1123075.AUDP01000008_gene1754 5.87e-65 227.0 COG2898@1|root,COG2898@2|Bacteria,1U5FR@1239|Firmicutes,248XI@186801|Clostridia,3WIHF@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran_2 HNDODLHM_00170 585394.RHOM_10215 0.0 950.0 COG0369@1|root,COG1151@2|Bacteria,1TP8X@1239|Firmicutes,247IN@186801|Clostridia 186801|Clostridia C Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O hcp - 1.7.99.1 ko:K05601 ko00910,map00910 - R00143 RC02797 ko00000,ko00001,ko01000 - - - Prismane HNDODLHM_00171 1120746.CCNL01000017_gene2958 1.01e-43 162.0 COG0392@1|root,COG0392@2|Bacteria 2|Bacteria M lysyltransferase activity mprF - - ko:K07027 - - - - ko00000,ko02000 4.D.2 - - LPG_synthase_TM HNDODLHM_00172 1124982.MSI_13600 9.58e-90 266.0 2DBP0@1|root,2ZA6P@2|Bacteria,2J7V8@203691|Spirochaetes 203691|Spirochaetes - - - - - - - - - - - - - - - HNDODLHM_00174 1226322.HMPREF1545_02484 4.03e-50 163.0 COG0517@1|root,COG0517@2|Bacteria,1V7XE@1239|Firmicutes,24HF5@186801|Clostridia,2N7DV@216572|Oscillospiraceae 186801|Clostridia S Domain in cystathionine beta-synthase and other proteins. - - - - - - - - - - - - CBS HNDODLHM_00175 138119.DSY2435 1.88e-80 247.0 COG0745@1|root,COG0745@2|Bacteria,1V21C@1239|Firmicutes,24GEM@186801|Clostridia,264DW@186807|Peptococcaceae 186801|Clostridia K Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_00176 1160721.RBI_I01302 6.97e-248 689.0 COG0741@1|root,COG0741@2|Bacteria,1V3F0@1239|Firmicutes,249C4@186801|Clostridia,3WSRH@541000|Ruminococcaceae 186801|Clostridia M Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - - - - - - - - - - CHAP,Lysozyme_like HNDODLHM_00177 1160721.RBI_I01303 4.12e-79 235.0 COG1396@1|root,COG1396@2|Bacteria,1V62J@1239|Firmicutes,24I2F@186801|Clostridia,3WRJH@541000|Ruminococcaceae 186801|Clostridia K Helix-turn-helix domain - - - - - - - - - - - - HTH_3 HNDODLHM_00178 457412.RSAG_00304 1.38e-37 125.0 COG3177@1|root,COG3177@2|Bacteria 2|Bacteria D Filamentation induced by cAMP protein fic - - - - - - - - - - - - Fic,HTH_17 HNDODLHM_00179 1160721.RBI_I01304 7.45e-167 466.0 COG0745@1|root,COG0745@2|Bacteria,1TT12@1239|Firmicutes,24AB1@186801|Clostridia,3WIXV@541000|Ruminococcaceae 186801|Clostridia T response regulator receiver - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_00180 457412.RSAG_00302 4.37e-284 777.0 COG0642@1|root,COG2205@2|Bacteria,1TT7F@1239|Firmicutes,247UJ@186801|Clostridia,3WJ5X@541000|Ruminococcaceae 186801|Clostridia T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA HNDODLHM_00181 1160721.RBI_I01306 3.78e-149 421.0 COG1136@1|root,COG1136@2|Bacteria,1TP6H@1239|Firmicutes,247JJ@186801|Clostridia,3WH0X@541000|Ruminococcaceae 186801|Clostridia V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00182 944565.HMPREF9127_1108 8.58e-88 266.0 COG2148@1|root,COG2148@2|Bacteria,1TP7V@1239|Firmicutes,25AZD@186801|Clostridia,22JA8@1570339|Peptoniphilaceae 186801|Clostridia M Bacterial sugar transferase - - - - - - - - - - - - Bac_transf HNDODLHM_00183 428125.CLOLEP_01530 4.58e-49 183.0 COG3307@1|root,COG3307@2|Bacteria,1VK2G@1239|Firmicutes,24S8D@186801|Clostridia 186801|Clostridia M O-Antigen ligase - - - - - - - - - - - - Wzy_C HNDODLHM_00184 1203606.HMPREF1526_02738 1.92e-283 795.0 COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,1TQ38@1239|Firmicutes,2484Z@186801|Clostridia,36E6X@31979|Clostridiaceae 186801|Clostridia H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source nadE - 6.3.5.1 ko:K01950 ko00760,ko01100,map00760,map01100 M00115 R00257 RC00010,RC00100 ko00000,ko00001,ko00002,ko01000 - - - CN_hydrolase,NAD_synthase HNDODLHM_00186 428125.CLOLEP_03310 4.88e-56 180.0 COG1522@1|root,COG1522@2|Bacteria,1V3PB@1239|Firmicutes,24I3N@186801|Clostridia,3WIWV@541000|Ruminococcaceae 186801|Clostridia K Transcriptional regulator, AsnC family Lrp - - - - - - - - - - - AsnC_trans_reg,HTH_24 HNDODLHM_00187 428125.CLOLEP_03309 8.95e-210 588.0 COG0436@1|root,COG0436@2|Bacteria,1TP0J@1239|Firmicutes,247NQ@186801|Clostridia,3WGAJ@541000|Ruminococcaceae 186801|Clostridia E Aminotransferase aspC - - ko:K10907 - - - - ko00000,ko01000,ko01007 - - - Aminotran_1_2 HNDODLHM_00188 428125.CLOLEP_03308 7e-74 235.0 COG1947@1|root,COG1947@2|Bacteria,1TPXV@1239|Firmicutes,24898@186801|Clostridia,3WH6J@541000|Ruminococcaceae 186801|Clostridia I Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE - 2.7.1.148 ko:K00919 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N HNDODLHM_00189 428125.CLOLEP_03307 5.67e-62 199.0 2AUKD@1|root,31K93@2|Bacteria,1V6PK@1239|Firmicutes,24J91@186801|Clostridia,3WJSP@541000|Ruminococcaceae 186801|Clostridia S stage II sporulation protein R spoIIR - - ko:K06387 - - - - ko00000 - - - Spore_II_R HNDODLHM_00190 428125.CLOLEP_03305 1.42e-252 752.0 COG3857@1|root,COG3857@2|Bacteria,1TQJW@1239|Firmicutes,2487T@186801|Clostridia,3WG8U@541000|Ruminococcaceae 186801|Clostridia L ATP-dependent helicase deoxyribonuclease subunit B addB - 3.6.4.12 ko:K16899 - - - - ko00000,ko01000,ko03400 - - - Exonuc_V_gamma,PDDEXK_1,UvrD_C HNDODLHM_00191 1105031.HMPREF1141_2660 1.12e-287 847.0 COG1074@1|root,COG1074@2|Bacteria,1TQ35@1239|Firmicutes,248ZF@186801|Clostridia,36E2W@31979|Clostridiaceae 186801|Clostridia L ATP-dependent helicase nuclease subunit A addA - 3.6.4.12 ko:K16898 - - - - ko00000,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C HNDODLHM_00192 1410630.JNKP01000001_gene1813 5.84e-06 53.1 COG3247@1|root,COG3247@2|Bacteria,1VFKP@1239|Firmicutes,24RBX@186801|Clostridia,27NK8@186928|unclassified Lachnospiraceae 186801|Clostridia S Short repeat of unknown function (DUF308) - - - - - - - - - - - - DUF308 HNDODLHM_00193 1410670.JHXF01000010_gene522 7.55e-146 424.0 COG0540@1|root,COG0540@2|Bacteria,1TQ96@1239|Firmicutes,2496D@186801|Clostridia,3WG83@541000|Ruminococcaceae 186801|Clostridia F Belongs to the ATCase OTCase family pyrB - 2.1.3.2 ko:K00609 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R01397 RC00064,RC02850 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N,PyrI_C HNDODLHM_00194 411470.RUMGNA_01877 3.26e-18 77.0 2EG1V@1|root,339TV@2|Bacteria,1VKAZ@1239|Firmicutes,24UGV@186801|Clostridia,3Y0SX@572511|Blautia 186801|Clostridia S COG NOG17973 non supervised orthologous group - - - - - - - - - - - - DUF4250 HNDODLHM_00197 457396.CSBG_03069 1.23e-115 350.0 COG0038@1|root,COG0038@2|Bacteria,1TPX0@1239|Firmicutes,247R4@186801|Clostridia,36FR4@31979|Clostridiaceae 186801|Clostridia P Chloride channel eriC - - ko:K03281 - - - - ko00000 2.A.49 - - CBS,Voltage_CLC HNDODLHM_00198 585394.RHOM_14915 7.2e-172 486.0 COG3049@1|root,COG3049@2|Bacteria,1TPZS@1239|Firmicutes,24B0E@186801|Clostridia 186801|Clostridia M Linear amide C-N hydrolase, choloylglycine hydrolase family protein cbh - 3.5.1.24 ko:K01442 ko00120,ko00121,ko01100,map00120,map00121,map01100 - R02797,R03975,R03977,R04486,R04487,R05835 RC00090,RC00096 ko00000,ko00001,ko01000 - - - CBAH HNDODLHM_00200 411469.EUBHAL_01061 5.75e-213 596.0 COG0786@1|root,COG0786@2|Bacteria,1TQA4@1239|Firmicutes,247WX@186801|Clostridia,25V8Y@186806|Eubacteriaceae 186801|Clostridia P Catalyzes the sodium-dependent transport of glutamate gltS - - ko:K03312 - - - - ko00000,ko02000 2.A.27 - - Glt_symporter,NMT1_3 HNDODLHM_00201 471875.RUMLAC_02100 9.63e-102 308.0 COG2358@1|root,COG2358@2|Bacteria,1TPXW@1239|Firmicutes,2489U@186801|Clostridia,3WIYW@541000|Ruminococcaceae 186801|Clostridia S TRAP transporter solute receptor, TAXI family bcsP - - ko:K07080 - - - - ko00000 - - - NMT1_3 HNDODLHM_00202 428125.CLOLEP_02204 5.15e-159 458.0 COG0206@1|root,COG0206@2|Bacteria,1TP6W@1239|Firmicutes,247Z5@186801|Clostridia,3WH3G@541000|Ruminococcaceae 186801|Clostridia D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity ftsZ - - ko:K03531 ko04112,map04112 - - - ko00000,ko00001,ko02048,ko03036,ko04812 - - - FtsZ_C,Tubulin HNDODLHM_00204 428125.CLOLEP_02201 2.29e-181 519.0 COG0766@1|root,COG0766@2|Bacteria,1TPAU@1239|Firmicutes,2488W@186801|Clostridia,3WG8Y@541000|Ruminococcaceae 186801|Clostridia M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA2 - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase HNDODLHM_00205 428125.CLOLEP_02200 7.77e-177 503.0 COG0707@1|root,COG0707@2|Bacteria,1TQFT@1239|Firmicutes,248IA@186801|Clostridia,3WGFH@541000|Ruminococcaceae 186801|Clostridia M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) murG - 2.4.1.227 ko:K02563 ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112 - R05032,R05662 RC00005,RC00049 ko00000,ko00001,ko01000,ko01011 - GT28 - Glyco_tran_28_C,Glyco_transf_28 HNDODLHM_00206 1121334.KB911066_gene756 1.42e-123 371.0 COG0772@1|root,COG0772@2|Bacteria,1TPT7@1239|Firmicutes,24894@186801|Clostridia,3WHWW@541000|Ruminococcaceae 186801|Clostridia D Belongs to the SEDS family ftsW - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE HNDODLHM_00207 428125.CLOLEP_02197 5.5e-124 366.0 COG0472@1|root,COG0472@2|Bacteria,1TP8W@1239|Firmicutes,247S7@186801|Clostridia,3WHMP@541000|Ruminococcaceae 186801|Clostridia M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan mraY - 2.7.8.13 ko:K01000 ko00550,ko01100,ko01502,map00550,map01100,map01502 - R05629,R05630 RC00002,RC02753 ko00000,ko00001,ko01000,ko01011 9.B.146 - - Glycos_transf_4,MraY_sig1 HNDODLHM_00208 1105031.HMPREF1141_1551 1.82e-231 672.0 COG0768@1|root,COG0768@2|Bacteria,1TP93@1239|Firmicutes,248KB@186801|Clostridia,36DJT@31979|Clostridiaceae 186801|Clostridia M stage V sporulation protein D spoVD - 3.4.16.4 ko:K03587,ko:K08384 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011,ko03036 - - - PASTA,PBP_dimer,Transpeptidase HNDODLHM_00210 428125.CLOLEP_02193 2.14e-136 395.0 COG0275@1|root,COG0275@2|Bacteria,1TNZV@1239|Firmicutes,248B5@186801|Clostridia,3WH07@541000|Ruminococcaceae 186801|Clostridia J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA rsmH - 2.1.1.199 ko:K03438 - - - - ko00000,ko01000,ko03009 - - - Methyltransf_5 HNDODLHM_00211 1226325.HMPREF1548_05643 6.15e-31 115.0 COG2001@1|root,COG2001@2|Bacteria,1V3JD@1239|Firmicutes,24HB9@186801|Clostridia,36I1C@31979|Clostridiaceae 186801|Clostridia K Belongs to the MraZ family mraZ - - ko:K03925 - - - - ko00000 - - - MraZ HNDODLHM_00212 1120746.CCNL01000010_gene1105 3.1e-32 119.0 COG0711@1|root,COG0711@2|Bacteria 2|Bacteria C ATP synthesis coupled proton transport - - - - - - - - - - - - - HNDODLHM_00213 1120746.CCNL01000010_gene1104 5.13e-69 213.0 COG0669@1|root,COG0669@2|Bacteria,2NPDV@2323|unclassified Bacteria 2|Bacteria H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate coaD GO:0003674,GO:0003824,GO:0004595,GO:0005488,GO:0005515,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0015939,GO:0015940,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046390,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 ko:K00954 ko00770,ko01100,map00770,map01100 M00120 R03035 RC00002 ko00000,ko00001,ko00002,ko01000 - - iPC815.YPO0053,iSDY_1059.SDY_4064 CTP_transf_like HNDODLHM_00214 428125.CLOLEP_02183 8.18e-70 218.0 COG0742@1|root,COG0742@2|Bacteria,1V3JF@1239|Firmicutes,24JHR@186801|Clostridia,3WJC4@541000|Ruminococcaceae 186801|Clostridia L RNA methyltransferase, RsmD family rsmD - 2.1.1.171 ko:K08316 - - R07234 RC00003 ko00000,ko01000,ko03009 - - - Cons_hypoth95 HNDODLHM_00215 1121334.KB911069_gene1763 2.13e-274 770.0 COG0322@1|root,COG0322@2|Bacteria,1TP4B@1239|Firmicutes,247TQ@186801|Clostridia,3WH2A@541000|Ruminococcaceae 186801|Clostridia L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC - - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N HNDODLHM_00216 537013.CLOSTMETH_02429 8.8e-48 153.0 COG1925@1|root,COG1925@2|Bacteria,1VA0R@1239|Firmicutes,24QIP@186801|Clostridia,3WK5I@541000|Ruminococcaceae 186801|Clostridia G phosphocarrier, HPr family ptsH - - ko:K11184,ko:K11189 - - - - ko00000,ko02000 4.A.2.1 - - PTS-HPr HNDODLHM_00217 428125.CLOLEP_02178 2.86e-125 361.0 COG0336@1|root,COG0336@2|Bacteria,1TPBV@1239|Firmicutes,247JF@186801|Clostridia,3WH8Z@541000|Ruminococcaceae 186801|Clostridia J Belongs to the RNA methyltransferase TrmD family trmD - 2.1.1.228 ko:K00554 - - R00597 RC00003,RC00334 ko00000,ko01000,ko03016 - - - tRNA_m1G_MT HNDODLHM_00218 1105031.HMPREF1141_0216 3.48e-59 189.0 COG0806@1|root,COG0806@2|Bacteria,1V6HD@1239|Firmicutes,24I1G@186801|Clostridia,36IPC@31979|Clostridiaceae 186801|Clostridia J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes rimM - - ko:K02860 - - - - ko00000,ko03009 - - - PRC,RimM HNDODLHM_00219 1105031.HMPREF1141_0222 2.57e-298 845.0 COG1193@1|root,COG1193@2|Bacteria,1TP5W@1239|Firmicutes,248YK@186801|Clostridia,36EFY@31979|Clostridiaceae 186801|Clostridia L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity mutS2 - - ko:K07456 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_V,Smr HNDODLHM_00220 1120746.CCNL01000010_gene1088 9.29e-81 250.0 COG1381@1|root,COG1381@2|Bacteria 2|Bacteria L Involved in DNA repair and RecF pathway recombination recO GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - ko:K03584 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecO_C,RecO_N HNDODLHM_00222 428125.CLOLEP_02165 9.94e-148 424.0 COG1159@1|root,COG1159@2|Bacteria,1TP3R@1239|Firmicutes,24876@186801|Clostridia,3WGJ2@541000|Ruminococcaceae 186801|Clostridia S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism era - - ko:K03595 - - - - ko00000,ko03009,ko03029 - - - KH_2,MMR_HSR1 HNDODLHM_00223 877415.JNJQ01000002_gene2441 6.33e-12 66.2 COG0818@1|root,COG0818@2|Bacteria,1TU1J@1239|Firmicutes,3VRKX@526524|Erysipelotrichia 526524|Erysipelotrichia M Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DAGK_prokar HNDODLHM_00224 1121334.KB911069_gene1749 1.67e-82 248.0 COG0319@1|root,COG0319@2|Bacteria,1V6BU@1239|Firmicutes,24MQZ@186801|Clostridia,3WIDY@541000|Ruminococcaceae 186801|Clostridia S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA ybeY - 3.5.4.5 ko:K01489,ko:K07042 ko00240,ko00983,ko01100,map00240,map00983,map01100 - R01878,R02485,R08221 RC00074,RC00514 ko00000,ko00001,ko01000,ko03009 - - - UPF0054 HNDODLHM_00225 1105031.HMPREF1141_0230 2.23e-182 514.0 COG1702@1|root,COG1702@2|Bacteria,1TP35@1239|Firmicutes,247ZJ@186801|Clostridia,36UI2@31979|Clostridiaceae 186801|Clostridia T PhoH-like protein phoH - - ko:K06217 - - - - ko00000 - - - PhoH HNDODLHM_00226 1120746.CCNL01000010_gene1094 9.77e-29 107.0 COG2739@1|root,COG2739@2|Bacteria 2|Bacteria S Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein ylxM GO:0003674,GO:0008150,GO:0030234,GO:0030695,GO:0050790,GO:0060589,GO:0065007,GO:0065009,GO:0098772 - ko:K09787 - - - - ko00000 - - - UPF0122 HNDODLHM_00227 1120746.CCNL01000010_gene1095 2.43e-221 622.0 COG0541@1|root,COG0541@2|Bacteria,2NNT9@2323|unclassified Bacteria 2|Bacteria U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY ffh GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 3.6.5.4 ko:K03106 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko01000,ko02044 3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9 - - SRP54,SRP54_N,SRP_SPB HNDODLHM_00228 445972.ANACOL_00448 5.61e-39 130.0 COG0228@1|root,COG0228@2|Bacteria,1VA0X@1239|Firmicutes,24MND@186801|Clostridia,3WJSQ@541000|Ruminococcaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bS16 family rpsP - - ko:K02959 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S16 HNDODLHM_00229 1120746.CCNL01000010_gene1097 7.53e-31 110.0 COG1837@1|root,COG1837@2|Bacteria 2|Bacteria L Belongs to the UPF0109 family ylqC - - ko:K06960 - - - - ko00000 - - - KH_4 HNDODLHM_00230 411467.BACCAP_01285 6.58e-259 717.0 COG1373@1|root,COG1373@2|Bacteria,1TQ8Z@1239|Firmicutes,258AH@186801|Clostridia,26BAA@186813|unclassified Clostridiales 186801|Clostridia S Domain of unknown function (DUF4143) - - - - - - - - - - - - AAA_14,DUF4143 HNDODLHM_00231 1280706.AUJE01000061_gene1009 1.45e-131 387.0 COG0338@1|root,COG3177@1|root,COG0338@2|Bacteria,COG3177@2|Bacteria,1TRDX@1239|Firmicutes,4H6XX@909932|Negativicutes 909932|Negativicutes L D12 class N6 adenine-specific DNA methyltransferase - - - - - - - - - - - - MethyltransfD12 HNDODLHM_00232 1042156.CXIVA_01080 1.16e-172 489.0 COG1087@1|root,COG1087@2|Bacteria,1TQ7N@1239|Firmicutes,247M9@186801|Clostridia,36DGP@31979|Clostridiaceae 186801|Clostridia M Belongs to the NAD(P)-dependent epimerase dehydratase family galE - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd HNDODLHM_00233 585394.RHOM_11680 2.21e-104 303.0 COG0652@1|root,COG0652@2|Bacteria,1TRHW@1239|Firmicutes,247XN@186801|Clostridia 186801|Clostridia O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides ppiB - 5.2.1.8 ko:K03768 - - - - ko00000,ko01000,ko03110 - - - Pro_isomerase HNDODLHM_00234 1120746.CCNL01000004_gene59 2.76e-179 506.0 COG0533@1|root,COG0533@2|Bacteria,2NNXP@2323|unclassified Bacteria 2|Bacteria O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 ko:K01409,ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 R10648 RC00070,RC00416 ko00000,ko00001,ko00002,ko01000,ko02044,ko03016 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - Peptidase_M22 HNDODLHM_00235 1235835.C814_00269 3.78e-40 139.0 COG0454@1|root,COG0456@2|Bacteria,1V6KU@1239|Firmicutes,24J9Z@186801|Clostridia,3WKHF@541000|Ruminococcaceae 186801|Clostridia K This enzyme acetylates the N-terminal alanine of ribosomal protein S18 rimI - 2.3.1.128 ko:K03789 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_1,Acetyltransf_10 HNDODLHM_00236 663278.Ethha_2634 1.22e-26 104.0 COG0394@1|root,COG0394@2|Bacteria,1V6SG@1239|Firmicutes,24MMZ@186801|Clostridia,3WSE6@541000|Ruminococcaceae 186801|Clostridia T Low molecular weight phosphatase family - - 3.1.3.48,5.3.1.6 ko:K01104,ko:K01808 ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01056,R09030 RC00376,RC00434 ko00000,ko00001,ko00002,ko01000 - - - LMWPc,LacAB_rpiB HNDODLHM_00237 428125.CLOLEP_03726 0.0 984.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1TPKJ@1239|Firmicutes,248NG@186801|Clostridia,3WGRT@541000|Ruminococcaceae 186801|Clostridia L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 HNDODLHM_00238 1121334.KB911067_gene215 1.65e-138 407.0 COG0787@1|root,COG0787@2|Bacteria,1TNYY@1239|Firmicutes,2480T@186801|Clostridia,3WGQU@541000|Ruminococcaceae 186801|Clostridia M Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids alr - 5.1.1.1,5.1.1.18 ko:K01775,ko:K18348 ko00473,ko01100,ko01502,ko02020,map00473,map01100,map01502,map02020 M00652 R00401 RC00285 ko00000,ko00001,ko00002,ko01000,ko01011,ko01504 - - - Acyl_transf_3,Ala_racemase_C,Ala_racemase_N HNDODLHM_00239 1120746.CCNL01000013_gene1971 4.93e-83 265.0 COG1323@1|root,COG1323@2|Bacteria 2|Bacteria S HIGH Nucleotidyl Transferase ylbM - - - - - - - - - - - HIGH_NTase1 HNDODLHM_00240 428125.CLOLEP_03328 8.13e-186 528.0 COG0282@1|root,COG0282@2|Bacteria,1TQ22@1239|Firmicutes,248ZM@186801|Clostridia,3WH48@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction ackA - 2.7.2.1 ko:K00925 ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200 M00357,M00579 R00315,R01353 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - Acetate_kinase HNDODLHM_00241 428125.CLOLEP_03325 4.46e-28 102.0 COG2155@1|root,COG2155@2|Bacteria,1VEQJ@1239|Firmicutes,24QKW@186801|Clostridia,3WKT4@541000|Ruminococcaceae 186801|Clostridia S Domain of unknown function (DUF378) - - - ko:K09779 - - - - ko00000 - - - DUF378 HNDODLHM_00242 411473.RUMCAL_00215 1.74e-50 177.0 COG3451@1|root,COG3451@2|Bacteria,1TS2J@1239|Firmicutes,25EI6@186801|Clostridia,3WH1D@541000|Ruminococcaceae 186801|Clostridia U Type IV secretory pathway, VirB4 components - - - - - - - - - - - - AAA_10,DUF87 HNDODLHM_00243 411459.RUMOBE_02253 2.98e-41 149.0 COG4509@1|root,COG4509@2|Bacteria,1V7UG@1239|Firmicutes,24KBR@186801|Clostridia,3Y2BT@572511|Blautia 186801|Clostridia S Sortase family - - - - - - - - - - - - Sortase HNDODLHM_00244 411473.RUMCAL_00216 5.89e-64 202.0 28HKG@1|root,2Z7VB@2|Bacteria,1TZFI@1239|Firmicutes,24BXG@186801|Clostridia,3WJN9@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00245 411473.RUMCAL_00218 2.52e-118 349.0 28I46@1|root,2Z87R@2|Bacteria,1TQ13@1239|Firmicutes,249S3@186801|Clostridia,3WGFY@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_00246 411473.RUMCAL_00224 3.02e-40 136.0 2B05D@1|root,31SFX@2|Bacteria,1V79U@1239|Firmicutes,24KBJ@186801|Clostridia,3WK1Y@541000|Ruminococcaceae 186801|Clostridia S Protein of unknown function (DUF3852) - - - - - - - - - - - - DUF3852 HNDODLHM_00247 411490.ANACAC_00754 2.34e-20 87.4 2CGYE@1|root,31NJV@2|Bacteria,1V7Z1@1239|Firmicutes,24GBB@186801|Clostridia 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - DUF4406 HNDODLHM_00248 411468.CLOSCI_03277 0.0 1219.0 COG4932@1|root,COG4932@2|Bacteria,1TRG6@1239|Firmicutes,2492K@186801|Clostridia 186801|Clostridia M Psort location Cellwall, score - - - - - - - - - - - - CarboxypepD_reg HNDODLHM_00249 397288.C806_04305 1.24e-64 204.0 COG2105@1|root,COG2105@2|Bacteria,1UY8U@1239|Firmicutes,24BB2@186801|Clostridia,27THB@186928|unclassified Lachnospiraceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00250 397288.C806_04305 1.87e-07 51.2 COG2105@1|root,COG2105@2|Bacteria,1UY8U@1239|Firmicutes,24BB2@186801|Clostridia,27THB@186928|unclassified Lachnospiraceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00252 1121334.KB911074_gene2538 3.9e-30 110.0 COG3906@1|root,COG3906@2|Bacteria,1VF5Z@1239|Firmicutes,24V04@186801|Clostridia 186801|Clostridia S Belongs to the UPF0473 family - - - - - - - - - - - - DUF1292 HNDODLHM_00253 357809.Cphy_3205 2.16e-130 381.0 COG0240@1|root,COG0240@2|Bacteria,1TQ5P@1239|Firmicutes,248JT@186801|Clostridia,21Z7T@1506553|Lachnoclostridium 186801|Clostridia I Glycerol-3-phosphate dehydrogenase gpsA - 1.1.1.94 ko:K00057 ko00564,ko01110,map00564,map01110 - R00842,R00844 RC00029 ko00000,ko00001,ko01000 - - - NAD_Gly3P_dh_C,NAD_Gly3P_dh_N HNDODLHM_00254 411470.RUMGNA_03522 9.91e-46 176.0 2DM53@1|root,31R8Y@2|Bacteria,1UK4X@1239|Firmicutes,25FPC@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - PMT_2 HNDODLHM_00255 478749.BRYFOR_08717 2.87e-56 189.0 COG1307@1|root,COG1307@2|Bacteria,1TRM7@1239|Firmicutes,247ST@186801|Clostridia 186801|Clostridia T EDD domain protein, DegV family - - - - - - - - - - - - DegV HNDODLHM_00256 877415.JNJQ01000035_gene1183 2.25e-42 160.0 28NW3@1|root,2ZBU0@2|Bacteria,1V2IM@1239|Firmicutes,3VTU3@526524|Erysipelotrichia 526524|Erysipelotrichia S Uncharacterised nucleotidyltransferase - - - - - - - - - - - - NTP_transf_5 HNDODLHM_00257 665950.HMPREF1025_02156 1.08e-23 97.4 COG0681@1|root,COG0681@2|Bacteria,1VFKY@1239|Firmicutes,24RQG@186801|Clostridia,27SM3@186928|unclassified Lachnospiraceae 186801|Clostridia U Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - Peptidase_S24 HNDODLHM_00258 485916.Dtox_2892 1.12e-25 97.8 2E5V7@1|root,330JA@2|Bacteria,1VFNT@1239|Firmicutes,24RD2@186801|Clostridia,2667Z@186807|Peptococcaceae 186801|Clostridia S Coenzyme PQQ synthesis protein D (PqqD) - - - - - - - - - - - - PqqD HNDODLHM_00259 1121334.KB911066_gene912 1.18e-298 825.0 COG0459@1|root,COG0459@2|Bacteria,1TP1T@1239|Firmicutes,248BG@186801|Clostridia,3WGUG@541000|Ruminococcaceae 186801|Clostridia O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groL GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 HNDODLHM_00260 1105031.HMPREF1141_2106 5.68e-45 147.0 COG0234@1|root,COG0234@2|Bacteria,1V9ZM@1239|Firmicutes,24MMM@186801|Clostridia,36KFP@31979|Clostridiaceae 186801|Clostridia O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter groS - - ko:K04078 - - - - ko00000,ko03029,ko03110 - - - Cpn10 HNDODLHM_00261 1120746.CCNL01000014_gene2042 3.31e-105 333.0 COG0515@1|root,COG2815@1|root,COG0515@2|Bacteria,COG2815@2|Bacteria 2|Bacteria G serine threonine protein kinase - - 2.7.11.1 ko:K08884,ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,TIR_2 HNDODLHM_00263 1291050.JAGE01000002_gene3742 4.47e-23 99.4 COG1564@1|root,COG1564@2|Bacteria,1VA0W@1239|Firmicutes,24NG6@186801|Clostridia,3WJUT@541000|Ruminococcaceae 186801|Clostridia H thiamine pyrophosphokinase thiN - 2.7.6.2 ko:K00949 ko00730,ko01100,map00730,map01100 - R00619 RC00002,RC00017 ko00000,ko00001,ko01000 - - - TPK_B1_binding,TPK_catalytic HNDODLHM_00264 428125.CLOLEP_02345 2.09e-109 326.0 COG1162@1|root,COG1162@2|Bacteria,1TPSQ@1239|Firmicutes,248R5@186801|Clostridia,3WGGY@541000|Ruminococcaceae 186801|Clostridia S One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit rsgA - 3.1.3.100 ko:K06949 ko00730,ko01100,map00730,map01100 - R00615,R02135 RC00002,RC00017 ko00000,ko00001,ko01000,ko03009 - - - RsgA_GTPase,RsgA_N HNDODLHM_00265 1105031.HMPREF1141_3005 3.81e-221 640.0 COG0515@1|root,COG0515@2|Bacteria,1TP3F@1239|Firmicutes,2492G@186801|Clostridia,36DBS@31979|Clostridiaceae 186801|Clostridia KLT serine threonine protein kinase prkC - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - PASTA,Pkinase HNDODLHM_00266 1120746.CCNL01000011_gene1708 1.32e-76 238.0 COG0631@1|root,COG0631@2|Bacteria,2NR1Q@2323|unclassified Bacteria 2|Bacteria T Serine/threonine phosphatases, family 2C, catalytic domain stp - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C,PP2C_2 HNDODLHM_00267 1105031.HMPREF1141_3003 2.05e-156 449.0 COG0820@1|root,COG0820@2|Bacteria,1TPVF@1239|Firmicutes,248BC@186801|Clostridia,36E1B@31979|Clostridiaceae 186801|Clostridia J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN - 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Fer4_14,Radical_SAM HNDODLHM_00268 428125.CLOLEP_02341 5.25e-140 415.0 COG0144@1|root,COG0781@1|root,COG0144@2|Bacteria,COG0781@2|Bacteria,1TP3N@1239|Firmicutes,248CS@186801|Clostridia,3WGKM@541000|Ruminococcaceae 186801|Clostridia J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA sun - 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,Methyltr_RsmF_N,NusB HNDODLHM_00269 1120746.CCNL01000011_gene1705 4.06e-79 244.0 COG2738@1|root,COG2738@2|Bacteria,2NPB1@2323|unclassified Bacteria 2|Bacteria S Putative neutral zinc metallopeptidase yugP - - ko:K06973 - - - - ko00000 - - - Zn_peptidase_2 HNDODLHM_00270 1384065.JAGS01000001_gene798 1.05e-112 335.0 COG0223@1|root,COG0223@2|Bacteria,1TQ32@1239|Firmicutes,248ED@186801|Clostridia,3WGPQ@541000|Ruminococcaceae 186801|Clostridia J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus fmt - 2.1.2.9 ko:K00604 ko00670,ko00970,map00670,map00970 - R03940 RC00026,RC00165 ko00000,ko00001,ko01000 - - - Formyl_trans_C,Formyl_trans_N HNDODLHM_00271 428125.CLOLEP_02338 1.2e-63 199.0 COG0242@1|root,COG0242@2|Bacteria,1V70B@1239|Firmicutes,24JET@186801|Clostridia,3WJGJ@541000|Ruminococcaceae 186801|Clostridia J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions def - 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase HNDODLHM_00272 428125.CLOLEP_02337 0.0 913.0 COG1198@1|root,COG1198@2|Bacteria,1TNYB@1239|Firmicutes,248EI@186801|Clostridia,3WGTG@541000|Ruminococcaceae 186801|Clostridia L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA priA - - ko:K04066 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,ResIII HNDODLHM_00274 537013.CLOSTMETH_02652 3.95e-61 196.0 COG0194@1|root,COG0194@2|Bacteria,1TP0M@1239|Firmicutes,24HEX@186801|Clostridia,3WIUW@541000|Ruminococcaceae 186801|Clostridia F Essential for recycling GMP and indirectly, cGMP gmk - 2.7.4.8 ko:K00942 ko00230,ko01100,map00230,map01100 M00050 R00332,R02090 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_kin HNDODLHM_00275 1507.HMPREF0262_02222 3.2e-27 101.0 COG2052@1|root,COG2052@2|Bacteria,1VA40@1239|Firmicutes,24MXV@186801|Clostridia,36JMX@31979|Clostridiaceae 186801|Clostridia S Belongs to the UPF0296 family NPD7_560 - - ko:K09777 - - - - ko00000 - - - DUF370 HNDODLHM_00276 1120746.CCNL01000011_gene1698 1.38e-119 351.0 COG1561@1|root,COG1561@2|Bacteria,2NPG5@2323|unclassified Bacteria 2|Bacteria S Domain of unknown function (DUF1732) yicC GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009022,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901575 - ko:K03316 - - - - ko00000 2.A.36 - - DUF1732,YicC_N HNDODLHM_00277 428125.CLOLEP_02910 4.28e-129 372.0 COG0217@1|root,COG0217@2|Bacteria,1TPP5@1239|Firmicutes,247NK@186801|Clostridia,3WHDN@541000|Ruminococcaceae 186801|Clostridia K Transcriptional regulatory protein yebC - - - - - - - - - - - Transcrip_reg HNDODLHM_00279 1120746.CCNL01000011_gene1583 2.92e-276 778.0 COG0539@1|root,COG0761@1|root,COG0539@2|Bacteria,COG0761@2|Bacteria,2NNTP@2323|unclassified Bacteria 2|Bacteria J Ribosomal protein S1 ispH GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0042380,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046490,GO:0048037,GO:0051536,GO:0051538,GO:0051540,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.4,2.7.4.25 ko:K00945,ko:K02945,ko:K03527 ko00240,ko00900,ko01100,ko01110,ko01130,ko03010,map00240,map00900,map01100,map01110,map01130,map03010 M00052,M00096,M00178 R00158,R00512,R01665,R05884,R08210 RC00002,RC01137,RC01487 br01610,ko00000,ko00001,ko00002,ko01000,ko03011 - - iECIAI1_1343.ECIAI1_0030,iECW_1372.ECW_m0028,iEKO11_1354.EKO11_3884,iEcHS_1320.EcHS_A0031,iEcolC_1368.EcolC_3626,iIT341.HP0400,iLJ478.TM1444,iPC815.YPO0477,iSFV_1184.SFV_0023,iSF_1195.SF0026,iSFxv_1172.SFxv_0027,iS_1188.S0028,iWFL_1372.ECW_m0028,iYL1228.KPN_00024 LYTB,S1 HNDODLHM_00280 428125.CLOLEP_03183 3.64e-44 153.0 COG0204@1|root,COG0204@2|Bacteria,1UMJA@1239|Firmicutes,249AV@186801|Clostridia,3WS6N@541000|Ruminococcaceae 186801|Clostridia I Phosphate acyltransferases plsC_1 - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase HNDODLHM_00281 1120746.CCNL01000011_gene1580 3.23e-82 251.0 COG0283@1|root,COG0283@2|Bacteria,2NPCE@2323|unclassified Bacteria 2|Bacteria F Belongs to the cytidylate kinase family. Type 1 subfamily cmk GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.19,2.7.4.25,6.3.2.1 ko:K00800,ko:K00945,ko:K03977,ko:K13799 ko00240,ko00400,ko00410,ko00770,ko01100,ko01110,ko01130,ko01230,map00240,map00400,map00410,map00770,map01100,map01110,map01130,map01230 M00022,M00052,M00119 R00158,R00512,R01665,R02473,R03460 RC00002,RC00096,RC00141,RC00350 ko00000,ko00001,ko00002,ko01000,ko03009 - - - Cytidylate_kin,Pantoate_ligase HNDODLHM_00282 1120746.CCNL01000011_gene1579 3.11e-173 497.0 COG2081@1|root,COG2081@2|Bacteria,2NPCB@2323|unclassified Bacteria 2|Bacteria S HI0933-like protein - - - ko:K07007 - - - - ko00000 - - - HI0933_like HNDODLHM_00283 428125.CLOLEP_03186 3.16e-127 370.0 COG1737@1|root,COG1737@2|Bacteria,1TP7H@1239|Firmicutes,248ZD@186801|Clostridia,3WGRZ@541000|Ruminococcaceae 186801|Clostridia K transcriptional regulator RpiR family - - - - - - - - - - - - HTH_6,SIS HNDODLHM_00284 428125.CLOLEP_03235 1.35e-95 284.0 COG0118@1|root,COG0118@2|Bacteria,1TQT0@1239|Firmicutes,248SH@186801|Clostridia,3WGIA@541000|Ruminococcaceae 186801|Clostridia E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR hisH - - ko:K02501 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - GATase HNDODLHM_00285 428125.CLOLEP_03234 6.81e-131 377.0 COG0107@1|root,COG0107@2|Bacteria,1TP0W@1239|Firmicutes,24900@186801|Clostridia,3WGQE@541000|Ruminococcaceae 186801|Clostridia E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit hisF - - ko:K02500 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth HNDODLHM_00286 1216932.CM240_0788 2.29e-107 367.0 COG0366@1|root,COG0860@1|root,COG3664@1|root,COG0366@2|Bacteria,COG0860@2|Bacteria,COG3664@2|Bacteria,1TQSE@1239|Firmicutes,24C4V@186801|Clostridia,36GZS@31979|Clostridiaceae 186801|Clostridia G Belongs to the glycosyl hydrolase 13 family - - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,Big_2,CBM26,CBM53,CW_binding_1,Y_Y_Y HNDODLHM_00290 511680.BUTYVIB_01595 1.79e-191 560.0 COG0366@1|root,COG0366@2|Bacteria,1TQSE@1239|Firmicutes,24C4V@186801|Clostridia,4BWVW@830|Butyrivibrio 186801|Clostridia G Starch-binding module 26 - - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,Big_2,CBM26,CW_binding_1,Y_Y_Y HNDODLHM_00291 1121115.AXVN01000064_gene4030 1.01e-126 371.0 COG1674@1|root,COG1674@2|Bacteria,1TPHE@1239|Firmicutes,249WR@186801|Clostridia,3XYNB@572511|Blautia 186801|Clostridia D COG COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins - - - - - - - - - - - - FtsK_SpoIIIE HNDODLHM_00292 411470.RUMGNA_02418 2.69e-91 266.0 2EYWB@1|root,33S39@2|Bacteria,1VS3G@1239|Firmicutes 1239|Firmicutes - - - - - - - - - - - - - - - HNDODLHM_00293 411459.RUMOBE_02873 1.03e-281 770.0 COG2946@1|root,COG2946@2|Bacteria,1UHNT@1239|Firmicutes,24ZUP@186801|Clostridia,3XZ7X@572511|Blautia 186801|Clostridia L Psort location Cytoplasmic, score 8.87 - - - ko:K07467 - - - - ko00000 - - - HTH_3,HTH_31,Rep_trans HNDODLHM_00294 1235790.C805_01420 2.36e-22 86.3 2E3NJ@1|root,32YKN@2|Bacteria,1VIHR@1239|Firmicutes,24SDK@186801|Clostridia,25Z8P@186806|Eubacteriaceae 186801|Clostridia S Protein of unknown function (DUF3789) - - - - - - - - - - - - DUF3789 HNDODLHM_00295 431943.CKL_3860 1.16e-26 100.0 COG1846@1|root,COG1846@2|Bacteria,1VAGH@1239|Firmicutes,24N7S@186801|Clostridia,36KHE@31979|Clostridiaceae 186801|Clostridia K Helix-turn-helix domain - - - - - - - - - - - - HTH_36 HNDODLHM_00296 394503.Ccel_2738 8.78e-269 756.0 COG3505@1|root,COG3505@2|Bacteria,1TPCF@1239|Firmicutes,2489C@186801|Clostridia,36EMJ@31979|Clostridiaceae 186801|Clostridia U TraG TraD family - - - ko:K03205 ko03070,map03070 M00333 - - ko00000,ko00001,ko00002,ko02044 3.A.7 - - T4SS-DNA_transf HNDODLHM_00297 1321778.HMPREF1982_04196 7.27e-84 262.0 COG0358@1|root,COG0358@2|Bacteria,1TQKP@1239|Firmicutes,247WJ@186801|Clostridia,268I2@186813|unclassified Clostridiales 186801|Clostridia L Protein of unknown function (DUF3991) - - - - - - - - - - - - DUF3991,Toprim_2 HNDODLHM_00298 1384065.JAGS01000001_gene1173 1.8e-37 127.0 2E4DC@1|root,32Z8R@2|Bacteria,1VF6A@1239|Firmicutes,24QX7@186801|Clostridia,3WMKN@541000|Ruminococcaceae 186801|Clostridia S Antitoxin component of a toxin-antitoxin (TA) module - - - ko:K19165 - - - - ko00000,ko02048 - - - PhdYeFM_antitox HNDODLHM_00299 1410628.JNKS01000004_gene2041 6.73e-56 177.0 COG3654@1|root,COG3654@2|Bacteria,1V6EG@1239|Firmicutes,24J85@186801|Clostridia,27NM5@186928|unclassified Lachnospiraceae 186801|Clostridia S TIGRFAM death-on-curing family protein - - - ko:K07341 - - - - ko00000,ko02048 - - - Fic HNDODLHM_00300 1410631.JHWZ01000005_gene98 6.57e-79 239.0 COG0491@1|root,COG0491@2|Bacteria,1V1TR@1239|Firmicutes,24GKR@186801|Clostridia,27J2D@186928|unclassified Lachnospiraceae 186801|Clostridia S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B HNDODLHM_00301 1089553.Tph_c07580 8.68e-136 410.0 COG0790@1|root,COG0790@2|Bacteria,1VC44@1239|Firmicutes,258E9@186801|Clostridia,42HQ0@68295|Thermoanaerobacterales 186801|Clostridia S COG0790 FOG TPR repeat, SEL1 subfamily - - - ko:K07126 - - - - ko00000 - - - - HNDODLHM_00304 1121933.AUHH01000015_gene444 9.1e-43 151.0 COG3591@1|root,COG3591@2|Bacteria,2IKVG@201174|Actinobacteria 201174|Actinobacteria E Belongs to the peptidase S1B family - - 3.4.21.19 ko:K01318 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002 - - - Trypsin,Trypsin_2 HNDODLHM_00305 138119.DSY2434 4.89e-39 150.0 COG0642@1|root,COG2205@2|Bacteria,1VBSG@1239|Firmicutes,24KQZ@186801|Clostridia,263WU@186807|Peptococcaceae 186801|Clostridia T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA HNDODLHM_00307 1282887.AUJG01000001_gene1541 9.93e-94 277.0 COG3760@1|root,COG3760@2|Bacteria,1V1JF@1239|Firmicutes,24FVD@186801|Clostridia 186801|Clostridia J YbaK proline--tRNA ligase associated domain protein - - - ko:K19055 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit HNDODLHM_00308 1120746.CCNL01000017_gene2947 5.5e-20 103.0 COG1277@1|root,COG1277@2|Bacteria 2|Bacteria - - - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - - HNDODLHM_00309 1120746.CCNL01000017_gene2946 2.64e-106 318.0 COG1131@1|root,COG1131@2|Bacteria,2NR7A@2323|unclassified Bacteria 2|Bacteria V ATPases associated with a variety of cellular activities ytrB - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00310 411463.EUBVEN_02375 4.17e-38 132.0 COG1725@1|root,COG1725@2|Bacteria,1VFD0@1239|Firmicutes,24MTU@186801|Clostridia,25X79@186806|Eubacteriaceae 186801|Clostridia K helix_turn_helix gluconate operon transcriptional repressor - - - ko:K07979 - - - - ko00000,ko03000 - - - GntR HNDODLHM_00311 1105031.HMPREF1141_0185 6.97e-142 405.0 COG1191@1|root,COG1191@2|Bacteria,1TPDD@1239|Firmicutes,24A1H@186801|Clostridia,36E0E@31979|Clostridiaceae 186801|Clostridia K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released sigG - - ko:K03091 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r3,Sigma70_r4 HNDODLHM_00312 537013.CLOSTMETH_03906 1.19e-33 119.0 COG4496@1|root,COG4496@2|Bacteria,1VA04@1239|Firmicutes,24MX9@186801|Clostridia,3WKB9@541000|Ruminococcaceae 186801|Clostridia S protein, YerC YecD - - - - - - - - - - - - Trp_repressor HNDODLHM_00313 428125.CLOLEP_02384 5.68e-91 276.0 COG0500@1|root,COG2226@2|Bacteria,1TQUF@1239|Firmicutes,25E3F@186801|Clostridia,3WIFZ@541000|Ruminococcaceae 186801|Clostridia Q Methyltransferase domain protein - - - - - - - - - - - - Methyltransf_25 HNDODLHM_00314 1105031.HMPREF1141_3071 9.56e-116 342.0 COG1281@1|root,COG1281@2|Bacteria,1TRCH@1239|Firmicutes,24940@186801|Clostridia,36DPJ@31979|Clostridiaceae 186801|Clostridia O Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress hslO - - ko:K04083 - - - - ko00000,ko03110 - - - HSP33 HNDODLHM_00316 428125.CLOLEP_03413 3.28e-59 210.0 COG4932@1|root,COG4932@2|Bacteria,1TRG6@1239|Firmicutes,2492K@186801|Clostridia,3WHHA@541000|Ruminococcaceae 1239|Firmicutes M domain protein - - - - - - - - - - - - - HNDODLHM_00320 469596.HMPREF9488_02220 1.3e-95 329.0 COG0553@1|root,COG0827@1|root,COG4646@1|root,COG0553@2|Bacteria,COG0827@2|Bacteria,COG4646@2|Bacteria,1TPQA@1239|Firmicutes,3VNX4@526524|Erysipelotrichia 526524|Erysipelotrichia L Helicase C-terminal domain protein - - - - - - - - - - - - Helicase_C,SNF2_N HNDODLHM_00321 469596.HMPREF9488_02220 0.0 2287.0 COG0553@1|root,COG0827@1|root,COG4646@1|root,COG0553@2|Bacteria,COG0827@2|Bacteria,COG4646@2|Bacteria,1TPQA@1239|Firmicutes,3VNX4@526524|Erysipelotrichia 526524|Erysipelotrichia L Helicase C-terminal domain protein - - - - - - - - - - - - Helicase_C,SNF2_N HNDODLHM_00322 642492.Clole_2357 1.24e-235 664.0 COG3666@1|root,COG3666@2|Bacteria,1TQQ9@1239|Firmicutes,24AG9@186801|Clostridia 186801|Clostridia L Transposase - - - - - - - - - - - - DDE_Tnp_1,DDE_Tnp_1_6,DUF772 HNDODLHM_00323 1160721.RBI_II00243 2.63e-56 181.0 COG0726@1|root,COG0726@2|Bacteria,1TT1X@1239|Firmicutes,249PF@186801|Clostridia,3WI2P@541000|Ruminococcaceae 186801|Clostridia G Delta-lactam-biosynthetic de-N-acetylase pdaA - - ko:K01567 - - - - ko00000,ko01000 - - - Polysacc_deac_1 HNDODLHM_00324 999413.HMPREF1094_00600 1.56e-73 263.0 COG4932@1|root,COG4932@2|Bacteria,1TRG6@1239|Firmicutes,3VPYG@526524|Erysipelotrichia 526524|Erysipelotrichia M Psort location Cellwall, score - - - - - - - - - - - - CarboxypepD_reg HNDODLHM_00327 877414.ATWA01000039_gene1444 3.45e-18 79.0 2EQ85@1|root,33HUE@2|Bacteria,1VMVK@1239|Firmicutes 1239|Firmicutes - - - - - - - - - - - - - - - HNDODLHM_00330 742738.HMPREF9460_02067 1.47e-84 254.0 2ECXH@1|root,336UQ@2|Bacteria,1VT65@1239|Firmicutes,24EJJ@186801|Clostridia,26AUE@186813|unclassified Clostridiales 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00331 1321372.AQQB01000003_gene1493 0.0 2377.0 COG0553@1|root,COG0827@1|root,COG4646@1|root,COG0553@2|Bacteria,COG0827@2|Bacteria,COG4646@2|Bacteria,1TPQA@1239|Firmicutes,4HDHN@91061|Bacilli,1WSVK@1307|Streptococcus suis 91061|Bacilli L SNF2 family N-terminal domain XK27_00500 - - - - - - - - - - - Helicase_C,N6_Mtase,ResIII,SNF2_N HNDODLHM_00332 1410624.JNKK01000002_gene895 4.37e-58 200.0 COG0463@1|root,COG0463@2|Bacteria,1TQ8C@1239|Firmicutes,248MK@186801|Clostridia,27KKC@186928|unclassified Lachnospiraceae 186801|Clostridia M GtrA-like protein - - - - - - - - - - - - Glycos_transf_2,GtrA HNDODLHM_00333 428125.CLOLEP_02660 2.92e-87 270.0 COG1284@1|root,COG1284@2|Bacteria,1TRAU@1239|Firmicutes,249DE@186801|Clostridia,3WSC6@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF2179,YitT_membrane HNDODLHM_00334 428125.CLOLEP_02659 3e-39 135.0 COG1939@1|root,COG1939@2|Bacteria,1VA5V@1239|Firmicutes,24MR1@186801|Clostridia,3WJN8@541000|Ruminococcaceae 186801|Clostridia J Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc) mrnC - - ko:K11145 - - - - ko00000,ko01000,ko03009 - - - Ribonuclease_3 HNDODLHM_00335 428125.CLOLEP_02657 2.54e-233 650.0 COG0536@1|root,COG0536@2|Bacteria,1TPX7@1239|Firmicutes,247SP@186801|Clostridia,3WH1H@541000|Ruminococcaceae 186801|Clostridia S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control obg - - ko:K03979 - - - - ko00000,ko01000,ko03009 - - - DUF1967,GTP1_OBG,MMR_HSR1 HNDODLHM_00336 428125.CLOLEP_02656 1.98e-54 171.0 COG0211@1|root,COG0211@2|Bacteria,1V6HW@1239|Firmicutes,24N3D@186801|Clostridia,3WJU0@541000|Ruminococcaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bL27 family rpmA - - ko:K02899 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27 HNDODLHM_00337 1120746.CCNL01000011_gene1604 3.32e-28 105.0 COG2868@1|root,COG2868@2|Bacteria 2|Bacteria J Cysteine protease Prp ysxB - - ko:K07584 - - - - ko00000 - - - Peptidase_Prp HNDODLHM_00338 1410670.JHXF01000003_gene1505 3.45e-43 143.0 COG0261@1|root,COG0261@2|Bacteria,1V9YH@1239|Firmicutes,24MRS@186801|Clostridia,3WJUU@541000|Ruminococcaceae 186801|Clostridia J This protein binds to 23S rRNA in the presence of protein L20 rplU - - ko:K02888 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L21p HNDODLHM_00339 428125.CLOLEP_02649 2.57e-144 413.0 COG0190@1|root,COG0190@2|Bacteria,1TP1P@1239|Firmicutes,248DB@186801|Clostridia,3WGHP@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate folD - 1.5.1.5,3.5.4.9 ko:K01491 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R01220,R01655 RC00202,RC00578 ko00000,ko00001,ko00002,ko01000 - - - THF_DHG_CYH,THF_DHG_CYH_C HNDODLHM_00340 1105031.HMPREF1141_3028 2.29e-170 491.0 COG0612@1|root,COG0612@2|Bacteria,1TP5I@1239|Firmicutes,248HT@186801|Clostridia,36DH6@31979|Clostridiaceae 186801|Clostridia S Belongs to the peptidase M16 family ymfH - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C HNDODLHM_00341 428125.CLOLEP_02646 1.24e-121 367.0 COG0612@1|root,COG0612@2|Bacteria,1TPN6@1239|Firmicutes,248J8@186801|Clostridia,3WHRP@541000|Ruminococcaceae 186801|Clostridia S Peptidase M16 inactive domain protein - - - - - - - - - - - - Peptidase_M16_C HNDODLHM_00342 511680.BUTYVIB_00897 1.99e-104 330.0 COG3209@1|root,COG3291@1|root,COG3209@2|Bacteria,COG3291@2|Bacteria 2|Bacteria S metallopeptidase activity - - - - - - - - - - - - Big_5,CBM_6,Flg_new,LRR_5,PKD,SLH HNDODLHM_00343 1280698.AUJS01000003_gene2655 7.81e-42 137.0 2CCB2@1|root,32S7G@2|Bacteria,1VABI@1239|Firmicutes,24MZT@186801|Clostridia,27X06@189330|Dorea 186801|Clostridia L Excisionase from transposon Tn916 - - - - - - - - - - - - Tn916-Xis HNDODLHM_00344 742765.HMPREF9457_03493 3.82e-51 161.0 2CI4F@1|root,32S7A@2|Bacteria,1VCX6@1239|Firmicutes,2524Q@186801|Clostridia 186801|Clostridia S Helix-turn-helix domain - - - - - - - - - - - - HTH_16 HNDODLHM_00345 1256908.HMPREF0373_03077 1.6e-98 286.0 COG1595@1|root,COG1595@2|Bacteria,1U97R@1239|Firmicutes 1239|Firmicutes K DNA-templated transcription, initiation - - - - - - - - - - - - - HNDODLHM_00346 742765.HMPREF9457_03491 1.24e-145 410.0 COG1136@1|root,COG1136@2|Bacteria,1TP5M@1239|Firmicutes,24BH7@186801|Clostridia,27W5Z@189330|Dorea 186801|Clostridia V ATPases associated with a variety of cellular activities - - - - - - - - - - - - ABC_tran HNDODLHM_00347 658659.HMPREF0983_03967 0.0 878.0 COG0577@1|root,COG0577@2|Bacteria,1TPSE@1239|Firmicutes 1239|Firmicutes V Efflux ABC transporter permease protein - - - - - - - - - - - - FtsX,MacB_PCD HNDODLHM_00348 658659.HMPREF0983_03968 5.09e-266 731.0 COG0577@1|root,COG0577@2|Bacteria,1TR7X@1239|Firmicutes 1239|Firmicutes V Efflux ABC transporter, permease protein - - - - - - - - - - - - FtsX HNDODLHM_00349 658659.HMPREF0983_03969 1.53e-112 323.0 28IHS@1|root,2Z8IZ@2|Bacteria,1TSJ7@1239|Firmicutes 1239|Firmicutes - - - - - - - - - - - - - - - HNDODLHM_00350 658659.HMPREF0983_03970 9.72e-156 437.0 COG0745@1|root,COG0745@2|Bacteria,1TPU2@1239|Firmicutes,3VQSQ@526524|Erysipelotrichia 526524|Erysipelotrichia T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_00351 1256908.HMPREF0373_03071 7.66e-291 796.0 COG5002@1|root,COG5002@2|Bacteria,1URKI@1239|Firmicutes,248WK@186801|Clostridia,25ZEV@186806|Eubacteriaceae 186801|Clostridia T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA HNDODLHM_00352 272563.CD630_03690 1.78e-26 99.8 COG0582@1|root,COG0582@2|Bacteria,1VBGF@1239|Firmicutes,24NRM@186801|Clostridia,25U1Z@186804|Peptostreptococcaceae 186801|Clostridia L viral genome integration into host DNA - - - - - - - - - - - - - HNDODLHM_00353 411467.BACCAP_03491 0.0 1016.0 COG0480@1|root,COG3688@1|root,COG0480@2|Bacteria,COG3688@2|Bacteria,1TPQH@1239|Firmicutes,247X4@186801|Clostridia,26843@186813|unclassified Clostridiales 186801|Clostridia J Elongation factor G, domain IV tetP - - - - - - - - - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,NYN_YacP HNDODLHM_00354 1235793.C809_01817 8.22e-68 209.0 COG0454@1|root,COG0456@2|Bacteria,1V77V@1239|Firmicutes,24MDJ@186801|Clostridia,27MDF@186928|unclassified Lachnospiraceae 186801|Clostridia K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 HNDODLHM_00355 1408323.JQKK01000002_gene1839 4.7e-137 392.0 COG1476@1|root,COG1476@2|Bacteria,1UUSK@1239|Firmicutes,247YW@186801|Clostridia,27KQ6@186928|unclassified Lachnospiraceae 186801|Clostridia K Putative zinc ribbon domain - - - - - - - - - - - - HTH_3,Zn_ribbon_2 HNDODLHM_00356 428125.CLOLEP_02456 2.47e-52 170.0 2ANER@1|root,31DDD@2|Bacteria,1V46U@1239|Firmicutes,24JDI@186801|Clostridia,3WJNA@541000|Ruminococcaceae 186801|Clostridia S stage V sporulation protein AC spoVAC - - ko:K06405 - - - - ko00000 - - - SpoVAC_SpoVAEB HNDODLHM_00357 1120746.CCNL01000004_gene82 2.67e-135 398.0 COG1104@1|root,COG1104@2|Bacteria 2|Bacteria E Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins - - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 HNDODLHM_00358 428125.CLOLEP_01204 7.66e-175 499.0 COG0301@1|root,COG0301@2|Bacteria,1TPNW@1239|Firmicutes,247Y5@186801|Clostridia,3WGMK@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS thiI - 2.8.1.4 ko:K03151 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07461 - ko00000,ko00001,ko01000,ko03016 - - - THUMP,ThiI HNDODLHM_00359 1120746.CCNL01000004_gene85 5.32e-70 238.0 COG4509@1|root,COG4509@2|Bacteria 2|Bacteria S Sortase family srtB - 3.4.22.70 ko:K08600 - - - - ko00000,ko01000,ko01002,ko01011 - - - CinA,MoCF_biosynth,Sortase,SpoIID HNDODLHM_00361 411473.RUMCAL_01858 2.97e-253 698.0 COG0626@1|root,COG0626@2|Bacteria,1TPC7@1239|Firmicutes,25E6I@186801|Clostridia,3WIMR@541000|Ruminococcaceae 186801|Clostridia E Cys Met metabolism megL - 2.5.1.48,4.4.1.11 ko:K01739,ko:K01761 ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230 M00017 R00654,R00999,R01288,R02508,R03217,R03260,R04770,R04944,R04945,R04946 RC00020,RC00056,RC00069,RC00196,RC00348,RC00420,RC01209,RC01210,RC02848,RC02866 ko00000,ko00001,ko00002,ko01000 - - - Cys_Met_Meta_PP HNDODLHM_00363 1408436.JHXY01000049_gene257 2.94e-114 330.0 COG2184@1|root,COG2184@2|Bacteria,1TPUZ@1239|Firmicutes,248XF@186801|Clostridia,25W8Z@186806|Eubacteriaceae 186801|Clostridia D Fic/DOC family fic - - ko:K04095 - - - - ko00000,ko03036 - - - Bro-N,Fic HNDODLHM_00365 428125.CLOLEP_00080 4.53e-83 262.0 COG1420@1|root,COG1420@2|Bacteria,1TQP7@1239|Firmicutes,247K2@186801|Clostridia,3WI1X@541000|Ruminococcaceae 186801|Clostridia K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons hrcA - - ko:K03705 - - - - ko00000,ko03000 - - - HrcA,HrcA_DNA-bdg HNDODLHM_00366 1120746.CCNL01000017_gene3180 3.28e-45 155.0 COG0576@1|root,COG0576@2|Bacteria,2NPSS@2323|unclassified Bacteria 2|Bacteria O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ grpE GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0017076,GO:0030234,GO:0030312,GO:0030554,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036094,GO:0040007,GO:0042594,GO:0044464,GO:0050790,GO:0050896,GO:0051082,GO:0051716,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0071496,GO:0071944,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - ko:K03687 - - - - ko00000,ko03029,ko03110 - - - GrpE HNDODLHM_00367 1121334.KB911078_gene1162 0.0 943.0 COG0443@1|root,COG0443@2|Bacteria,1TP1J@1239|Firmicutes,248QV@186801|Clostridia,3WGES@541000|Ruminococcaceae 186801|Clostridia O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 HNDODLHM_00368 428125.CLOLEP_00077 3.22e-190 538.0 COG0484@1|root,COG0484@2|Bacteria,1TP00@1239|Firmicutes,248EM@186801|Clostridia,3WH82@541000|Ruminococcaceae 186801|Clostridia O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686,ko:K05516 - - - - ko00000,ko03029,ko03036,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG HNDODLHM_00369 1120746.CCNL01000017_gene3033 4.39e-144 415.0 COG2264@1|root,COG2264@2|Bacteria,2NPP7@2323|unclassified Bacteria 2|Bacteria J Ribosomal protein L11 methyltransferase prmA - - ko:K02687 - - - - ko00000,ko01000,ko03009 - - - PrmA HNDODLHM_00371 1384066.JAGT01000001_gene872 7.84e-130 376.0 COG0489@1|root,COG0489@2|Bacteria,1TQ34@1239|Firmicutes,24817@186801|Clostridia,3WGBQ@541000|Ruminococcaceae 186801|Clostridia D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP mrp - - - - - - - - - - - ParA HNDODLHM_00374 1385514.N782_12495 8.89e-38 132.0 COG1476@1|root,COG1476@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - - - - - - - - - - HTH_3,MazE_antitoxin HNDODLHM_00375 431943.CKL_2491 5.37e-90 272.0 COG1131@1|root,COG1131@2|Bacteria,1TPMQ@1239|Firmicutes,248QD@186801|Clostridia,36ER8@31979|Clostridiaceae 186801|Clostridia V ATPases associated with a variety of cellular activities - - - ko:K01990,ko:K09695 ko02010,map02010 M00252,M00254 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.102 - - ABC_tran,DUF4162 HNDODLHM_00376 642492.Clole_3259 1.38e-97 292.0 COG1511@1|root,COG1511@2|Bacteria,1TPFN@1239|Firmicutes,24DWU@186801|Clostridia 186801|Clostridia S ABC-2 type transporter - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane HNDODLHM_00377 1410661.JNKW01000002_gene1361 8.87e-62 201.0 COG3503@1|root,COG3503@2|Bacteria,1V8H3@1239|Firmicutes,24JRC@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF1624 HNDODLHM_00379 428125.CLOLEP_03652 2.52e-167 473.0 COG0078@1|root,COG0078@2|Bacteria,1TPF2@1239|Firmicutes,248I5@186801|Clostridia,3WG9U@541000|Ruminococcaceae 186801|Clostridia E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline argF - 2.1.3.3 ko:K00611 ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230 M00029,M00844 R01398 RC00096 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N HNDODLHM_00380 1120746.CCNL01000017_gene3121 1.33e-169 486.0 COG4992@1|root,COG4992@2|Bacteria,2NP1Z@2323|unclassified Bacteria 2|Bacteria E Aminotransferase class-III argD GO:0003674,GO:0003824,GO:0003992,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.11,2.6.1.17 ko:K00821 ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00028,M00845 R02283,R04475 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 HNDODLHM_00381 717606.PaecuDRAFT_2568 4.69e-44 148.0 COG0454@1|root,COG0456@2|Bacteria,1V4GU@1239|Firmicutes,4HQNT@91061|Bacilli,26XKA@186822|Paenibacillaceae 91061|Bacilli K GCN5 family acetyltransferase - - 2.3.1.1 ko:K22477 ko00220,ko01210,ko01230,map00220,map01210,map01230 M00028 R00259 RC00004,RC00064 ko00000,ko00001,ko00002,ko01000 - - - Acetyltransf_1 HNDODLHM_00382 1160721.RBI_I00064 1.59e-20 89.4 COG1943@1|root,COG1943@2|Bacteria,1VCIB@1239|Firmicutes,24MZS@186801|Clostridia,3WQHQ@541000|Ruminococcaceae 186801|Clostridia L Transposase IS200 like - - - - - - - - - - - - Y1_Tnp HNDODLHM_00383 428125.CLOLEP_03650 8.82e-150 427.0 COG0548@1|root,COG0548@2|Bacteria,1TP0N@1239|Firmicutes,2486J@186801|Clostridia,3WGF0@541000|Ruminococcaceae 186801|Clostridia E Belongs to the acetylglutamate kinase family. ArgB subfamily argB - 2.7.2.8 ko:K00930 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R02649 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS10565 AA_kinase HNDODLHM_00384 428125.CLOLEP_03649 3.69e-182 519.0 COG1364@1|root,COG1364@2|Bacteria,1TPBP@1239|Firmicutes,2497Q@186801|Clostridia,3WGSI@541000|Ruminococcaceae 186801|Clostridia E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate argJ - 2.3.1.1,2.3.1.35 ko:K00620 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028 R00259,R02282 RC00004,RC00064 ko00000,ko00001,ko00002,ko01000 - - - ArgJ HNDODLHM_00385 428125.CLOLEP_03648 2.02e-183 517.0 COG0002@1|root,COG0002@2|Bacteria,1TPVI@1239|Firmicutes,247R3@186801|Clostridia,3WGZJ@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde argC - 1.2.1.38 ko:K00145 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R03443 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC HNDODLHM_00386 1120746.CCNL01000017_gene3125 2.3e-230 645.0 COG0165@1|root,COG0165@2|Bacteria,2NP70@2323|unclassified Bacteria 2|Bacteria E argininosuccinate lyase argH GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 ko:K01755,ko:K14681 ko00220,ko00250,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map01100,map01110,map01130,map01210,map01230 M00028,M00029,M00844,M00845 R00259,R01086 RC00004,RC00064,RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ASL_C2,Acetyltransf_1,Lyase_1 HNDODLHM_00387 428125.CLOLEP_03644 2.34e-240 667.0 COG0137@1|root,COG0137@2|Bacteria,1TP3X@1239|Firmicutes,247MF@186801|Clostridia,3WGG9@541000|Ruminococcaceae 186801|Clostridia E Belongs to the argininosuccinate synthase family. Type 1 subfamily argG - 6.3.4.5 ko:K01940 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418 M00029,M00844,M00845 R01954 RC00380,RC00629 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Arginosuc_synth HNDODLHM_00388 469596.HMPREF9488_02212 4.99e-94 291.0 COG1190@1|root,COG1190@2|Bacteria,1TP2P@1239|Firmicutes,3VNV9@526524|Erysipelotrichia 526524|Erysipelotrichia J Belongs to the class-II aminoacyl-tRNA synthetase family lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon,tRNA_bind HNDODLHM_00390 469596.HMPREF9488_02213 2.08e-266 733.0 COG1996@1|root,COG1996@2|Bacteria,1UZSK@1239|Firmicutes,3VQM6@526524|Erysipelotrichia 526524|Erysipelotrichia K This gene contains a nucleotide ambiguity which may be the result of a sequencing error - - - - - - - - - - - - DUF4379 HNDODLHM_00391 500632.CLONEX_00758 2.71e-31 109.0 2DPYU@1|root,33404@2|Bacteria,1VEMP@1239|Firmicutes,24UUX@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00392 469596.HMPREF9488_02215 1.52e-175 491.0 COG1192@1|root,COG1192@2|Bacteria,1TP8S@1239|Firmicutes,3VPAB@526524|Erysipelotrichia 526524|Erysipelotrichia D CobQ CobB MinD ParA nucleotide binding domain protein - - - - - - - - - - - - AAA_31 HNDODLHM_00393 999413.HMPREF1094_00602 4.8e-191 534.0 COG1475@1|root,COG1475@2|Bacteria,1TR7C@1239|Firmicutes,3VSY0@526524|Erysipelotrichia 526524|Erysipelotrichia K DNA binding domain with preference for A/T rich regions - - - - - - - - - - - - ParBc HNDODLHM_00394 999413.HMPREF1094_00601 6.33e-57 187.0 2CAZ8@1|root,2ZG0S@2|Bacteria,1W1JV@1239|Firmicutes 1239|Firmicutes - - - - - - - - - - - - - - - HNDODLHM_00395 999413.HMPREF1094_00600 0.0 2394.0 COG4932@1|root,COG4932@2|Bacteria,1TRG6@1239|Firmicutes,3VPYG@526524|Erysipelotrichia 526524|Erysipelotrichia M Psort location Cellwall, score - - - - - - - - - - - - CarboxypepD_reg HNDODLHM_00397 742735.HMPREF9467_03147 1.8e-58 181.0 2BAZG@1|root,324FD@2|Bacteria,1UQQX@1239|Firmicutes,258H7@186801|Clostridia,223FI@1506553|Lachnoclostridium 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00398 1321372.AQQB01000003_gene1490 4.87e-40 133.0 2C6KJ@1|root,33B28@2|Bacteria,1VKZ3@1239|Firmicutes 1239|Firmicutes - - - - - - - - - - - - - - - HNDODLHM_00399 999413.HMPREF1094_00594 0.0 4291.0 COG0553@1|root,COG0827@1|root,COG4646@1|root,COG0553@2|Bacteria,COG0827@2|Bacteria,COG4646@2|Bacteria,1TPQA@1239|Firmicutes,3VNX4@526524|Erysipelotrichia 526524|Erysipelotrichia L Helicase C-terminal domain protein - - - - - - - - - - - - Helicase_C,SNF2_N HNDODLHM_00400 999413.HMPREF1094_00592 1.18e-180 508.0 COG0358@1|root,COG0358@2|Bacteria,1TSIU@1239|Firmicutes,3VQJE@526524|Erysipelotrichia 526524|Erysipelotrichia L Protein of unknown function (DUF3991) - - - - - - - - - - - - DUF3991,Toprim_2 HNDODLHM_00401 999413.HMPREF1094_00591 4.06e-59 191.0 COG4734@1|root,COG4734@2|Bacteria,1UXVY@1239|Firmicutes,3VRZH@526524|Erysipelotrichia 526524|Erysipelotrichia S Domain of unknown function (DUF3846) - - - - - - - - - - - - DUF3846 HNDODLHM_00402 742735.HMPREF9467_03137 3.62e-68 207.0 2CDK1@1|root,32G0D@2|Bacteria,1V6YH@1239|Firmicutes,24K20@186801|Clostridia,223BH@1506553|Lachnoclostridium 186801|Clostridia - - - - - - - - - - - - - - MobC,RHH_1 HNDODLHM_00403 999413.HMPREF1094_00589 3.18e-287 789.0 COG3843@1|root,COG3843@2|Bacteria,1TPRX@1239|Firmicutes,3VSZ6@526524|Erysipelotrichia 526524|Erysipelotrichia U Relaxase/Mobilisation nuclease domain - - - - - - - - - - - - Relaxase HNDODLHM_00404 999413.HMPREF1094_00588 4.39e-149 424.0 295P2@1|root,2ZT0F@2|Bacteria,1TT96@1239|Firmicutes,3VR6M@526524|Erysipelotrichia 526524|Erysipelotrichia S Protein of unknown function (DUF3801) - - - - - - - - - - - - DUF3801 HNDODLHM_00405 999413.HMPREF1094_00587 6.72e-189 527.0 COG4227@1|root,COG4227@2|Bacteria,1TQN4@1239|Firmicutes,3VPGC@526524|Erysipelotrichia 1239|Firmicutes L Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - DUF3991,Peptidase_M78,Toprim_2 HNDODLHM_00406 999413.HMPREF1094_00586 1.72e-36 123.0 2DIMJ@1|root,303N8@2|Bacteria,1TUWK@1239|Firmicutes,3VTZW@526524|Erysipelotrichia 526524|Erysipelotrichia - - - - - - - - - - - - - - - HNDODLHM_00407 999413.HMPREF1094_00585 0.0 1108.0 COG3505@1|root,COG3505@2|Bacteria,1TPCF@1239|Firmicutes,3VP0A@526524|Erysipelotrichia 526524|Erysipelotrichia U Psort location Cytoplasmic, score - - - - - - - - - - - - T4SS-DNA_transf,TraG-D_C HNDODLHM_00408 1160721.RBI_I01296 1.5e-65 201.0 2DMPF@1|root,32SVU@2|Bacteria,1VA0M@1239|Firmicutes,24JF3@186801|Clostridia,3WK52@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_00409 1321372.AQQB01000003_gene1504 1.42e-182 509.0 2DB6V@1|root,2Z7IJ@2|Bacteria,1TRNS@1239|Firmicutes 1239|Firmicutes S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - TrbL HNDODLHM_00410 397288.C806_04801 8.09e-64 204.0 28IH7@1|root,2Z8IH@2|Bacteria,1UZB7@1239|Firmicutes,25AH9@186801|Clostridia,27QFR@186928|unclassified Lachnospiraceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00411 999413.HMPREF1094_00581 1.37e-78 234.0 COG3451@1|root,COG3451@2|Bacteria,1V6F7@1239|Firmicutes,3VR49@526524|Erysipelotrichia 526524|Erysipelotrichia U PrgI family protein - - - - - - - - - - - - PrgI HNDODLHM_00412 1321372.AQQB01000003_gene1506 0.0 1437.0 COG3451@1|root,COG3451@2|Bacteria,1TPDR@1239|Firmicutes,4HUB9@91061|Bacilli,1WSV1@1307|Streptococcus suis 91061|Bacilli U 'COG3451 Type IV secretory pathway, VirB4 components' XK27_00545 - - - - - - - - - - - DUF87 HNDODLHM_00413 483218.BACPEC_01739 2.65e-93 272.0 2CUHA@1|root,32SVB@2|Bacteria,1V9BJ@1239|Firmicutes,24MJT@186801|Clostridia,269DH@186813|unclassified Clostridiales 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00414 999413.HMPREF1094_00579 4.98e-143 407.0 COG4509@1|root,COG4509@2|Bacteria,1V7UG@1239|Firmicutes,3VS09@526524|Erysipelotrichia 526524|Erysipelotrichia S Sortase family - - - - - - - - - - - - Sortase HNDODLHM_00416 469596.HMPREF9488_02235 6.9e-290 806.0 COG0741@1|root,COG0741@2|Bacteria,1UJ05@1239|Firmicutes 1239|Firmicutes M Lysozyme-like - - - - - - - - - - - - CHAP,Lysozyme_like,Peptidase_M23 HNDODLHM_00417 469596.HMPREF9488_02236 2.16e-98 286.0 2EPV7@1|root,33HFP@2|Bacteria,1VN4R@1239|Firmicutes 1239|Firmicutes - - - - - - - - - - - - - - - HNDODLHM_00418 1499683.CCFF01000014_gene3594 2.27e-195 583.0 COG1523@1|root,COG1523@2|Bacteria,1TP3M@1239|Firmicutes,2481P@186801|Clostridia,36E5I@31979|Clostridiaceae 186801|Clostridia G Belongs to the glycosyl hydrolase 13 family pulA - 3.2.1.41 ko:K01200 ko00500,ko01100,ko01110,map00500,map01100,map01110 - R02111 - ko00000,ko00001,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48 HNDODLHM_00419 1499683.CCFF01000014_gene3594 1.69e-182 554.0 COG1523@1|root,COG1523@2|Bacteria,1TP3M@1239|Firmicutes,2481P@186801|Clostridia,36E5I@31979|Clostridiaceae 186801|Clostridia G Belongs to the glycosyl hydrolase 13 family pulA - 3.2.1.41 ko:K01200 ko00500,ko01100,ko01110,map00500,map01100,map01110 - R02111 - ko00000,ko00001,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48 HNDODLHM_00420 1120746.CCNL01000013_gene1988 6.02e-87 262.0 COG2344@1|root,COG2344@2|Bacteria,2NPI1@2323|unclassified Bacteria 2|Bacteria K Modulates transcription in response to changes in cellular NADH NAD( ) redox state rex - - ko:K01926 - - - - ko00000,ko03000 - - - CoA_binding,Put_DNA-bind_N HNDODLHM_00421 1160721.RBI_I01385 3.29e-239 663.0 COG0538@1|root,COG0538@2|Bacteria,1TSKB@1239|Firmicutes,247KX@186801|Clostridia,3WGXI@541000|Ruminococcaceae 186801|Clostridia C Belongs to the isocitrate and isopropylmalate dehydrogenases family icd - 1.1.1.42 ko:K00031 ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00740 R00267,R00268,R01899 RC00001,RC00084,RC00114,RC00626,RC02801 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh HNDODLHM_00422 1410617.JHXH01000004_gene1288 0.0 1005.0 COG1048@1|root,COG1048@2|Bacteria,1VTMM@1239|Firmicutes,25HJM@186801|Clostridia,3WG9R@541000|Ruminococcaceae 186801|Clostridia C aconitate hydratase acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C HNDODLHM_00423 428125.CLOLEP_01967 0.0 936.0 COG0855@1|root,COG0855@2|Bacteria,1TNZM@1239|Firmicutes,248XY@186801|Clostridia,3WGAB@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) ppk - 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PP_kinase,PP_kinase_C,PP_kinase_N HNDODLHM_00424 428125.CLOLEP_01968 2e-184 521.0 COG0205@1|root,COG0205@2|Bacteria,1TPF4@1239|Firmicutes,249AM@186801|Clostridia,3WGG1@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis pfkA - 2.7.1.11,2.7.1.90 ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130 - R00756,R00764,R02073,R03236,R04779 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PFK HNDODLHM_00426 1462527.CCDM010000003_gene3763 1.84e-41 141.0 COG2315@1|root,COG2315@2|Bacteria,1VBCB@1239|Firmicutes,4I30E@91061|Bacilli,23N4Y@182709|Oceanobacillus 1239|Firmicutes S YjbR - - - - - - - - - - - - YjbR HNDODLHM_00428 1120746.CCNL01000004_gene64 2.73e-135 394.0 COG0042@1|root,COG0042@2|Bacteria,2NP3E@2323|unclassified Bacteria 2|Bacteria J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines dus - - ko:K05540 - - - - ko00000,ko01000,ko03016 - - - Dus HNDODLHM_00429 428125.CLOLEP_03259 5.39e-250 692.0 COG0112@1|root,COG0112@2|Bacteria,1TQVM@1239|Firmicutes,248W5@186801|Clostridia,3WGJK@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism glyA - 2.1.2.1 ko:K00600 ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523 M00140,M00141,M00346,M00532 R00945,R09099 RC00022,RC00112,RC01583,RC02958 ko00000,ko00001,ko00002,ko01000 - - - SHMT HNDODLHM_00431 877414.ATWA01000045_gene1862 2.5e-45 149.0 COG0758@1|root,COG0758@2|Bacteria 2|Bacteria LU DNA mediated transformation smf - - ko:K04096 - - - - ko00000 - - - DNA_processg_A,DUF2493,MoCo_carrier HNDODLHM_00432 1033737.CAEV01000062_gene2983 5.36e-37 133.0 COG0671@1|root,COG0671@2|Bacteria,1V7XD@1239|Firmicutes,25BF5@186801|Clostridia,36WGI@31979|Clostridiaceae 186801|Clostridia I Acid phosphatase homologues - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 HNDODLHM_00433 428125.CLOLEP_02457 8.68e-138 401.0 COG0183@1|root,COG0183@2|Bacteria,1UHVW@1239|Firmicutes,248BM@186801|Clostridia,3WSI5@541000|Ruminococcaceae 186801|Clostridia I Stage V sporulation protein AD spoVAD - - ko:K06406 - - - - ko00000 - - - SpoVAD HNDODLHM_00434 428125.CLOLEP_00382 1.89e-53 198.0 COG2720@1|root,COG2720@2|Bacteria,1TSH8@1239|Firmicutes,2493X@186801|Clostridia,3WRXM@541000|Ruminococcaceae 186801|Clostridia V VanW like protein vanW - - ko:K18346 ko01502,ko02020,map01502,map02020 M00651 - - ko00000,ko00001,ko00002,ko01504 - - - G5,PG_binding_4,VanW HNDODLHM_00435 877411.JMMA01000002_gene2598 9.88e-158 444.0 COG1211@1|root,COG1211@2|Bacteria,1TS1B@1239|Firmicutes,2484P@186801|Clostridia,3WJ9I@541000|Ruminococcaceae 186801|Clostridia I 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - - 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - - IspD HNDODLHM_00436 877411.JMMA01000002_gene2599 9.18e-157 451.0 COG0451@1|root,COG0451@2|Bacteria,1TS59@1239|Firmicutes,247JP@186801|Clostridia,3WJ79@541000|Ruminococcaceae 186801|Clostridia GM epimerase dehydratase - - 4.1.1.35,4.2.1.46 ko:K01710,ko:K08678 ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130 M00361,M00793 R01384,R06513 RC00402,RC00508 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd HNDODLHM_00437 246199.CUS_7277 5.17e-78 263.0 COG3475@1|root,COG3475@2|Bacteria,1VBSV@1239|Firmicutes,24C5H@186801|Clostridia,3WKAI@541000|Ruminococcaceae 186801|Clostridia M LicD family licD - - ko:K07271 - - - - ko00000,ko01000 - - - LicD HNDODLHM_00438 622312.ROSEINA2194_04006 1.2e-82 249.0 COG1247@1|root,COG1247@2|Bacteria,1V6X5@1239|Firmicutes,24IB5@186801|Clostridia 186801|Clostridia M Acetyltransferase GNAT family pat - 2.3.1.183 ko:K03823 ko00440,ko01130,map00440,map01130 - R08871,R08938 RC00004,RC00064 ko00000,ko00001,ko01000 - - - Acetyltransf_4 HNDODLHM_00440 1120746.CCNL01000010_gene1166 8.61e-100 296.0 COG1191@1|root,COG1191@2|Bacteria,2NR0Y@2323|unclassified Bacteria 2|Bacteria K Sigma-70 region 2 sigK - - ko:K03091 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4 HNDODLHM_00441 665956.HMPREF1032_01860 1.03e-173 502.0 COG2252@1|root,COG2252@2|Bacteria,1TQC6@1239|Firmicutes,2483Q@186801|Clostridia,3WP2F@541000|Ruminococcaceae 186801|Clostridia S Permease family - - - ko:K06901 - - - - ko00000,ko02000 2.A.1.40 - - Xan_ur_permease HNDODLHM_00442 246199.CUS_8114 1.8e-59 187.0 COG1959@1|root,COG1959@2|Bacteria,1V3QB@1239|Firmicutes,24JIV@186801|Clostridia,3WJN5@541000|Ruminococcaceae 186801|Clostridia K Transcriptional regulator - - - - - - - - - - - - Rrf2 HNDODLHM_00443 511680.BUTYVIB_00785 3.22e-32 123.0 COG0204@1|root,COG0204@2|Bacteria,1V4XW@1239|Firmicutes 1239|Firmicutes I Acyltransferase plsD - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase HNDODLHM_00444 1410638.JHXJ01000001_gene1910 3.98e-26 98.6 COG0236@1|root,COG0236@2|Bacteria,1W4GV@1239|Firmicutes,255Z4@186801|Clostridia 186801|Clostridia IQ Phosphopantetheine attachment site - - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding HNDODLHM_00445 1410638.JHXJ01000001_gene1911 2.57e-264 754.0 COG0304@1|root,COG0304@2|Bacteria,1TPA7@1239|Firmicutes,247VF@186801|Clostridia,3WGGB@541000|Ruminococcaceae 186801|Clostridia I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - 2.3.1.179 ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt HNDODLHM_00446 1410638.JHXJ01000001_gene1912 8.69e-107 315.0 COG1028@1|root,COG1028@2|Bacteria,1TP76@1239|Firmicutes,247PV@186801|Clostridia,3WGIW@541000|Ruminococcaceae 186801|Clostridia IQ reductase - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short,adh_short_C2 HNDODLHM_00447 515620.EUBELI_20279 5.15e-61 192.0 COG0764@1|root,COG0764@2|Bacteria,1VWSM@1239|Firmicutes,252FM@186801|Clostridia 186801|Clostridia I K02372 3R-hydroxymyristoyl ACP dehydrase - - 4.2.1.59 ko:K02372 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121 RC00831,RC01095 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FabA HNDODLHM_00448 1410638.JHXJ01000001_gene1913 3.66e-84 257.0 COG0655@1|root,COG0655@2|Bacteria,1TRKM@1239|Firmicutes,24AD6@186801|Clostridia,3WJYP@541000|Ruminococcaceae 186801|Clostridia S NADPH-dependent FMN reductase - - - - - - - - - - - - FMN_red,Flavodoxin_2,SCP2 HNDODLHM_00449 1211819.CALK01000034_gene176 2.95e-18 86.3 COG1309@1|root,COG1309@2|Bacteria,1VC54@1239|Firmicutes,3VUFT@526524|Erysipelotrichia 526524|Erysipelotrichia K Transcriptional regulator C-terminal region - - - - - - - - - - - - TetR_C_8,TetR_N HNDODLHM_00450 515620.EUBELI_20326 4.22e-70 225.0 COG4667@1|root,COG4667@2|Bacteria,1TQ9W@1239|Firmicutes,2485C@186801|Clostridia,25VW9@186806|Eubacteriaceae 186801|Clostridia S esterase of the alpha-beta hydrolase superfamily - - - - - - - - - - - - Patatin HNDODLHM_00452 500632.CLONEX_03122 4.4e-72 219.0 COG0789@1|root,COG0789@2|Bacteria,1V3QI@1239|Firmicutes,25B3D@186801|Clostridia 186801|Clostridia K Transcriptional regulator - - - - - - - - - - - - MerR_1 HNDODLHM_00454 1195236.CTER_2866 2.85e-45 152.0 COG1595@1|root,COG1595@2|Bacteria,1V183@1239|Firmicutes,25BIR@186801|Clostridia,3WK0C@541000|Ruminococcaceae 186801|Clostridia K Sigma-70, region 4 - - - - - - - - - - - - Sigma70_r2,Sigma70_r4_2 HNDODLHM_00455 938293.CAJU020000020_gene285 6.96e-06 54.3 COG5660@1|root,COG5660@2|Bacteria,1VKXY@1239|Firmicutes,24UK9@186801|Clostridia,22I02@1570339|Peptoniphilaceae 186801|Clostridia S Putative zinc-finger - - - - - - - - - - - - zf-HC2 HNDODLHM_00456 1235797.C816_00624 2.1e-55 176.0 COG0242@1|root,COG0242@2|Bacteria,1V73T@1239|Firmicutes,24FT0@186801|Clostridia,2N7D7@216572|Oscillospiraceae 186801|Clostridia J Removes the formyl group from the N-terminal Met of newly synthesized proteins def2 - 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase HNDODLHM_00457 428125.CLOLEP_03750 1.2e-98 297.0 COG0169@1|root,COG0169@2|Bacteria,1TQRY@1239|Firmicutes,2497S@186801|Clostridia,3WGF4@541000|Ruminococcaceae 186801|Clostridia E Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) aroE - 1.1.1.25 ko:K00014 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02413 RC00206 ko00000,ko00001,ko00002,ko01000 - - - SKI,Shikimate_DH,Shikimate_dh_N HNDODLHM_00458 428125.CLOLEP_03749 1.4e-57 185.0 COG0703@1|root,COG0703@2|Bacteria,1VA6Z@1239|Firmicutes,24MQY@186801|Clostridia,3WJBW@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK - 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - CM_2,SKI HNDODLHM_00459 428125.CLOLEP_03746 3.3e-186 524.0 COG2876@1|root,COG2876@2|Bacteria,1TP61@1239|Firmicutes,24812@186801|Clostridia,3WG9J@541000|Ruminococcaceae 186801|Clostridia E synthase aroF - 2.5.1.54 ko:K03856 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01826 RC00435 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS14395 DAHP_synth_1 HNDODLHM_00460 428125.CLOLEP_03745 2.27e-120 352.0 COG0287@1|root,COG0287@2|Bacteria,1TPXG@1239|Firmicutes,248KX@186801|Clostridia,3WI06@541000|Ruminococcaceae 186801|Clostridia E prephenate dehydrogenase tyrA - 1.3.1.12 ko:K04517 ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230 M00025 R01728 RC00125 ko00000,ko00001,ko00002,ko01000 - - - PDH HNDODLHM_00461 428125.CLOLEP_03744 9.57e-126 372.0 COG0337@1|root,COG0337@2|Bacteria,1TPKZ@1239|Firmicutes,248H4@186801|Clostridia,3WGPK@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase HNDODLHM_00462 1120746.CCNL01000017_gene3029 8.94e-148 433.0 COG0128@1|root,COG0128@2|Bacteria,2NNZ5@2323|unclassified Bacteria 2|Bacteria E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate aroA GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 ko:K00800 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03460 RC00350 ko00000,ko00001,ko00002,ko01000 - - - EPSP_synthase HNDODLHM_00463 1121334.KB911071_gene2137 3.98e-155 447.0 COG0082@1|root,COG0082@2|Bacteria,1TQ40@1239|Firmicutes,24998@186801|Clostridia,3WG94@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC - 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt HNDODLHM_00464 1120746.CCNL01000017_gene3031 1.3e-128 381.0 COG0077@1|root,COG0077@2|Bacteria,2NR2C@2323|unclassified Bacteria 2|Bacteria E Prephenate dehydratase pheA - 4.2.1.51,5.4.99.5 ko:K04518,ko:K14170 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00024,M00025 R00691,R01373,R01715 RC00360,RC03116 ko00000,ko00001,ko00002,ko01000 - - - ACT,CM_2,PDT HNDODLHM_00465 428125.CLOLEP_02293 4.41e-30 111.0 COG1396@1|root,COG1396@2|Bacteria,1VK84@1239|Firmicutes,24SKI@186801|Clostridia,3WRBK@541000|Ruminococcaceae 186801|Clostridia K DNA-binding helix-turn-helix protein - - - - - - - - - - - - HTH_3 HNDODLHM_00466 903814.ELI_0510 1.08e-148 430.0 COG3049@1|root,COG3049@2|Bacteria,1TRTI@1239|Firmicutes,24AFG@186801|Clostridia,25X6F@186806|Eubacteriaceae 186801|Clostridia M Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - - - - - - - - - - AAT,CBAH HNDODLHM_00467 478749.BRYFOR_09130 5.41e-139 412.0 COG3290@1|root,COG3290@2|Bacteria,1UY02@1239|Firmicutes,24BV9@186801|Clostridia 186801|Clostridia T Psort location CytoplasmicMembrane, score - - - - - - - - - - - - HATPase_c_5 HNDODLHM_00468 1235802.C823_01109 4.46e-85 259.0 COG3279@1|root,COG3279@2|Bacteria,1VA5A@1239|Firmicutes,24C2K@186801|Clostridia,25WVY@186806|Eubacteriaceae 186801|Clostridia K LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg HNDODLHM_00469 97139.C824_00384 0.0 944.0 COG2015@1|root,COG2015@2|Bacteria,1TR7Q@1239|Firmicutes,248SN@186801|Clostridia,36K01@31979|Clostridiaceae 186801|Clostridia Q Alkyl sulfatase dimerisation - - - - - - - - - - - - Alkyl_sulf_C,Alkyl_sulf_dimr,Lactamase_B HNDODLHM_00474 411902.CLOBOL_04981 3.79e-93 279.0 COG1394@1|root,COG1394@2|Bacteria,1TQ1Y@1239|Firmicutes,247TC@186801|Clostridia,21XKD@1506553|Lachnoclostridium 186801|Clostridia C Produces ATP from ADP in the presence of a proton gradient across the membrane atpD - - ko:K02120 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_D HNDODLHM_00475 1232443.BAIA02000097_gene3413 1.52e-288 793.0 COG1156@1|root,COG1156@2|Bacteria,1VSU1@1239|Firmicutes,2496H@186801|Clostridia,267RU@186813|unclassified Clostridiales 186801|Clostridia C Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit atpB - - ko:K02118 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_ab,ATP-synt_ab_N HNDODLHM_00476 1235835.C814_00049 7.05e-317 876.0 COG1155@1|root,COG1155@2|Bacteria,1TPGS@1239|Firmicutes,24882@186801|Clostridia,3WGBK@541000|Ruminococcaceae 186801|Clostridia C Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit ntpA - 3.6.3.14,3.6.3.15 ko:K02117 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002,ko01000 3.A.2.2,3.A.2.3 - - ATP-synt_ab,ATP-synt_ab_N,ATP-synt_ab_Xtn HNDODLHM_00477 1232443.BAIA02000097_gene3411 1.72e-31 114.0 COG1436@1|root,COG1436@2|Bacteria,1VAX7@1239|Firmicutes,24MXC@186801|Clostridia 186801|Clostridia C Produces ATP from ADP in the presence of a proton gradient across the membrane atpF - - ko:K02122 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_F HNDODLHM_00480 1151292.QEW_3577 5.39e-38 134.0 COG0636@1|root,COG0636@2|Bacteria,1V786@1239|Firmicutes,24HBF@186801|Clostridia,25TT6@186804|Peptostreptococcaceae 186801|Clostridia C ATP synthase subunit C ntpK - - ko:K02124 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_C HNDODLHM_00481 742735.HMPREF9467_01607 9.31e-153 464.0 COG1269@1|root,COG1269@2|Bacteria,1TPTE@1239|Firmicutes,249YV@186801|Clostridia,21YR6@1506553|Lachnoclostridium 186801|Clostridia C Belongs to the V-ATPase 116 kDa subunit family ntpI - - ko:K02123 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - V_ATPase_I HNDODLHM_00483 411469.EUBHAL_00036 1.23e-73 225.0 COG2606@1|root,COG2606@2|Bacteria,1V6JF@1239|Firmicutes,24I4E@186801|Clostridia,25WMS@186806|Eubacteriaceae 186801|Clostridia S Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily ybaK - - ko:K03976 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit HNDODLHM_00484 445971.ANASTE_00408 0.0 959.0 COG0841@1|root,COG0841@2|Bacteria,1TQ03@1239|Firmicutes,2491S@186801|Clostridia,25V9F@186806|Eubacteriaceae 186801|Clostridia V Psort location CytoplasmicMembrane, score 10.00 czcA - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran HNDODLHM_00485 1232449.BAHV02000018_gene1627 3.34e-27 109.0 COG1309@1|root,COG1309@2|Bacteria,1V6CF@1239|Firmicutes,25BKD@186801|Clostridia,26CPB@186813|unclassified Clostridiales 186801|Clostridia K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N HNDODLHM_00486 397287.C807_03757 1.45e-72 221.0 COG0394@1|root,COG0394@2|Bacteria,1V6SG@1239|Firmicutes,24MMZ@186801|Clostridia,27NAT@186928|unclassified Lachnospiraceae 186801|Clostridia T Low molecular weight phosphatase family yfkJ - 3.1.3.48 ko:K01104 - - - - ko00000,ko01000 - - - LMWPc HNDODLHM_00489 1160721.RBI_I00538 8.07e-88 270.0 COG1682@1|root,COG1682@2|Bacteria,1TQZF@1239|Firmicutes,248R0@186801|Clostridia,3WKBW@541000|Ruminococcaceae 186801|Clostridia GM ABC-2 type transporter tagG - - ko:K09692 ko02010,map02010 M00251 - - ko00000,ko00001,ko00002,ko02000 3.A.1.104 - - ABC2_membrane HNDODLHM_00490 1160721.RBI_I00539 3.06e-108 319.0 COG1134@1|root,COG1134@2|Bacteria,1TQKK@1239|Firmicutes,24A5V@186801|Clostridia,3WHVP@541000|Ruminococcaceae 186801|Clostridia GM Psort location CytoplasmicMembrane, score tagH - 3.6.3.40 ko:K01990,ko:K09691,ko:K09693 ko02010,map02010 M00250,M00251,M00254 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1,3.A.1.103,3.A.1.104 - - ABC_tran,Wzt_C HNDODLHM_00491 877411.JMMA01000002_gene2599 7.48e-65 217.0 COG0451@1|root,COG0451@2|Bacteria,1TS59@1239|Firmicutes,247JP@186801|Clostridia,3WJ79@541000|Ruminococcaceae 186801|Clostridia GM epimerase dehydratase - - 4.1.1.35,4.2.1.46 ko:K01710,ko:K08678 ko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130 M00361,M00793 R01384,R06513 RC00402,RC00508 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd HNDODLHM_00492 697329.Rumal_2992 1.34e-64 227.0 COG3475@1|root,COG3475@2|Bacteria,1VBSV@1239|Firmicutes,24C5H@186801|Clostridia,3WKAI@541000|Ruminococcaceae 186801|Clostridia M LicD family licD - - ko:K07271 - - - - ko00000,ko01000 - - - LicD HNDODLHM_00494 720554.Clocl_1778 2.07e-100 373.0 COG3291@1|root,COG4733@1|root,COG5267@1|root,COG3291@2|Bacteria,COG4733@2|Bacteria,COG5267@2|Bacteria,1TRGT@1239|Firmicutes,24DXY@186801|Clostridia,3WHXI@541000|Ruminococcaceae 186801|Clostridia S PKD domain - - - - - - - - - - - - CARDB,PKD,SLH HNDODLHM_00495 1211844.CBLM010000055_gene429 2e-40 140.0 COG1329@1|root,COG1329@2|Bacteria,1V7IF@1239|Firmicutes,3VRZS@526524|Erysipelotrichia 526524|Erysipelotrichia K CarD-like/TRCF domain - - - - - - - - - - - - CarD_CdnL_TRCF HNDODLHM_00496 573061.Clocel_0310 0.000589 52.0 COG3055@1|root,COG5492@1|root,COG3055@2|Bacteria,COG5492@2|Bacteria,1V5WF@1239|Firmicutes,24H47@186801|Clostridia,36IV6@31979|Clostridiaceae 186801|Clostridia N PFAM Kelch - - - - - - - - - - - - Big_2,Kelch_1 HNDODLHM_00497 552398.HMPREF0866_02539 2.24e-129 385.0 COG1472@1|root,COG1472@2|Bacteria,1TP63@1239|Firmicutes,24YIP@186801|Clostridia,3WG7U@541000|Ruminococcaceae 186801|Clostridia G Hydrolase Family 3 - - 3.2.1.52 ko:K01207 ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501 M00628 R00022,R05963,R07809,R07810,R10831 RC00049 ko00000,ko00001,ko00002,ko01000 - - - Glyco_hydro_3 HNDODLHM_00498 97139.C824_03631 3.11e-65 202.0 COG1671@1|root,COG1671@2|Bacteria,1V9Z0@1239|Firmicutes,24HPW@186801|Clostridia,36J4K@31979|Clostridiaceae 186801|Clostridia S Belongs to the UPF0178 family - - - ko:K09768 - - - - ko00000 - - - DUF188 HNDODLHM_00499 877421.AUJT01000028_gene2075 1.64e-80 247.0 COG0652@1|root,COG0652@2|Bacteria,1V1SP@1239|Firmicutes,24G4H@186801|Clostridia,27MJD@186928|unclassified Lachnospiraceae 186801|Clostridia O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - 5.2.1.8 ko:K01802 - - - - ko00000,ko01000 - - - Pro_isomerase HNDODLHM_00500 926569.ANT_26220 1.8e-92 282.0 COG1682@1|root,COG1682@2|Bacteria 2|Bacteria GM macromolecule localization wzm - - ko:K01992,ko:K09690 ko02010,map02010 M00250,M00254 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.103 - - ABC2_membrane HNDODLHM_00501 1280673.AUJJ01000008_gene706 5.12e-139 411.0 COG1134@1|root,COG1134@2|Bacteria,1TQKK@1239|Firmicutes,24A5V@186801|Clostridia,4BYR2@830|Butyrivibrio 186801|Clostridia GM ATPases associated with a variety of cellular activities - - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C HNDODLHM_00502 428125.CLOLEP_01588 8.62e-84 254.0 COG0860@1|root,COG3103@1|root,COG0860@2|Bacteria,COG3103@2|Bacteria,1TQ50@1239|Firmicutes,249IF@186801|Clostridia,3WIH3@541000|Ruminococcaceae 186801|Clostridia MT N-acetylmuramoyl-L-alanine amidase - - 3.5.1.28 ko:K01448 ko01503,map01503 M00727 R04112 RC00064,RC00141 ko00000,ko00001,ko00002,ko01000,ko01011,ko03036 - - - Amidase_3,SH3_3,SPOR HNDODLHM_00505 1280696.ATVY01000065_gene2588 5.13e-224 634.0 COG0366@1|root,COG0366@2|Bacteria,1TP53@1239|Firmicutes,247XR@186801|Clostridia,4BW9U@830|Butyrivibrio 186801|Clostridia G Alpha-amylase domain - - 3.2.1.1,5.4.99.16 ko:K01176,ko:K05343 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R01557,R02108,R02112,R11262 RC01816 ko00000,ko00001,ko01000 - GH13 - Alpha-amylase HNDODLHM_00507 1378168.N510_01349 1.61e-19 80.1 2EJ02@1|root,33CR7@2|Bacteria,1VPEQ@1239|Firmicutes 1239|Firmicutes S Psort location Cytoplasmic, score - - - - - - - - - - - - Arc HNDODLHM_00508 877414.ATWA01000045_gene1862 1.07e-48 157.0 COG0758@1|root,COG0758@2|Bacteria 2|Bacteria LU DNA mediated transformation smf - - ko:K04096 - - - - ko00000 - - - DNA_processg_A,DUF2493,MoCo_carrier HNDODLHM_00510 428125.CLOLEP_02484 0.0 1298.0 COG0525@1|root,COG0525@2|Bacteria,1TPN4@1239|Firmicutes,248VC@186801|Clostridia,3WHFT@541000|Ruminococcaceae 186801|Clostridia J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner valS - 6.1.1.9 ko:K01873 ko00970,map00970 M00359,M00360 R03665 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1 HNDODLHM_00511 1235792.C808_02438 4.3e-233 644.0 COG1063@1|root,COG1063@2|Bacteria,1TS6I@1239|Firmicutes,2493N@186801|Clostridia,27TH1@186928|unclassified Lachnospiraceae 186801|Clostridia E Glucose dehydrogenase C-terminus - - 1.1.1.103,1.1.1.14 ko:K00008,ko:K00060 ko00040,ko00051,ko00260,ko01100,map00040,map00051,map00260,map01100 M00014 R00875,R01465,R01896 RC00085,RC00102,RC00525 ko00000,ko00001,ko00002,ko01000 - - - ADH_N,ADH_zinc_N HNDODLHM_00512 1232447.BAHW02000009_gene333 5.05e-142 403.0 COG0036@1|root,COG0036@2|Bacteria,1TQK8@1239|Firmicutes,248AR@186801|Clostridia,268XI@186813|unclassified Clostridiales 186801|Clostridia G Ribulose-phosphate 3 epimerase family - - 5.1.3.1 ko:K01783,ko:K17195 ko00030,ko00040,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01529,R09031 RC00540,RC03111 ko00000,ko00001,ko00002,ko01000 - - - Ribul_P_3_epim HNDODLHM_00513 1235792.C808_02440 1.02e-267 740.0 COG2271@1|root,COG2271@2|Bacteria,1UHSG@1239|Firmicutes,249UT@186801|Clostridia,27RBF@186928|unclassified Lachnospiraceae 186801|Clostridia G Sugar (and other) transporter - - - ko:K08369 - - - - ko00000,ko02000 2.A.1 - - MFS_1,Sugar_tr HNDODLHM_00514 1232453.BAIF02000087_gene258 6.03e-216 600.0 COG1063@1|root,COG1063@2|Bacteria,1TPWP@1239|Firmicutes,24FHS@186801|Clostridia 186801|Clostridia E Glucose dehydrogenase C-terminus - - - - - - - - - - - - ADH_N,ADH_zinc_N HNDODLHM_00515 1232447.BAHW02000009_gene336 1.1e-191 533.0 COG0191@1|root,COG0191@2|Bacteria,1TQ01@1239|Firmicutes,248B7@186801|Clostridia,268GH@186813|unclassified Clostridiales 186801|Clostridia G Fructose-bisphosphate aldolase class-II - - - - - - - - - - - - F_bP_aldolase HNDODLHM_00516 411460.RUMTOR_00803 2.47e-159 454.0 COG0524@1|root,COG0524@2|Bacteria,1UYF8@1239|Firmicutes,25MKN@186801|Clostridia,3Y0ZH@572511|Blautia 186801|Clostridia G Phosphomethylpyrimidine kinase - - - - - - - - - - - - PfkB HNDODLHM_00517 411460.RUMTOR_00802 1.07e-219 608.0 COG0667@1|root,COG0667@2|Bacteria,1TPIY@1239|Firmicutes,24AVD@186801|Clostridia,3XZZ3@572511|Blautia 186801|Clostridia C Aldo/keto reductase family - - - ko:K18471 ko00640,map00640 - R10718 RC00739 ko00000,ko00001,ko01000 - - - Aldo_ket_red HNDODLHM_00518 526218.Sterm_3215 4.62e-76 238.0 COG1349@1|root,COG1349@2|Bacteria,37AQJ@32066|Fusobacteria 32066|Fusobacteria K Transcriptional regulator, DeoR family - - - - - - - - - - - - DeoRC,HTH_DeoR HNDODLHM_00519 1235792.C808_02449 8.69e-239 666.0 COG1301@1|root,COG1301@2|Bacteria,1TPME@1239|Firmicutes,247UX@186801|Clostridia,27JSN@186928|unclassified Lachnospiraceae 186801|Clostridia C Sodium:dicarboxylate symporter family - - - - - - - - - - - - SDF HNDODLHM_00520 1160721.RBI_I00653 8.01e-216 602.0 COG0371@1|root,COG0371@2|Bacteria,1TQFU@1239|Firmicutes,248KH@186801|Clostridia,3WMZC@541000|Ruminococcaceae 186801|Clostridia C Iron-containing alcohol dehydrogenase gldA - 1.1.1.6 ko:K00005 ko00561,ko00640,ko01100,map00561,map00640,map01100 - R01034,R10715,R10717 RC00029,RC00117,RC00670 ko00000,ko00001,ko01000 - - - Fe-ADH HNDODLHM_00521 1519439.JPJG01000055_gene2199 5.22e-265 744.0 COG1001@1|root,COG1001@2|Bacteria,1TP84@1239|Firmicutes,247KN@186801|Clostridia,2N6Y1@216572|Oscillospiraceae 186801|Clostridia F Adenine deaminase C-terminal domain ade - 3.5.4.2 ko:K01486 ko00230,ko01100,map00230,map01100 - R01244 RC00477 ko00000,ko00001,ko01000 - - - Adenine_deam_C,Amidohydro_1 HNDODLHM_00522 140626.JHWB01000022_gene2089 2.8e-25 107.0 28KBJ@1|root,2Z9YJ@2|Bacteria,1V10F@1239|Firmicutes,24WPP@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00525 1235799.C818_01939 3.23e-92 275.0 COG1131@1|root,COG1131@2|Bacteria,1V1P4@1239|Firmicutes,249VI@186801|Clostridia,27K3J@186928|unclassified Lachnospiraceae 186801|Clostridia V ATPases associated with a variety of cellular activities - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00529 1105031.HMPREF1141_3135 2.35e-76 241.0 2CC4I@1|root,2Z8PZ@2|Bacteria,1TQTT@1239|Firmicutes,24AJ3@186801|Clostridia,36F6T@31979|Clostridiaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00530 706433.HMPREF9430_01413 7.01e-57 184.0 COG0560@1|root,COG0560@2|Bacteria,1V8Y8@1239|Firmicutes,3VQNW@526524|Erysipelotrichia 526524|Erysipelotrichia E haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD HNDODLHM_00532 1211817.CCAT010000009_gene841 2.2e-81 248.0 COG0546@1|root,COG0546@2|Bacteria,1V4W6@1239|Firmicutes,24DB6@186801|Clostridia,36VFQ@31979|Clostridiaceae 186801|Clostridia S IA, variant 1 - - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 HNDODLHM_00534 479437.Elen_2186 8.19e-76 242.0 COG2755@1|root,COG2755@2|Bacteria,2HUFA@201174|Actinobacteria,4CUEM@84998|Coriobacteriia 84998|Coriobacteriia E lipolytic protein G-D-S-L family - - - - - - - - - - - - - HNDODLHM_00535 1123313.ATUT01000031_gene1457 2.81e-185 536.0 COG1696@1|root,COG1696@2|Bacteria,1TP52@1239|Firmicutes,3VP7P@526524|Erysipelotrichia 526524|Erysipelotrichia M MBOAT, membrane-bound O-acyltransferase family - - - - - - - - - - - - MBOAT HNDODLHM_00536 883114.HMPREF9709_01432 2.64e-30 108.0 COG0236@1|root,COG0236@2|Bacteria,1VEX6@1239|Firmicutes,24QWP@186801|Clostridia 186801|Clostridia IQ Psort location Cytoplasmic, score - - - - - - - - - - - - PP-binding HNDODLHM_00537 883114.HMPREF9709_01433 8.82e-138 405.0 COG0019@1|root,COG0019@2|Bacteria,1TPE9@1239|Firmicutes,247X7@186801|Clostridia,22HZN@1570339|Peptoniphilaceae 186801|Clostridia E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine lysA - 4.1.1.20 ko:K01586 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R00451 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N,Orn_DAP_Arg_deC HNDODLHM_00538 883114.HMPREF9709_01434 1.43e-200 575.0 COG1020@1|root,COG1020@2|Bacteria,1TPTH@1239|Firmicutes,2490U@186801|Clostridia,22GKH@1570339|Peptoniphilaceae 186801|Clostridia Q AMP-binding enzyme - - 6.1.1.13 ko:K03367,ko:K04784 ko00473,ko01053,ko01503,ko02020,ko05150,map00473,map01053,map01503,map02020,map05150 M00725 R02718 RC00037,RC00094 ko00000,ko00001,ko00002,ko01000,ko01004,ko01008,ko01504 - - - AMP-binding,AMP-binding_C,Condensation,PP-binding HNDODLHM_00539 1151292.QEW_1398 1.21e-51 188.0 COG0642@1|root,COG2205@2|Bacteria,1UYC9@1239|Firmicutes,24CPQ@186801|Clostridia,25TFB@186804|Peptostreptococcaceae 186801|Clostridia T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HAMP,HATPase_c,HisKA HNDODLHM_00540 1392493.JIAB01000001_gene966 4.64e-77 239.0 COG0745@1|root,COG0745@2|Bacteria,1TR8K@1239|Firmicutes,24973@186801|Clostridia,27RQC@186928|unclassified Lachnospiraceae 186801|Clostridia T Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_00541 1160721.RBI_II00013 1.3e-73 224.0 2CAVT@1|root,304CC@2|Bacteria,1V4J6@1239|Firmicutes,24HQA@186801|Clostridia,3WK7E@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF2798 HNDODLHM_00542 1499685.CCFJ01000046_gene3155 7.49e-15 69.3 2DR1Y@1|root,339TZ@2|Bacteria,1VK7M@1239|Firmicutes,4HR6A@91061|Bacilli,1ZKCJ@1386|Bacillus 91061|Bacilli S Protein of unknown function (DUF3006) - - - - - - - - - - - - DUF3006 HNDODLHM_00543 1121423.JONT01000016_gene1171 7.64e-83 260.0 COG2333@1|root,COG2333@2|Bacteria,1TS9U@1239|Firmicutes,249VR@186801|Clostridia,2617G@186807|Peptococcaceae 186801|Clostridia S PFAM Metallo-beta-lactamase superfamily - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Ada_Zn_binding,LTD,Lactamase_B HNDODLHM_00544 622312.ROSEINA2194_02622 0.0 894.0 COG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,247Q0@186801|Clostridia 186801|Clostridia V ABC transporter - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran HNDODLHM_00545 622312.ROSEINA2194_02623 2.42e-266 747.0 COG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,247T8@186801|Clostridia 186801|Clostridia V Abc transporter - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran HNDODLHM_00546 1235798.C817_01204 3.68e-38 135.0 COG1846@1|root,COG1846@2|Bacteria,1VA2S@1239|Firmicutes,25CPK@186801|Clostridia 186801|Clostridia K MarR family - - - - - - - - - - - - MarR_2 HNDODLHM_00548 622312.ROSEINA2194_03846 1.73e-57 194.0 COG1295@1|root,COG1295@2|Bacteria,1U7HM@1239|Firmicutes,24A2Q@186801|Clostridia 186801|Clostridia H Belongs to the UPF0761 family yihY - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB HNDODLHM_00549 537013.CLOSTMETH_00229 2.91e-90 274.0 COG0300@1|root,COG0300@2|Bacteria,1UZHA@1239|Firmicutes,248C8@186801|Clostridia,3WHWH@541000|Ruminococcaceae 186801|Clostridia S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - ko:K07124 - - - - ko00000 - - - adh_short HNDODLHM_00550 903814.ELI_2646 8.34e-59 194.0 COG0500@1|root,COG4224@1|root,COG2226@2|Bacteria,COG4224@2|Bacteria,1V53X@1239|Firmicutes,24IQW@186801|Clostridia,25WQC@186806|Eubacteriaceae 186801|Clostridia Q O-methyltransferase - - - - - - - - - - - - DUF1653,Methyltransf_11,Methyltransf_25 HNDODLHM_00552 483218.BACPEC_01729 3.8e-98 286.0 COG3695@1|root,COG3695@2|Bacteria,1TPJI@1239|Firmicutes,249H6@186801|Clostridia,268M5@186813|unclassified Clostridiales 186801|Clostridia L 6-O-methylguanine DNA methyltransferase, DNA binding domain - - - - - - - - - - - - DNA_binding_1 HNDODLHM_00553 1469948.JPNB01000001_gene2100 4.72e-210 585.0 COG3943@1|root,COG3943@2|Bacteria,1TPH4@1239|Firmicutes,248NI@186801|Clostridia,36ERN@31979|Clostridiaceae 186801|Clostridia S Virulence protein RhuM family - - - - - - - - - - - - Virulence_RhuM HNDODLHM_00554 592026.GCWU0000282_002271 6.18e-66 204.0 COG0454@1|root,COG0454@2|Bacteria,1V78F@1239|Firmicutes,24PEE@186801|Clostridia 186801|Clostridia K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 HNDODLHM_00555 1120746.CCNL01000008_gene479 1.02e-183 527.0 COG2265@1|root,COG2265@2|Bacteria,2NNWX@2323|unclassified Bacteria 2|Bacteria J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family rumA - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr HNDODLHM_00556 428125.CLOLEP_01540 9.03e-225 632.0 COG0773@1|root,COG0773@2|Bacteria,1TQ5H@1239|Firmicutes,2484K@186801|Clostridia,3WGQ1@541000|Ruminococcaceae 186801|Clostridia M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M HNDODLHM_00558 428125.CLOLEP_03333 1.07e-70 216.0 COG0698@1|root,COG0698@2|Bacteria,1V3HE@1239|Firmicutes,24JWT@186801|Clostridia,3WJA1@541000|Ruminococcaceae 186801|Clostridia G Ribose 5-phosphate isomerase rpiB - 5.3.1.6 ko:K01808 ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01056,R09030 RC00376,RC00434 ko00000,ko00001,ko00002,ko01000 - - - LacAB_rpiB HNDODLHM_00559 428125.CLOLEP_03334 1.04e-75 236.0 COG1214@1|root,COG1214@2|Bacteria,1V4YX@1239|Firmicutes,24A0P@186801|Clostridia,3WJ9X@541000|Ruminococcaceae 186801|Clostridia O Universal bacterial protein YeaZ yeaZ - - ko:K14742 - - - - ko00000,ko03016 - - - Acetyltransf_1,Peptidase_M22 HNDODLHM_00560 1120746.CCNL01000013_gene1976 4.72e-61 191.0 COG0802@1|root,COG0802@2|Bacteria,2NPU4@2323|unclassified Bacteria 2|Bacteria S Threonylcarbamoyl adenosine biosynthesis protein TsaE yjeE - 2.7.1.221 ko:K06925,ko:K07102 ko00520,ko01100,map00520,map01100 - R08968,R11024 RC00002,RC00078 ko00000,ko00001,ko01000,ko03016 - - - TsaE HNDODLHM_00561 428125.CLOLEP_03336 1.74e-311 859.0 COG2759@1|root,COG2759@2|Bacteria,1TP6N@1239|Firmicutes,247P5@186801|Clostridia,3WHBU@541000|Ruminococcaceae 186801|Clostridia H Belongs to the formate--tetrahydrofolate ligase family fhs - 6.3.4.3 ko:K01938 ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200 M00140,M00377 R00943 RC00026,RC00111 ko00000,ko00001,ko00002,ko01000 - - - FTHFS HNDODLHM_00562 428125.CLOLEP_03338 2.31e-115 348.0 COG0772@1|root,COG0772@2|Bacteria,1TPGH@1239|Firmicutes,247WS@186801|Clostridia,3WJ15@541000|Ruminococcaceae 186801|Clostridia D Belongs to the SEDS family rodA - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE HNDODLHM_00563 1235790.C805_00433 1.24e-09 68.6 COG4856@1|root,COG4856@2|Bacteria,1TSIV@1239|Firmicutes,24GKC@186801|Clostridia,25W2Z@186806|Eubacteriaceae 186801|Clostridia S YbbR-like protein - - - - - - - - - - - - YbbR HNDODLHM_00564 428125.CLOLEP_03097 5.73e-81 253.0 COG1624@1|root,COG1624@2|Bacteria,1TPRW@1239|Firmicutes,249K8@186801|Clostridia,3WGY9@541000|Ruminococcaceae 186801|Clostridia S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria dacA - 2.7.7.85 ko:K18672 - - - - ko00000,ko01000 - - - DisA_N HNDODLHM_00565 428125.CLOLEP_03096 4.59e-135 398.0 COG0520@1|root,COG0520@2|Bacteria,1TQ1W@1239|Firmicutes,249CS@186801|Clostridia,3WH06@541000|Ruminococcaceae 186801|Clostridia E cysteine desulfurase family protein - - - - - - - - - - - - Aminotran_5 HNDODLHM_00567 1341157.RF007C_11190 8.72e-106 313.0 COG0289@1|root,COG0289@2|Bacteria,1TR9D@1239|Firmicutes,248FY@186801|Clostridia,3WH3Y@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate dapB - 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS17035 DapB_C,DapB_N HNDODLHM_00568 428125.CLOLEP_03140 1.3e-130 380.0 COG0329@1|root,COG0329@2|Bacteria,1TPCK@1239|Firmicutes,247T5@186801|Clostridia,3WGWA@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) dapA - 4.3.3.7 ko:K01714 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R10147 RC03062,RC03063 ko00000,ko00001,ko00002,ko01000 - - - DHDPS HNDODLHM_00569 428125.CLOLEP_03139 3.53e-201 563.0 COG0136@1|root,COG0136@2|Bacteria,1TPC6@1239|Firmicutes,248ZR@186801|Clostridia,3WGVU@541000|Ruminococcaceae 186801|Clostridia E Belongs to the aspartate-semialdehyde dehydrogenase family asd - 1.2.1.11 ko:K00133 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R02291 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC HNDODLHM_00570 1384065.JAGS01000001_gene602 1.15e-179 508.0 COG0809@1|root,COG0809@2|Bacteria,1TPKD@1239|Firmicutes,247NT@186801|Clostridia,3WGMR@541000|Ruminococcaceae 186801|Clostridia H Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA - 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth HNDODLHM_00571 1120746.CCNL01000011_gene1750 2.36e-214 598.0 COG0343@1|root,COG0343@2|Bacteria,2NNQS@2323|unclassified Bacteria 2|Bacteria J Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT HNDODLHM_00572 1120746.CCNL01000011_gene1749 3.16e-21 89.0 COG1862@1|root,COG1862@2|Bacteria 2|Bacteria U protein transport yajC GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031522,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - ko:K03210 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - YajC HNDODLHM_00574 553973.CLOHYLEM_07441 1.53e-14 81.3 COG1033@1|root,COG1033@2|Bacteria,1VHSF@1239|Firmicutes,24R7H@186801|Clostridia,2217G@1506553|Lachnoclostridium 186801|Clostridia P YARHG - - - - - - - - - - - - YARHG,zinc_ribbon_2 HNDODLHM_00575 622312.ROSEINA2194_02935 2.08e-206 572.0 28PUM@1|root,2ZCFI@2|Bacteria,1V1KX@1239|Firmicutes,24H7K@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00576 622312.ROSEINA2194_02936 0.0 894.0 COG5002@1|root,COG5002@2|Bacteria,1TQ1H@1239|Firmicutes,247VG@186801|Clostridia 186801|Clostridia T Histidine kinase - - 2.7.13.3 ko:K18345 ko01502,ko02020,map01502,map02020 M00651,M00656 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022 - - - HAMP,HATPase_c,HisKA HNDODLHM_00577 622312.ROSEINA2194_02937 4.85e-158 443.0 COG0745@1|root,COG0745@2|Bacteria,1U4FM@1239|Firmicutes,24DF2@186801|Clostridia 186801|Clostridia T Psort location Cytoplasmic, score - - - ko:K18344 ko01502,ko02020,map01502,map02020 M00651,M00656 - - ko00000,ko00001,ko00002,ko01504,ko02022 - - - Response_reg,Trans_reg_C HNDODLHM_00579 509191.AEDB02000087_gene2588 0.0 1398.0 COG1012@1|root,COG1454@1|root,COG1012@2|Bacteria,COG1454@2|Bacteria,1TPB4@1239|Firmicutes,247IQ@186801|Clostridia,3WHK1@541000|Ruminococcaceae 186801|Clostridia C belongs to the iron- containing alcohol dehydrogenase family adhE - 1.1.1.1,1.2.1.10 ko:K04072 ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220 - R00228,R00623,R00754,R01172,R04880,R05233,R05234,R06917,R06927 RC00004,RC00050,RC00088,RC00099,RC00116,RC00184,RC00649,RC01195 ko00000,ko00001,ko01000 - - - Aldedh,Fe-ADH HNDODLHM_00580 203119.Cthe_0424 2.09e-119 347.0 COG0510@1|root,COG0510@2|Bacteria,1TQW6@1239|Firmicutes,248A0@186801|Clostridia,3WGQI@541000|Ruminococcaceae 186801|Clostridia M Phosphotransferase enzyme family - - - - - - - - - - - - APH HNDODLHM_00581 1120746.CCNL01000011_gene1909 5.69e-63 221.0 COG0791@1|root,COG3409@1|root,COG0791@2|Bacteria,COG3409@2|Bacteria 2|Bacteria M Peptidoglycan-binding domain 1 protein ydhO - 3.4.14.13 ko:K20742,ko:K21471 - - - - ko00000,ko01000,ko01002,ko01011 - - - NLPC_P60,PG_binding_1,YkuD HNDODLHM_00582 515622.bpr_I0245 5.98e-51 191.0 COG2208@1|root,COG2208@2|Bacteria,1TQY5@1239|Firmicutes,249WB@186801|Clostridia,4BWYS@830|Butyrivibrio 186801|Clostridia KT Sigma factor PP2C-like phosphatases - - 3.1.3.3 ko:K07315 - - - - ko00000,ko01000,ko03021 - - - HAMP,SpoIIE,dCache_1 HNDODLHM_00583 641112.ACOK01000025_gene2768 9.29e-192 541.0 COG0037@1|root,COG0607@1|root,COG0037@2|Bacteria,COG0607@2|Bacteria,1TQ0Y@1239|Firmicutes,247RP@186801|Clostridia,3WGZH@541000|Ruminococcaceae 186801|Clostridia D Belongs to the TtcA family ttcA - - - - - - - - - - - ATP_bind_3,Rhodanese HNDODLHM_00585 428125.CLOLEP_03941 0.0 1956.0 COG0085@1|root,COG0085@2|Bacteria,1TP96@1239|Firmicutes,247J1@186801|Clostridia,3WH6H@541000|Ruminococcaceae 186801|Clostridia K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoB - 2.7.7.6 ko:K03043 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 HNDODLHM_00586 428125.CLOLEP_03943 0.0 1875.0 COG0086@1|root,COG0086@2|Bacteria,1TNYT@1239|Firmicutes,24925@186801|Clostridia,3WGVS@541000|Ruminococcaceae 186801|Clostridia K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC - 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 HNDODLHM_00587 1160721.RBI_I00132 9.52e-25 94.0 COG1396@1|root,COG1396@2|Bacteria,1VK84@1239|Firmicutes,252JX@186801|Clostridia,3WKI0@541000|Ruminococcaceae 186801|Clostridia K Helix-turn-helix - - - - - - - - - - - - HTH_3 HNDODLHM_00588 1105031.HMPREF1141_0112 1.21e-51 167.0 COG0816@1|root,COG0816@2|Bacteria,1V6ER@1239|Firmicutes,24JGP@186801|Clostridia,36IV4@31979|Clostridiaceae 186801|Clostridia J Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA yrrK - - ko:K07447 - - - - ko00000,ko01000 - - - RuvX HNDODLHM_00589 428125.CLOLEP_02533 1.2e-184 554.0 COG2208@1|root,COG2208@2|Bacteria,1TQ92@1239|Firmicutes,247XG@186801|Clostridia,3WH68@541000|Ruminococcaceae 186801|Clostridia KT stage II sporulation protein E spoIIE - 3.1.3.16 ko:K06382 - - - - ko00000,ko01000 - - - SpoIIE HNDODLHM_00591 1235797.C816_03924 7.73e-21 87.0 COG1476@1|root,COG1476@2|Bacteria,1VEKB@1239|Firmicutes,25F54@186801|Clostridia 186801|Clostridia K PFAM helix-turn-helix domain protein - - - - - - - - - - - - HTH_19,HTH_3 HNDODLHM_00592 1235799.C818_03247 2.58e-205 570.0 COG3177@1|root,COG3177@2|Bacteria,1V3AX@1239|Firmicutes,248VF@186801|Clostridia,27NE7@186928|unclassified Lachnospiraceae 186801|Clostridia S Fic/DOC family - - - - - - - - - - - - Fic HNDODLHM_00594 428125.CLOLEP_01062 5.44e-211 594.0 COG4198@1|root,COG4198@2|Bacteria,1TQSW@1239|Firmicutes,249E4@186801|Clostridia,3WK6T@541000|Ruminococcaceae 186801|Clostridia S Protein of unknown function (DUF1015) - - - - - - - - - - - - DUF1015 HNDODLHM_00595 858215.Thexy_0401 2.62e-38 134.0 COG3467@1|root,COG3467@2|Bacteria,1V7MR@1239|Firmicutes,25B09@186801|Clostridia,42I93@68295|Thermoanaerobacterales 186801|Clostridia S Pyridoxamine 5'-phosphate oxidase - - - ko:K07005 - - - - ko00000 - - - Pyridox_ox_2 HNDODLHM_00596 1410661.JNKW01000010_gene1026 5.25e-59 200.0 COG0252@1|root,COG0252@2|Bacteria 2|Bacteria EJ asparaginase activity - - 3.5.1.1 ko:K01424 ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110 - R00485 RC00010,RC02798 ko00000,ko00001,ko01000 - - - Asparaginase HNDODLHM_00597 1160721.RBI_II00514 8.14e-307 842.0 COG0493@1|root,COG0493@2|Bacteria,1TQ1A@1239|Firmicutes,2490X@186801|Clostridia,3WGBX@541000|Ruminococcaceae 186801|Clostridia C glutamate synthase gltD - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 HNDODLHM_00598 1160721.RBI_II00513 0.0 2652.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1TQ0B@1239|Firmicutes,248IB@186801|Clostridia,3WHE2@541000|Ruminococcaceae 186801|Clostridia E glutamate synthase gltB - 1.4.1.13,1.4.1.14,1.4.7.1 ko:K00265,ko:K00284 ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230 - R00021,R00093,R00114,R00248,R10086 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase HNDODLHM_00599 537013.CLOSTMETH_00827 0.0 986.0 COG3968@1|root,COG3968@2|Bacteria,1UHUF@1239|Firmicutes,2481B@186801|Clostridia,3WHCK@541000|Ruminococcaceae 186801|Clostridia S glutamine synthetase glnA - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - GSIII_N,Gln-synt_C HNDODLHM_00600 397287.C807_02916 2.33e-265 744.0 COG0004@1|root,COG0347@1|root,COG0004@2|Bacteria,COG0347@2|Bacteria,1TQYG@1239|Firmicutes,247W1@186801|Clostridia,27ITM@186928|unclassified Lachnospiraceae 186801|Clostridia EP Ammonium Transporter Family amt - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp,P-II HNDODLHM_00601 1121115.AXVN01000079_gene2739 9.59e-38 136.0 2C0W2@1|root,306ZY@2|Bacteria,1V5YY@1239|Firmicutes,24I0Q@186801|Clostridia 186801|Clostridia - - - - - ko:K07726 - - - - ko00000,ko03000 - - - HTH_3,HTH_7,MqsA_antitoxin HNDODLHM_00602 411467.BACCAP_04305 3.72e-90 275.0 2BYUU@1|root,2Z7P3@2|Bacteria,1UYDK@1239|Firmicutes,249UN@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00603 1120746.CCNL01000017_gene2653 4.16e-175 595.0 COG3209@1|root,COG3209@2|Bacteria,2NQN8@2323|unclassified Bacteria 2|Bacteria M COG3209 Rhs family protein wapA GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0004549,GO:0006139,GO:0006399,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016078,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901575 - - - - - - - - - - PT-HINT,RHS_repeat HNDODLHM_00606 483218.BACPEC_01733 5.97e-119 352.0 COG0358@1|root,COG0358@2|Bacteria,1TSIU@1239|Firmicutes,2495Y@186801|Clostridia,26958@186813|unclassified Clostridiales 186801|Clostridia L Protein of unknown function (DUF3991) - - - - - - - - - - - - DUF3991,Toprim_2 HNDODLHM_00607 469596.HMPREF9488_02222 6.55e-19 83.2 COG4734@1|root,COG4734@2|Bacteria,1VCY1@1239|Firmicutes 1239|Firmicutes S Domain of unknown function (DUF3846) - - - - - - - - - - - - DUF3846 HNDODLHM_00608 469596.HMPREF9488_02224 4.94e-31 113.0 2CDK1@1|root,32G0D@2|Bacteria,1V6YH@1239|Firmicutes,3VTJT@526524|Erysipelotrichia 526524|Erysipelotrichia S Bacterial mobilisation protein (MobC) - - - - - - - - - - - - MobC HNDODLHM_00609 469596.HMPREF9488_02225 1.26e-138 412.0 COG3843@1|root,COG3843@2|Bacteria,1TPRX@1239|Firmicutes,3VSZ6@526524|Erysipelotrichia 526524|Erysipelotrichia U Relaxase/Mobilisation nuclease domain - - - - - - - - - - - - Relaxase HNDODLHM_00610 469596.HMPREF9488_02226 1.15e-69 221.0 295P2@1|root,2ZT0F@2|Bacteria,1TT96@1239|Firmicutes,3VR6M@526524|Erysipelotrichia 526524|Erysipelotrichia S Protein of unknown function (DUF3801) - - - - - - - - - - - - DUF3801 HNDODLHM_00611 469596.HMPREF9488_02227 3.1e-85 264.0 COG4227@1|root,COG4227@2|Bacteria,1V3C4@1239|Firmicutes,3VUM7@526524|Erysipelotrichia 526524|Erysipelotrichia L nucleotidyltransferase activity - - - - - - - - - - - - - HNDODLHM_00612 742738.HMPREF9460_04199 6.15e-18 76.6 2ENF6@1|root,33G2N@2|Bacteria,1VND9@1239|Firmicutes,25D5Q@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00613 469596.HMPREF9488_02229 1.93e-303 842.0 COG3505@1|root,COG3505@2|Bacteria,1TPCF@1239|Firmicutes,3VP0A@526524|Erysipelotrichia 526524|Erysipelotrichia U Psort location Cytoplasmic, score - - - - - - - - - - - - T4SS-DNA_transf,TraG-D_C HNDODLHM_00614 1507.HMPREF0262_02435 9.51e-41 138.0 2DMPF@1|root,32SVU@2|Bacteria,1VA0M@1239|Firmicutes,24JF3@186801|Clostridia,36M0S@31979|Clostridiaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_00615 1499683.CCFF01000017_gene1562 2.31e-34 119.0 COG0640@1|root,COG0640@2|Bacteria,1VA3M@1239|Firmicutes,24NEC@186801|Clostridia,36KQM@31979|Clostridiaceae 186801|Clostridia K transcriptional regulator - - - - - - - - - - - - HTH_20,HTH_5 HNDODLHM_00616 511680.BUTYVIB_01772 1.76e-29 117.0 COG5658@1|root,COG5658@2|Bacteria,1VBIT@1239|Firmicutes,24PFZ@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF1648,SdpI HNDODLHM_00617 1160721.RBI_I00794 5.95e-317 885.0 COG2217@1|root,COG2217@2|Bacteria,1TPB8@1239|Firmicutes,247RZ@186801|Clostridia,3WHGR@541000|Ruminococcaceae 186801|Clostridia P Psort location CytoplasmicMembrane, score copA_1 - - ko:K12950 - - - - ko00000,ko01000 3.A.3.32 - - E1-E2_ATPase,Hydrolase HNDODLHM_00618 1160721.RBI_I00795 1.07e-33 117.0 2EGCF@1|root,33A48@2|Bacteria,1TV0R@1239|Firmicutes,2586M@186801|Clostridia,3WM1Y@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00619 1232453.BAIF02000102_gene3647 1.06e-121 354.0 COG0428@1|root,COG0428@2|Bacteria,1TP7J@1239|Firmicutes,247Q2@186801|Clostridia,268BU@186813|unclassified Clostridiales 186801|Clostridia P ZIP Zinc transporter - - - ko:K07238 - - - - ko00000,ko02000 2.A.5.5 - - Zip HNDODLHM_00620 1131462.DCF50_p716 4.68e-113 383.0 COG0419@1|root,COG0419@2|Bacteria,1TPCS@1239|Firmicutes,24A22@186801|Clostridia,260UM@186807|Peptococcaceae 186801|Clostridia L Putative exonuclease SbcCD, C subunit sbcC - - ko:K03546 - - - - ko00000,ko03400 - - - AAA_23,AAA_29,SbcCD_C HNDODLHM_00621 411474.COPEUT_00675 1.04e-102 316.0 COG0420@1|root,COG0420@2|Bacteria,1TQY6@1239|Firmicutes,248VE@186801|Clostridia 186801|Clostridia L SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity sbcD - - ko:K03547 - - - - ko00000,ko03400 - - - Metallophos,SbcD_C HNDODLHM_00622 657322.FPR_30870 1.65e-38 131.0 2CCD5@1|root,32RVD@2|Bacteria,1UPQI@1239|Firmicutes,25HM0@186801|Clostridia,3WREV@541000|Ruminococcaceae 186801|Clostridia S Branched-chain amino acid transport protein (AzlD) - - - - - - - - - - - - AzlD HNDODLHM_00623 1121423.JONT01000011_gene178 2.29e-104 309.0 COG1296@1|root,COG1296@2|Bacteria,1TSXD@1239|Firmicutes,24CRN@186801|Clostridia,2650R@186807|Peptococcaceae 186801|Clostridia E branched-chain amino acid permease (Azaleucine resistance) - - - - - - - - - - - - AzlC HNDODLHM_00624 394503.Ccel_2580 9.26e-17 73.2 2EGE3@1|root,33A60@2|Bacteria,1VMF7@1239|Firmicutes,24UMV@186801|Clostridia,36PXP@31979|Clostridiaceae 186801|Clostridia S Psort location - - - - - - - - - - - - - HNDODLHM_00625 411489.CLOL250_01350 1.96e-66 209.0 COG1611@1|root,COG1611@2|Bacteria,1UKED@1239|Firmicutes,24DSN@186801|Clostridia,36GYE@31979|Clostridiaceae 186801|Clostridia S Belongs to the LOG family yvdD - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - Lysine_decarbox HNDODLHM_00626 1415774.U728_1168 5.42e-118 360.0 COG0534@1|root,COG0534@2|Bacteria,1TQMT@1239|Firmicutes,249WJ@186801|Clostridia,36FU2@31979|Clostridiaceae 186801|Clostridia V Mate efflux family protein - - - ko:K03327 - - - - ko00000,ko02000 2.A.66.1 - - MatE HNDODLHM_00627 1226325.HMPREF1548_02209 2.21e-83 258.0 2DKY4@1|root,30URY@2|Bacteria,1V2IU@1239|Firmicutes,25G8U@186801|Clostridia,36U8A@31979|Clostridiaceae 186801|Clostridia H Psort location Cytoplasmic, score 7.50 - - - - - - - - - - - - DUF4037,NTP_transf_2 HNDODLHM_00628 1120746.CCNL01000017_gene3268 3.89e-89 275.0 COG0196@1|root,COG0196@2|Bacteria,2NPCV@2323|unclassified Bacteria 2|Bacteria H Belongs to the ribF family ribF - 2.7.1.26,2.7.7.2 ko:K11753 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00161,R00549 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - FAD_syn,Flavokinase HNDODLHM_00629 428125.CLOLEP_01760 1.72e-85 256.0 COG0494@1|root,COG0494@2|Bacteria,1V6F5@1239|Firmicutes,24JFS@186801|Clostridia,3WJNN@541000|Ruminococcaceae 186801|Clostridia L Psort location Cytoplasmic, score nudF - 3.6.1.13 ko:K01515 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000 - - - NUDIX HNDODLHM_00630 428125.CLOLEP_01759 1.09e-104 314.0 COG2866@1|root,COG2866@2|Bacteria,1TP3K@1239|Firmicutes,249MT@186801|Clostridia,3WHJW@541000|Ruminococcaceae 186801|Clostridia EM Carboxypeptidase - - 3.4.19.11 ko:K01308 - - - - ko00000,ko01000,ko01002 - - - LysM,PG_binding_1,Peptidase_M14 HNDODLHM_00631 428125.CLOLEP_03720 0.0 979.0 COG0367@1|root,COG0367@2|Bacteria,1TRPB@1239|Firmicutes,247YA@186801|Clostridia,3WGJR@541000|Ruminococcaceae 186801|Clostridia E Asparagine synthase asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 HNDODLHM_00632 720554.Clocl_0750 8.4e-53 171.0 COG1433@1|root,COG1433@2|Bacteria,1V7KS@1239|Firmicutes,24J98@186801|Clostridia,3WJY6@541000|Ruminococcaceae 186801|Clostridia S TIGRFAM C_GCAxxG_C_C family - - - - - - - - - - - - C_GCAxxG_C_C HNDODLHM_00633 428125.CLOLEP_01451 0.0 988.0 COG0481@1|root,COG0481@2|Bacteria,1TP0G@1239|Firmicutes,247V8@186801|Clostridia,3WGRU@541000|Ruminococcaceae 186801|Clostridia M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner lepA - - ko:K03596 ko05134,map05134 - - - ko00000,ko00001 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C HNDODLHM_00634 658088.HMPREF0987_00851 1.17e-27 105.0 2DSCR@1|root,33FK0@2|Bacteria,1VKCD@1239|Firmicutes,24QWS@186801|Clostridia,27NWD@186928|unclassified Lachnospiraceae 186801|Clostridia S Domain of unknown function (DUF3783) - - - - - - - - - - - - DUF3783 HNDODLHM_00635 471875.RUMLAC_02584 8.86e-42 152.0 COG0561@1|root,COG0561@2|Bacteria,1U3W2@1239|Firmicutes,2486H@186801|Clostridia,3WJGV@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - Hydrolase_3 HNDODLHM_00636 1121334.KB911069_gene1473 7.16e-100 295.0 COG0177@1|root,COG0177@2|Bacteria,1TRAK@1239|Firmicutes,24899@186801|Clostridia,3WGWR@541000|Ruminococcaceae 186801|Clostridia L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate nth - 4.2.99.18 ko:K10773 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD HNDODLHM_00637 999411.HMPREF1092_01739 3.33e-78 242.0 COG1011@1|root,COG1011@2|Bacteria,1UIG9@1239|Firmicutes,25EMR@186801|Clostridia,36G1V@31979|Clostridiaceae 186801|Clostridia S HAD-hyrolase-like - - - ko:K07025 - - - - ko00000 - - - HAD_2 HNDODLHM_00638 411474.COPEUT_01923 3.13e-52 169.0 28KJ2@1|root,2ZA47@2|Bacteria,1TSHV@1239|Firmicutes,24CS7@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_00641 500632.CLONEX_01175 1.37e-187 523.0 COG0191@1|root,COG0191@2|Bacteria,1TQ01@1239|Firmicutes,248B7@186801|Clostridia 186801|Clostridia G Fructose-1,6-bisphosphate aldolase, class II fba - 4.1.2.13 ko:K01624 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003,M00165,M00167,M00344,M00345 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000 - - - F_bP_aldolase HNDODLHM_00642 397287.C807_02623 4.62e-53 174.0 COG1268@1|root,COG1268@2|Bacteria,1VAY6@1239|Firmicutes,24HPU@186801|Clostridia,27NIJ@186928|unclassified Lachnospiraceae 186801|Clostridia S BioY family bioY - - ko:K03523 ko02010,map02010 M00581,M00582 - - ko00000,ko00001,ko00002,ko02000 2.A.88.1,2.A.88.2 - - BioY HNDODLHM_00644 428125.CLOLEP_03718 2.28e-180 526.0 COG0772@1|root,COG0772@2|Bacteria,1TQ82@1239|Firmicutes,248QS@186801|Clostridia,3WI08@541000|Ruminococcaceae 186801|Clostridia D Belongs to the SEDS family ftsW - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FHA,FTSW_RODA_SPOVE HNDODLHM_00645 1120746.CCNL01000008_gene473 5.44e-151 444.0 COG0768@1|root,COG0768@2|Bacteria 2|Bacteria M penicillin binding - - - ko:K05364 ko00550,map00550 - R04519 RC00005,RC00049 ko00000,ko00001,ko01011 - - - Transpeptidase HNDODLHM_00646 428125.CLOLEP_00213 0.0 1325.0 COG0653@1|root,COG0653@2|Bacteria,1TPEY@1239|Firmicutes,247N2@186801|Clostridia,3WGPN@541000|Ruminococcaceae 186801|Clostridia U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA - - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - Helicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW HNDODLHM_00648 1120746.CCNL01000017_gene2986 1.26e-59 185.0 COG0203@1|root,COG0203@2|Bacteria,2NPYQ@2323|unclassified Bacteria 2|Bacteria J Ribosomal protein L17 rplQ GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02879,ko:K16193 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L17 HNDODLHM_00649 428125.CLOLEP_01007 6.18e-185 519.0 COG0202@1|root,COG0202@2|Bacteria,1TPR8@1239|Firmicutes,248DS@186801|Clostridia,3WGUM@541000|Ruminococcaceae 186801|Clostridia K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoA - 2.7.7.6 ko:K03040 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L HNDODLHM_00650 742738.HMPREF9460_02000 1.2e-101 298.0 COG0522@1|root,COG0522@2|Bacteria,1TR0J@1239|Firmicutes,248Y5@186801|Clostridia,267UN@186813|unclassified Clostridiales 186801|Clostridia J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit rpsD - - ko:K02986 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S4,S4 HNDODLHM_00651 428125.CLOLEP_01009 3.7e-73 221.0 COG0100@1|root,COG0100@2|Bacteria,1V3IK@1239|Firmicutes,24HIK@186801|Clostridia,3WIYT@541000|Ruminococcaceae 186801|Clostridia J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome rpsK - - ko:K02948 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S11 HNDODLHM_00652 428125.CLOLEP_01010 3.22e-73 220.0 COG0099@1|root,COG0099@2|Bacteria,1V3JH@1239|Firmicutes,24HCT@186801|Clostridia,3WJ08@541000|Ruminococcaceae 186801|Clostridia J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits rpsM - - ko:K02952 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S13 HNDODLHM_00653 888062.HMPREF9083_0929 5.8e-18 74.7 COG0257@1|root,COG0257@2|Bacteria,1VK4F@1239|Firmicutes,4H629@909932|Negativicutes 909932|Negativicutes J Belongs to the bacterial ribosomal protein bL36 family rpmJ - - ko:K02919 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L36 HNDODLHM_00654 428125.CLOLEP_01012 1.32e-38 129.0 COG0361@1|root,COG0361@2|Bacteria,1V9ZK@1239|Firmicutes,24MQE@186801|Clostridia,3WK1D@541000|Ruminococcaceae 186801|Clostridia J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex infA - - ko:K02518 - - - - ko00000,ko03012 - - - eIF-1a HNDODLHM_00655 641112.ACOK01000089_gene1239 4.03e-16 73.2 COG2163@1|root,COG2163@2|Bacteria,1VEPA@1239|Firmicutes,24UP0@186801|Clostridia,3WMRS@541000|Ruminococcaceae 186801|Clostridia J COG2163 Ribosomal protein L14E L6E L27E - - - - - - - - - - - - - HNDODLHM_00656 428125.CLOLEP_01014 1.61e-140 401.0 COG0024@1|root,COG0024@2|Bacteria,1TQC1@1239|Firmicutes,248I8@186801|Clostridia,3WGEW@541000|Ruminococcaceae 186801|Clostridia E Methionine aminopeptidase map - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 HNDODLHM_00657 1120746.CCNL01000017_gene2994 7.47e-110 320.0 COG0563@1|root,COG0563@2|Bacteria,2NPBU@2323|unclassified Bacteria 2|Bacteria F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism adk GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004017,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006412,GO:0006518,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0010467,GO:0015949,GO:0015950,GO:0015951,GO:0016070,GO:0016208,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.3 ko:K00939 ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130 M00049 R00127,R01547,R11319 RC00002 ko00000,ko00001,ko00002,ko01000,ko04147 - - iECH74115_1262.ECH74115_0566,iEKO11_1354.EKO11_3373,iG2583_1286.G2583_0586,iJN746.PP_1506 ADK,ADK_lid HNDODLHM_00658 1105031.HMPREF1141_0328 1.71e-208 588.0 COG0201@1|root,COG0201@2|Bacteria,1TPHB@1239|Firmicutes,248T9@186801|Clostridia,36F8Y@31979|Clostridiaceae 186801|Clostridia U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently secY - - ko:K03076 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5 - - SecY HNDODLHM_00659 428125.CLOLEP_01017 8.83e-69 211.0 COG0200@1|root,COG0200@2|Bacteria,1V3KE@1239|Firmicutes,24HAJ@186801|Clostridia,3WIV7@541000|Ruminococcaceae 186801|Clostridia J Binds to the 23S rRNA rplO - - ko:K02876 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27A HNDODLHM_00660 537013.CLOSTMETH_00170 1.43e-24 92.8 COG1841@1|root,COG1841@2|Bacteria,1UG5U@1239|Firmicutes,24RUS@186801|Clostridia,3WKJT@541000|Ruminococcaceae 186801|Clostridia J ribosomal protein rpmD - - ko:K02907 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L30 HNDODLHM_00661 1105031.HMPREF1141_0331 1.6e-89 265.0 COG0098@1|root,COG0098@2|Bacteria,1V1B1@1239|Firmicutes,24G5D@186801|Clostridia,36DG4@31979|Clostridiaceae 186801|Clostridia J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body rpsE - - ko:K02988 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S5,Ribosomal_S5_C HNDODLHM_00662 1105031.HMPREF1141_0332 1.46e-54 173.0 COG0256@1|root,COG0256@2|Bacteria,1V6DM@1239|Firmicutes,24JCS@186801|Clostridia,36JQ0@31979|Clostridiaceae 186801|Clostridia J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance rplR - - ko:K02881 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L18p HNDODLHM_00663 428125.CLOLEP_01021 1.26e-96 284.0 COG0097@1|root,COG0097@2|Bacteria,1V1FC@1239|Firmicutes,2496R@186801|Clostridia,3WIFT@541000|Ruminococcaceae 186801|Clostridia J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center rplF - - ko:K02933 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L6 HNDODLHM_00664 1105031.HMPREF1141_0334 2.09e-76 229.0 COG0096@1|root,COG0096@2|Bacteria,1V3KK@1239|Firmicutes,24HCP@186801|Clostridia,36I6W@31979|Clostridiaceae 186801|Clostridia J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit rpsH - - ko:K02994 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S8 HNDODLHM_00665 1121115.AXVN01000046_gene2971 1.14e-36 123.0 COG0199@1|root,COG0199@2|Bacteria,1VEF6@1239|Firmicutes,24QR1@186801|Clostridia,3Y0DU@572511|Blautia 186801|Clostridia J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site rpsN - - ko:K02954 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S14 HNDODLHM_00666 428125.CLOLEP_01024 1.09e-112 325.0 COG0094@1|root,COG0094@2|Bacteria,1TPE0@1239|Firmicutes,247X0@186801|Clostridia,3WGYQ@541000|Ruminococcaceae 186801|Clostridia J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits rplE - - ko:K02931 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L5,Ribosomal_L5_C HNDODLHM_00667 428125.CLOLEP_01025 4.2e-59 183.0 COG0198@1|root,COG0198@2|Bacteria,1V9ZQ@1239|Firmicutes,24MY0@186801|Clostridia,3WJBH@541000|Ruminococcaceae 186801|Clostridia J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit rplX - - ko:K02895 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KOW,ribosomal_L24 HNDODLHM_00668 428125.CLOLEP_01026 4.07e-76 228.0 COG0093@1|root,COG0093@2|Bacteria,1V3N0@1239|Firmicutes,24H98@186801|Clostridia,3WITX@541000|Ruminococcaceae 186801|Clostridia J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome rplN - - ko:K02874 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L14 HNDODLHM_00669 1042156.CXIVA_17980 4.98e-44 144.0 COG0186@1|root,COG0186@2|Bacteria,1V9YC@1239|Firmicutes,24MSW@186801|Clostridia,36KIV@31979|Clostridiaceae 186801|Clostridia J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA rpsQ - - ko:K02961 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S17 HNDODLHM_00670 428125.CLOLEP_01028 3.34e-23 90.1 COG0255@1|root,COG0255@2|Bacteria,1VEME@1239|Firmicutes,24QV1@186801|Clostridia,3WKVV@541000|Ruminococcaceae 186801|Clostridia J Belongs to the universal ribosomal protein uL29 family rpmC - - ko:K02904 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L29 HNDODLHM_00671 428125.CLOLEP_01029 1.13e-86 256.0 COG0197@1|root,COG0197@2|Bacteria,1V1AY@1239|Firmicutes,24FQX@186801|Clostridia,3WIIZ@541000|Ruminococcaceae 186801|Clostridia J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs rplP - - ko:K02878 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L16 HNDODLHM_00672 428125.CLOLEP_01030 7.8e-123 354.0 COG0092@1|root,COG0092@2|Bacteria,1TPCP@1239|Firmicutes,24833@186801|Clostridia,3WGIF@541000|Ruminococcaceae 186801|Clostridia J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation rpsC - - ko:K02982 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KH_2,Ribosomal_S3_C HNDODLHM_00673 428125.CLOLEP_01031 2.1e-53 169.0 COG0091@1|root,COG0091@2|Bacteria,1V6PU@1239|Firmicutes,24JF4@186801|Clostridia,3WJ9K@541000|Ruminococcaceae 186801|Clostridia J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome rplV - - ko:K02890 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L22 HNDODLHM_00674 1410617.JHXH01000003_gene549 9.8e-56 174.0 COG0185@1|root,COG0185@2|Bacteria,1V6CX@1239|Firmicutes,24JN3@186801|Clostridia,3WJ9F@541000|Ruminococcaceae 186801|Clostridia J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA rpsS - - ko:K02965 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S19 HNDODLHM_00675 428125.CLOLEP_01033 6.52e-168 472.0 COG0090@1|root,COG0090@2|Bacteria,1TP9X@1239|Firmicutes,247XY@186801|Clostridia,3WGQK@541000|Ruminococcaceae 186801|Clostridia J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity rplB - - ko:K02886 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L2,Ribosomal_L2_C HNDODLHM_00676 428125.CLOLEP_01034 5.15e-40 134.0 COG0089@1|root,COG0089@2|Bacteria,1VA4W@1239|Firmicutes,24MN8@186801|Clostridia,3WJVK@541000|Ruminococcaceae 186801|Clostridia J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome rplW - - ko:K02892 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L23 HNDODLHM_00677 428125.CLOLEP_01035 3.25e-114 331.0 COG0088@1|root,COG0088@2|Bacteria,1TPGW@1239|Firmicutes,248SY@186801|Clostridia,3WGQT@541000|Ruminococcaceae 186801|Clostridia J Forms part of the polypeptide exit tunnel rplD - - ko:K02926 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L4 HNDODLHM_00678 428125.CLOLEP_01036 2.11e-116 337.0 COG0087@1|root,COG0087@2|Bacteria,1TPFT@1239|Firmicutes,247NH@186801|Clostridia,3WHH0@541000|Ruminococcaceae 186801|Clostridia J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit rplC - - ko:K02906 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L3 HNDODLHM_00679 1105031.HMPREF1141_0349 1.27e-61 189.0 COG0051@1|root,COG0051@2|Bacteria,1V6C9@1239|Firmicutes,24JDC@186801|Clostridia,36JJY@31979|Clostridiaceae 186801|Clostridia J Involved in the binding of tRNA to the ribosomes rpsJ - - ko:K02946 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S10 HNDODLHM_00680 936596.HMPREF1495_2603 1.66e-50 167.0 COG2109@1|root,COG2109@2|Bacteria,1V70U@1239|Firmicutes,24JNB@186801|Clostridia,1HVMI@1164882|Lachnoanaerobaculum 186801|Clostridia H ATP:corrinoid adenosyltransferase BtuR/CobO/CobP btuR - 2.5.1.17 ko:K19221 ko00860,ko01100,map00860,map01100 M00122 R01492,R05220,R07268 RC00533 ko00000,ko00001,ko00002,ko01000 - - - CobA_CobO_BtuR HNDODLHM_00681 1408437.JNJN01000003_gene1583 4.11e-72 237.0 28IAA@1|root,2Z8CW@2|Bacteria,1TQHP@1239|Firmicutes,248TG@186801|Clostridia,25WPI@186806|Eubacteriaceae 186801|Clostridia S DHHW protein - - - - - - - - - - - - DHHW HNDODLHM_00682 742738.HMPREF9460_00707 1.1e-171 497.0 COG1696@1|root,COG1696@2|Bacteria,1TP52@1239|Firmicutes,248V4@186801|Clostridia,268JH@186813|unclassified Clostridiales 186801|Clostridia M MBOAT, membrane-bound O-acyltransferase family algI - - ko:K19294 - - - - ko00000 - - - MBOAT HNDODLHM_00684 1514668.JOOA01000002_gene968 3.12e-155 442.0 COG0379@1|root,COG0379@2|Bacteria,1TP6R@1239|Firmicutes,247IJ@186801|Clostridia,3WGEP@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate nadA - 2.5.1.72 ko:K03517 ko00760,ko01100,map00760,map01100 M00115 R04292 RC01119 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS12020 NadA HNDODLHM_00685 457412.RSAG_02353 2.18e-166 475.0 COG0482@1|root,COG0482@2|Bacteria,1TPIZ@1239|Firmicutes,247YV@186801|Clostridia,3WGZU@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 mnmA - 2.8.1.13 ko:K00566 ko04122,map04122 - R08700 RC02313,RC02315 ko00000,ko00001,ko01000,ko03016 - - - tRNA_Me_trans HNDODLHM_00686 1499683.CCFF01000014_gene3594 8.64e-180 552.0 COG1523@1|root,COG1523@2|Bacteria,1TP3M@1239|Firmicutes,2481P@186801|Clostridia,36E5I@31979|Clostridiaceae 186801|Clostridia G Belongs to the glycosyl hydrolase 13 family pulA - 3.2.1.41 ko:K01200 ko00500,ko01100,ko01110,map00500,map01100,map01110 - R02111 - ko00000,ko00001,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48 HNDODLHM_00687 873448.STRPO_0761 9.03e-113 332.0 COG3694@1|root,COG3694@2|Bacteria,1US4C@1239|Firmicutes,4IRS2@91061|Bacilli 91061|Bacilli S ABC-2 family transporter protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_6 HNDODLHM_00688 744872.Spica_2134 4.91e-83 257.0 COG4587@1|root,COG4587@2|Bacteria 2|Bacteria S transport system, permease component - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_6 HNDODLHM_00689 1215915.BN193_07375 5.71e-152 437.0 COG4586@1|root,COG4586@2|Bacteria,1TP1N@1239|Firmicutes,4H9NR@91061|Bacilli 91061|Bacilli S abc transporter atp-binding protein - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_00690 556261.HMPREF0240_00689 5.27e-39 151.0 COG4990@1|root,COG4990@2|Bacteria,1V6EZ@1239|Firmicutes,24IBA@186801|Clostridia,36JXE@31979|Clostridiaceae 186801|Clostridia S Peptidase_C39 like family - - - - - - - - - - - - Peptidase_C39_2 HNDODLHM_00691 698961.CGSMWGv6119V5_01713 5.86e-41 136.0 COG3041@1|root,COG3041@2|Bacteria,2GT66@201174|Actinobacteria,4D1DI@85004|Bifidobacteriales 201174|Actinobacteria S ParE toxin of type II toxin-antitoxin system, parDE - - - ko:K19157 - - - - ko00000,ko01000,ko02048 - - - YafQ_toxin HNDODLHM_00692 1282887.AUJG01000001_gene1581 2.39e-17 76.3 COG3077@1|root,COG3077@2|Bacteria,1VJC4@1239|Firmicutes 1239|Firmicutes L RelB antitoxin - - - ko:K07473 - - - - ko00000,ko02048 - - - RelB HNDODLHM_00693 665956.HMPREF1032_02548 2.26e-102 306.0 COG1373@1|root,COG1373@2|Bacteria,1TPFF@1239|Firmicutes,24A52@186801|Clostridia,3WH6C@541000|Ruminococcaceae 186801|Clostridia S Domain of unknown function (DUF4143) - - - ko:K07133 - - - - ko00000 - - - AAA_14,DUF4143 HNDODLHM_00694 1105031.HMPREF1141_1725 6.49e-104 318.0 COG0707@1|root,COG0707@2|Bacteria,1UQ6A@1239|Firmicutes,248FR@186801|Clostridia,36F7T@31979|Clostridiaceae 186801|Clostridia M Monogalactosyldiacylglycerol synthase - - 2.4.1.315 ko:K03429 ko00561,ko01100,map00561,map01100 - R02689,R04377 RC00005,RC00059 ko00000,ko00001,ko01000,ko01003 - GT28 - Glyco_tran_28_C,MGDG_synth HNDODLHM_00695 509191.AEDB02000042_gene4898 3.09e-21 103.0 COG4826@1|root,COG4826@2|Bacteria,1UYKX@1239|Firmicutes,24B76@186801|Clostridia,3WGCD@541000|Ruminococcaceae 186801|Clostridia O Belongs to the serpin family - - - ko:K13963 ko05146,map05146 - - - ko00000,ko00001 - - - Dockerin_1,Serpin HNDODLHM_00696 428125.CLOLEP_01561 1.38e-279 772.0 COG0008@1|root,COG0008@2|Bacteria,1TPJC@1239|Firmicutes,2482P@186801|Clostridia,3WGJQ@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) gltX - 6.1.1.17,6.1.1.24 ko:K01885,ko:K09698 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R03651,R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c HNDODLHM_00697 1120746.CCNL01000011_gene1544 0.0 927.0 COG0008@1|root,COG0008@2|Bacteria,2NNRW@2323|unclassified Bacteria 2|Bacteria J tRNA synthetases class I (E and Q), anti-codon binding domain glnS GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.18 ko:K01886 ko00970,ko01100,map00970,map01100 M00359,M00360 R03652 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - iECIAI39_1322.ECIAI39_0637 tRNA-synt_1c,tRNA-synt_1c_C HNDODLHM_00698 1121334.KB911067_gene286 2.19e-93 281.0 COG1028@1|root,COG1028@2|Bacteria,1TZY6@1239|Firmicutes,248QZ@186801|Clostridia,3WIP8@541000|Ruminococcaceae 186801|Clostridia IQ Oxidoreductase, short chain dehydrogenase reductase family protein fabG5 - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short,adh_short_C2 HNDODLHM_00699 1121334.KB911077_gene2436 2.49e-206 587.0 COG0769@1|root,COG0769@2|Bacteria,1TPQE@1239|Firmicutes,248Q4@186801|Clostridia,3WHE3@541000|Ruminococcaceae 186801|Clostridia M acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan murE - 6.3.2.13 ko:K01928 ko00300,ko00550,map00300,map00550 - R02788 RC00064,RC00090 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M HNDODLHM_00700 318464.IO99_07545 9.72e-78 243.0 2DVCQ@1|root,33VB5@2|Bacteria,1UHM6@1239|Firmicutes,25E25@186801|Clostridia,36J3V@31979|Clostridiaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00701 33035.JPJF01000003_gene1882 1.41e-56 186.0 COG1309@1|root,COG1309@2|Bacteria,1TWE4@1239|Firmicutes,24C3H@186801|Clostridia,3Y1JV@572511|Blautia 186801|Clostridia K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N HNDODLHM_00702 931276.Cspa_c33450 1.27e-11 75.1 COG2211@1|root,COG2211@2|Bacteria,1TRYR@1239|Firmicutes,25C8G@186801|Clostridia,36WRI@31979|Clostridiaceae 186801|Clostridia G PFAM Major Facilitator Superfamily - - - ko:K03292 - - - - ko00000 2.A.2 - - MFS_2 HNDODLHM_00703 1408416.JNJT01000011_gene623 1.15e-20 98.2 COG1476@1|root,COG1476@2|Bacteria 2|Bacteria K sequence-specific DNA binding - - - ko:K07110 - - - - ko00000,ko03000 - - - HTH_3,TPR_19 HNDODLHM_00704 411474.COPEUT_02494 4.64e-140 398.0 COG1305@1|root,COG1305@2|Bacteria,1TS2V@1239|Firmicutes,24AFU@186801|Clostridia 186801|Clostridia E Transglutaminase-like superfamily - - - - - - - - - - - - Transglut_core HNDODLHM_00705 1410624.JNKK01000024_gene1272 7.82e-115 341.0 COG1045@1|root,COG1045@2|Bacteria,1TR42@1239|Firmicutes,249SF@186801|Clostridia,27K96@186928|unclassified Lachnospiraceae 186801|Clostridia E Bacterial transferase hexapeptide (six repeats) cysE - 2.3.1.30 ko:K00640 ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111 M00021 R00586 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,SATase_N HNDODLHM_00706 537013.CLOSTMETH_00694 6.65e-62 197.0 COG0424@1|root,COG0424@2|Bacteria,1V6FH@1239|Firmicutes,24JRN@186801|Clostridia,3WJIZ@541000|Ruminococcaceae 186801|Clostridia D Maf-like protein maf - - ko:K06287 - - - - ko00000 - - - Maf HNDODLHM_00707 411463.EUBVEN_00590 8.73e-144 423.0 COG0523@1|root,COG0523@2|Bacteria,1TPCG@1239|Firmicutes,248XD@186801|Clostridia,25VUJ@186806|Eubacteriaceae 186801|Clostridia S CobW P47K family protein - - - - - - - - - - - - CobW_C,cobW HNDODLHM_00709 97139.C824_02520 2.89e-112 330.0 COG1126@1|root,COG1126@2|Bacteria,1TNYD@1239|Firmicutes,247QZ@186801|Clostridia,36E89@31979|Clostridiaceae 186801|Clostridia E ABC transporter glnQ - 3.6.3.21 ko:K02028 - M00236 - - ko00000,ko00002,ko01000,ko02000 3.A.1.3 - - ABC_tran HNDODLHM_00710 720554.Clocl_3766 2.93e-85 258.0 COG0765@1|root,COG0765@2|Bacteria,1V280@1239|Firmicutes,25C2S@186801|Clostridia,3WHKU@541000|Ruminococcaceae 186801|Clostridia P ABC transporter, permease protein tcyB - - ko:K02029 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - BPD_transp_1 HNDODLHM_00711 411469.EUBHAL_00834 2.1e-73 233.0 COG0834@1|root,COG0834@2|Bacteria,1TQNR@1239|Firmicutes,249Y5@186801|Clostridia,25VIV@186806|Eubacteriaceae 186801|Clostridia ET ABC transporter, substrate-binding protein, family 3 fliY1 - - ko:K02030 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - SBP_bac_3 HNDODLHM_00712 1519439.JPJG01000060_gene1861 1.03e-92 294.0 COG1961@1|root,COG1961@2|Bacteria,1TPBH@1239|Firmicutes,25B5K@186801|Clostridia,2N6BB@216572|Oscillospiraceae 186801|Clostridia L Resolvase, N terminal domain - - - ko:K06400 - - - - ko00000 - - - Recombinase,Resolvase,Zn_ribbon_recom HNDODLHM_00713 1105031.HMPREF1141_2503 1.46e-79 240.0 COG3546@1|root,COG3546@2|Bacteria,1TQVQ@1239|Firmicutes,247YJ@186801|Clostridia,36EF8@31979|Clostridiaceae 186801|Clostridia P PFAM Manganese containing catalase cotJC - - ko:K06334 - - - - ko00000 - - - Mn_catalase HNDODLHM_00714 428125.CLOLEP_01620 3.19e-216 602.0 COG3835@1|root,COG3835@2|Bacteria,1TQWD@1239|Firmicutes,24ZMW@186801|Clostridia,3WHDV@541000|Ruminococcaceae 186801|Clostridia KT Psort location Cytoplasmic, score - - - ko:K02647 - - - - ko00000,ko03000 - - - Diacid_rec,HTH_30 HNDODLHM_00715 428125.CLOLEP_01621 2.11e-101 301.0 COG2884@1|root,COG2884@2|Bacteria,1TP58@1239|Firmicutes,248HW@186801|Clostridia,3WGK4@541000|Ruminococcaceae 186801|Clostridia D cell division ATP-binding protein FtsE ftsE - - ko:K09812 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - ABC_tran HNDODLHM_00716 1120746.CCNL01000017_gene3151 2.52e-90 278.0 COG2177@1|root,COG2177@2|Bacteria 2|Bacteria D cell division ftsX GO:0000910,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008356,GO:0009274,GO:0009276,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0016020,GO:0016021,GO:0016043,GO:0019221,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030312,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0032153,GO:0032506,GO:0034097,GO:0040007,GO:0042173,GO:0042221,GO:0043937,GO:0043938,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0051716,GO:0065007,GO:0070098,GO:0070297,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:0071944,GO:0090529,GO:1902531 - ko:K09811,ko:K09812 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - FtsX HNDODLHM_00717 428125.CLOLEP_01623 7.17e-51 185.0 COG4942@1|root,COG4942@2|Bacteria,1TQ5I@1239|Firmicutes,248ZG@186801|Clostridia,3WGCB@541000|Ruminococcaceae 186801|Clostridia D Peptidase, M23 - - - ko:K21471 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 HNDODLHM_00719 428125.CLOLEP_01626 1.01e-52 171.0 COG0782@1|root,COG0782@2|Bacteria,1V44S@1239|Firmicutes,24HP9@186801|Clostridia,3WIJW@541000|Ruminococcaceae 186801|Clostridia K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides greA - - ko:K03624 - - - - ko00000,ko03021 - - - GreA_GreB,GreA_GreB_N HNDODLHM_00720 478749.BRYFOR_06776 0.0 969.0 COG1190@1|root,COG1190@2|Bacteria,1TP2P@1239|Firmicutes,247VX@186801|Clostridia 186801|Clostridia J Belongs to the class-II aminoacyl-tRNA synthetase family lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon,tRNA_bind HNDODLHM_00721 86416.Clopa_0484 5.2e-100 299.0 COG4106@1|root,COG4106@2|Bacteria,1V5C5@1239|Firmicutes,25B38@186801|Clostridia,36W7R@31979|Clostridiaceae 186801|Clostridia S Methionine biosynthesis protein MetW - - 2.1.1.144 ko:K00598 - - - - ko00000,ko01000 - - - Methyltransf_25,Methyltransf_31 HNDODLHM_00722 1280689.AUJC01000001_gene2396 2.61e-54 176.0 COG1670@1|root,COG1670@2|Bacteria,1V6E0@1239|Firmicutes,24G2M@186801|Clostridia,36I6X@31979|Clostridiaceae 186801|Clostridia J GNAT family - - 2.3.1.128 ko:K03790 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_3 HNDODLHM_00723 511680.BUTYVIB_01501 7.8e-76 229.0 2C7N7@1|root,32RJG@2|Bacteria,1VD8R@1239|Firmicutes,24PQR@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - Glyoxalase HNDODLHM_00724 357809.Cphy_3204 3.16e-115 344.0 COG3393@1|root,COG3393@2|Bacteria,1TRN7@1239|Firmicutes,24A2B@186801|Clostridia,221MY@1506553|Lachnoclostridium 186801|Clostridia S GNAT acetyltransferase - - - - - - - - - - - - Acetyltransf_1,GNAT_acetyltran HNDODLHM_00726 221027.JO40_05600 5.67e-65 207.0 COG1011@1|root,COG1011@2|Bacteria,2J9DT@203691|Spirochaetes 203691|Spirochaetes S HAD-hyrolase-like - - 3.1.3.5,3.8.1.2 ko:K01560,ko:K07025,ko:K08723 ko00230,ko00240,ko00361,ko00625,ko00760,ko01100,ko01110,ko01120,map00230,map00240,map00361,map00625,map00760,map01100,map01110,map01120 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346,R05287 RC00017,RC00697 ko00000,ko00001,ko01000 - - - HAD_2 HNDODLHM_00727 411902.CLOBOL_00114 1.44e-67 213.0 2AHGY@1|root,317UC@2|Bacteria,1V7GD@1239|Firmicutes,24P8A@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00729 536227.CcarbDRAFT_0463 4.51e-58 186.0 COG0454@1|root,COG0456@2|Bacteria,1VHDN@1239|Firmicutes,24FXK@186801|Clostridia,36IBF@31979|Clostridiaceae 186801|Clostridia K acetyltransferase - - - - - - - - - - - - Acetyltransf_1 HNDODLHM_00730 397291.C804_01546 5.89e-55 176.0 COG0454@1|root,COG0456@2|Bacteria,1VAQ8@1239|Firmicutes,24KVY@186801|Clostridia 186801|Clostridia K Acetyltransferase (GNAT) family - - 2.3.1.82 ko:K18816 - - - - br01600,ko00000,ko01000,ko01504 - - - Acetyltransf_1 HNDODLHM_00731 1392493.JIAB01000001_gene1284 2e-75 228.0 COG0454@1|root,COG0456@2|Bacteria,1V3VH@1239|Firmicutes,24IGR@186801|Clostridia,27MXF@186928|unclassified Lachnospiraceae 186801|Clostridia K Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_1 HNDODLHM_00732 575593.HMPREF0491_00508 6.76e-38 129.0 COG0295@1|root,COG0295@2|Bacteria,1V58S@1239|Firmicutes,25B3U@186801|Clostridia 186801|Clostridia F Cytidine and deoxycytidylate deaminase zinc-binding region - - - - - - - - - - - - dCMP_cyt_deam_1 HNDODLHM_00733 1123009.AUID01000008_gene839 2.68e-145 422.0 COG1619@1|root,COG1619@2|Bacteria,1TRBB@1239|Firmicutes,24ABA@186801|Clostridia,26AQY@186813|unclassified Clostridiales 186801|Clostridia V LD-carboxypeptidase - - - - - - - - - - - - Peptidase_S66 HNDODLHM_00735 877414.ATWA01000007_gene202 5.29e-70 249.0 COG4733@1|root,COG5279@1|root,COG4733@2|Bacteria,COG5279@2|Bacteria,1VU1V@1239|Firmicutes,24Y5S@186801|Clostridia,26CE8@186813|unclassified Clostridiales 2|Bacteria G Fibronectin type 3 domain - - - - - - - - - - - - Transglut_core,fn3 HNDODLHM_00736 500632.CLONEX_01516 2.11e-223 618.0 COG0059@1|root,COG0059@2|Bacteria,1TPI7@1239|Firmicutes,247RH@186801|Clostridia 186801|Clostridia H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate ilvC - 1.1.1.86 ko:K00053 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R03051,R04439,R04440,R05068,R05069,R05071 RC00726,RC00836,RC00837,RC01726 ko00000,ko00001,ko00002,ko01000 - - - IlvC,IlvN HNDODLHM_00737 428125.CLOLEP_00059 1.43e-71 219.0 COG0440@1|root,COG0440@2|Bacteria,1V2AJ@1239|Firmicutes,24HZM@186801|Clostridia,3WJ0F@541000|Ruminococcaceae 186801|Clostridia E Acetolactate synthase small ilvN - 2.2.1.6 ko:K01653 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - ACT,ACT_5,ALS_ss_C HNDODLHM_00738 428125.CLOLEP_00060 2.81e-279 776.0 COG0028@1|root,COG0028@2|Bacteria,1TQE8@1239|Firmicutes,2480U@186801|Clostridia,3WHFZ@541000|Ruminococcaceae 186801|Clostridia H acetolactate synthase large subunit ilvI - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N HNDODLHM_00739 537013.CLOSTMETH_03303 5.67e-197 580.0 COG2217@1|root,COG2217@2|Bacteria,1TQ07@1239|Firmicutes,248EH@186801|Clostridia,3WG9Y@541000|Ruminococcaceae 186801|Clostridia P Psort location CytoplasmicMembrane, score cadA - 3.6.3.3,3.6.3.5 ko:K01534 - - - - ko00000,ko01000 3.A.3.6 - - E1-E2_ATPase,HMA,Hydrolase HNDODLHM_00740 657322.FPR_17630 7.48e-38 130.0 COG0640@1|root,COG0640@2|Bacteria,1VA6G@1239|Firmicutes,24JCN@186801|Clostridia,3WK18@541000|Ruminococcaceae 186801|Clostridia K regulatory protein, arsR ziaR - - ko:K21903 - - - - ko00000,ko03000 - - - HTH_5 HNDODLHM_00741 1160721.RBI_II00643 1.28e-218 606.0 COG0057@1|root,COG0057@2|Bacteria,1TNYU@1239|Firmicutes,247IZ@186801|Clostridia,3WGXW@541000|Ruminococcaceae 186801|Clostridia C Belongs to the glyceraldehyde-3-phosphate dehydrogenase family gap - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N HNDODLHM_00742 428125.CLOLEP_00512 1.29e-282 794.0 COG0296@1|root,COG0296@2|Bacteria,1TP4M@1239|Firmicutes,247WH@186801|Clostridia,3WGDM@541000|Ruminococcaceae 186801|Clostridia G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position glgB - 2.4.1.18 ko:K00700 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R02110 - ko00000,ko00001,ko00002,ko01000,ko04147 - CBM48,GH13 - Alpha-amylase,Alpha-amylase_C,CBM_48 HNDODLHM_00743 428125.CLOLEP_00513 7.13e-192 544.0 COG0448@1|root,COG0448@2|Bacteria,1TNZW@1239|Firmicutes,24943@186801|Clostridia,3WGWG@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans glgC - 2.7.7.27 ko:K00975 ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026 M00565 R00948 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transferase HNDODLHM_00744 428125.CLOLEP_00514 6.09e-116 348.0 COG0448@1|root,COG0448@2|Bacteria,1TPZ3@1239|Firmicutes,2482Q@186801|Clostridia,3WGWM@541000|Ruminococcaceae 186801|Clostridia G Glucose-1-phosphate adenylyltransferase, GlgD subunit glgD - 2.7.7.27 ko:K00975 ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026 M00565 R00948 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase HNDODLHM_00745 428125.CLOLEP_00515 8.07e-228 640.0 COG0297@1|root,COG0297@2|Bacteria,1TQ4M@1239|Firmicutes,248G1@186801|Clostridia,3WGRA@541000|Ruminococcaceae 186801|Clostridia G Synthesizes alpha-1,4-glucan chains using ADP-glucose glgA - 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5,Glycos_transf_1 HNDODLHM_00746 1121335.Clst_2135 3.35e-23 98.2 COG3275@1|root,COG3275@2|Bacteria,1VB87@1239|Firmicutes,24UWN@186801|Clostridia,3WKXZ@541000|Ruminococcaceae 186801|Clostridia T Pfam:DUF3816 - - - - - - - - - - - - ECF-ribofla_trS,ECF_trnsprt HNDODLHM_00747 742735.HMPREF9467_01903 1.63e-68 216.0 COG3601@1|root,COG3601@2|Bacteria,1V4BW@1239|Firmicutes,24E4V@186801|Clostridia,21XRD@1506553|Lachnoclostridium 186801|Clostridia U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins ribU - - - - - - - - - - - ECF_trnsprt HNDODLHM_00748 272563.CD630_16850 3.92e-70 222.0 COG4912@1|root,COG4912@2|Bacteria,1TQII@1239|Firmicutes,248N8@186801|Clostridia,25RFD@186804|Peptostreptococcaceae 186801|Clostridia L DNA alkylation repair enzyme - - - - - - - - - - - - DNA_alkylation HNDODLHM_00749 411465.PEPMIC_01366 9.26e-96 290.0 COG3475@1|root,COG3475@2|Bacteria,1TT6A@1239|Firmicutes,249J0@186801|Clostridia 186801|Clostridia M LicD family - - - ko:K07271 - - - - ko00000,ko01000 - - - LicD HNDODLHM_00750 500632.CLONEX_00174 2.75e-118 352.0 COG1215@1|root,COG1215@2|Bacteria,1U4ZW@1239|Firmicutes 1239|Firmicutes M group 2 family protein - - - - - - - - - - - - Glycos_transf_2 HNDODLHM_00752 428125.CLOLEP_02572 1.18e-125 379.0 COG0624@1|root,COG0624@2|Bacteria,1TPEG@1239|Firmicutes,247SK@186801|Clostridia,3WHQP@541000|Ruminococcaceae 186801|Clostridia E Psort location Cytoplasmic, score - - 3.5.1.18 ko:K01439 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R02734 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 HNDODLHM_00753 1105031.HMPREF1141_0986 4.27e-242 703.0 COG4485@1|root,COG4485@2|Bacteria,1TPVY@1239|Firmicutes,24C9R@186801|Clostridia,36VYV@31979|Clostridiaceae 186801|Clostridia S Bacterial membrane protein YfhO - - - - - - - - - - - - YfhO HNDODLHM_00754 1121334.KB911071_gene1988 5.68e-79 241.0 COG1896@1|root,COG1896@2|Bacteria,1TSDU@1239|Firmicutes,24FT8@186801|Clostridia,3WGMJ@541000|Ruminococcaceae 186801|Clostridia S PFAM metal-dependent phosphohydrolase HD sub domain yfbR - 3.1.3.89 ko:K07023,ko:K08722 ko00240,ko01100,map00240,map01100 - R01569,R01664,R01968,R02088,R02102,R10776 RC00017 ko00000,ko00001,ko01000 - - - HD_2,HD_3 HNDODLHM_00755 1121334.KB911066_gene832 1.56e-46 171.0 COG1316@1|root,COG1316@2|Bacteria,1TR1B@1239|Firmicutes,248RH@186801|Clostridia,3WGW9@541000|Ruminococcaceae 186801|Clostridia K Cell envelope-like function transcriptional attenuator common domain protein - - - - - - - - - - - - LytR_cpsA_psr HNDODLHM_00756 140626.JHWB01000009_gene1774 6.22e-50 181.0 COG1316@1|root,COG1316@2|Bacteria,1UY3P@1239|Firmicutes,24H37@186801|Clostridia 186801|Clostridia K Cell envelope-like function transcriptional attenuator common domain protein - - - - - - - - - - - - LytR_cpsA_psr HNDODLHM_00757 479437.Elen_1677 1.31e-58 194.0 COG4509@1|root,COG4509@2|Bacteria,2HVXP@201174|Actinobacteria,4CXPZ@84998|Coriobacteriia 84998|Coriobacteriia S Sortase family - - 3.4.22.70 ko:K08600 - - - - ko00000,ko01000,ko01002,ko01011 - - - Sortase HNDODLHM_00758 1235797.C816_01590 9.16e-136 390.0 COG1101@1|root,COG1101@2|Bacteria,1TPAN@1239|Firmicutes,247WW@186801|Clostridia,2N6JV@216572|Oscillospiraceae 186801|Clostridia S ATPases associated with a variety of cellular activities - - - ko:K05833 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_tran HNDODLHM_00759 1469948.JPNB01000001_gene2244 2.63e-132 386.0 COG4120@1|root,COG4120@2|Bacteria,1TPDJ@1239|Firmicutes,249P1@186801|Clostridia,36EMV@31979|Clostridiaceae 186801|Clostridia S Belongs to the binding-protein-dependent transport system permease family - - - ko:K05832 - M00247 - - ko00000,ko00002,ko02000 - - - BPD_transp_2 HNDODLHM_00760 1469948.JPNB01000001_gene2245 4.44e-137 400.0 COG2984@1|root,COG2984@2|Bacteria,1TPB0@1239|Firmicutes,248X3@186801|Clostridia,36EB5@31979|Clostridiaceae 186801|Clostridia S ABC transporter - - - ko:K01989 - M00247 - - ko00000,ko00002,ko02000 - - - ABC_sub_bind HNDODLHM_00761 1120746.CCNL01000011_gene1888 0.0 1442.0 COG0587@1|root,COG0587@2|Bacteria,2NNVY@2323|unclassified Bacteria 2|Bacteria L DNA polymerase dnaE - 2.7.7.7 ko:K02337 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon HNDODLHM_00762 428125.CLOLEP_03165 3.02e-141 415.0 COG1570@1|root,COG1570@2|Bacteria,1TP4E@1239|Firmicutes,247KE@186801|Clostridia,3WGCP@541000|Ruminococcaceae 186801|Clostridia L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseA - 3.1.11.6 ko:K03601 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_L,tRNA_anti_2 HNDODLHM_00763 428125.CLOLEP_03166 1.22e-115 343.0 COG0533@1|root,COG0533@2|Bacteria,1TRPY@1239|Firmicutes,24CN4@186801|Clostridia,3WG7R@541000|Ruminococcaceae 186801|Clostridia O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction gcp1 - 2.3.1.234 ko:K01409 - - R10648 RC00070,RC00416 ko00000,ko01000,ko03016 - - - Peptidase_M22 HNDODLHM_00764 1121334.KB911066_gene552 1.68e-31 117.0 COG0781@1|root,COG0781@2|Bacteria,1VA9B@1239|Firmicutes,24MQ3@186801|Clostridia,3WK9U@541000|Ruminococcaceae 186801|Clostridia K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons nusB - - ko:K03625 - - - - ko00000,ko03009,ko03021 - - - NusB HNDODLHM_00765 428125.CLOLEP_03536 7.29e-176 504.0 COG0389@1|root,COG0389@2|Bacteria,1TP42@1239|Firmicutes,24855@186801|Clostridia,3WGV5@541000|Ruminococcaceae 186801|Clostridia L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII dinB - 2.7.7.7 ko:K02346 - - - - ko00000,ko01000,ko03400 - - - IMS,IMS_C,IMS_HHH HNDODLHM_00766 428125.CLOLEP_02108 1.03e-31 112.0 2E5HW@1|root,33098@2|Bacteria,1VFFD@1239|Firmicutes,24QMD@186801|Clostridia,3WM6E@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00767 37659.JNLN01000001_gene515 8.29e-142 407.0 COG1533@1|root,COG1533@2|Bacteria,1TSS2@1239|Firmicutes,248SB@186801|Clostridia,36EMC@31979|Clostridiaceae 186801|Clostridia L Radical SAM domain protein - - - - - - - - - - - - Radical_SAM HNDODLHM_00770 1304880.JAGB01000002_gene1652 1.56e-07 60.1 COG5578@1|root,COG5578@2|Bacteria,1V3G3@1239|Firmicutes,24H3P@186801|Clostridia 186801|Clostridia S Protein of unknown function, DUF624 - - - - - - - - - - - - DUF624 HNDODLHM_00772 428125.CLOLEP_03121 1.05e-88 271.0 COG0345@1|root,COG0345@2|Bacteria,1TP1E@1239|Firmicutes,247SR@186801|Clostridia,3WGT7@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer HNDODLHM_00773 1139996.OMQ_02181 2.51e-10 72.4 COG5492@1|root,COG5492@2|Bacteria,1TT7E@1239|Firmicutes,4HCCG@91061|Bacilli 91061|Bacilli N Domain of unknown function (DUF5057) - - - - - - - - - - - - Big_2,DUF5057 HNDODLHM_00774 553973.CLOHYLEM_06652 9.46e-05 49.3 2DQ8Z@1|root,335CG@2|Bacteria,1V9R5@1239|Firmicutes,24I50@186801|Clostridia,2237K@1506553|Lachnoclostridium 186801|Clostridia S Psort location CytoplasmicMembrane, score 9.99 - - - - - - - - - - - - - HNDODLHM_00775 428125.CLOLEP_03188 3.18e-31 118.0 COG0484@1|root,COG0484@2|Bacteria,1V1GK@1239|Firmicutes,2494E@186801|Clostridia,3WITE@541000|Ruminococcaceae 186801|Clostridia O DnaJ domain protein - - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,TPR_2 HNDODLHM_00776 903814.ELI_0802 3.37e-18 96.3 COG3290@1|root,COG3290@2|Bacteria,1VC62@1239|Firmicutes,25FKE@186801|Clostridia,25ZJW@186806|Eubacteriaceae 186801|Clostridia T GHKL domain - - - - - - - - - - - - HATPase_c_5 HNDODLHM_00777 545696.HOLDEFILI_02110 2.04e-17 85.9 COG3279@1|root,COG3279@2|Bacteria,1VC9Q@1239|Firmicutes,3VS40@526524|Erysipelotrichia 526524|Erysipelotrichia KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg HNDODLHM_00778 428125.CLOLEP_02546 3.83e-99 318.0 COG0265@1|root,COG0265@2|Bacteria,1TRM8@1239|Firmicutes,247M5@186801|Clostridia,3WH0E@541000|Ruminococcaceae 186801|Clostridia O Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain - - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 HNDODLHM_00780 203119.Cthe_0507 7.89e-18 87.8 COG5018@1|root,COG5018@2|Bacteria,1TQJZ@1239|Firmicutes,24845@186801|Clostridia,3WM2I@541000|Ruminococcaceae 186801|Clostridia L Exonuclease - - - - - - - - - - - - RNase_T HNDODLHM_00781 428125.CLOLEP_01573 0.0 989.0 COG1217@1|root,COG1217@2|Bacteria,1TQ5Y@1239|Firmicutes,248EB@186801|Clostridia,3WGEU@541000|Ruminococcaceae 186801|Clostridia T GTP-binding protein TypA typA - - ko:K06207 - - - - ko00000 - - - EFG_C,EFG_II,GTP_EFTU,GTP_EFTU_D2 HNDODLHM_00782 428125.CLOLEP_02367 3.72e-50 166.0 COG0681@1|root,COG0681@2|Bacteria,1V6R3@1239|Firmicutes,25CN6@186801|Clostridia,3WKCK@541000|Ruminococcaceae 186801|Clostridia U Belongs to the peptidase S26 family lepB - 3.4.21.89 ko:K03100 ko02024,ko03060,map02024,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S24,Peptidase_S26 HNDODLHM_00783 428125.CLOLEP_02368 3.3e-143 411.0 COG1161@1|root,COG1161@2|Bacteria,1TQGK@1239|Firmicutes,2490H@186801|Clostridia,3WGB7@541000|Ruminococcaceae 186801|Clostridia S Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity ylqF - - ko:K14540 - - - - ko00000,ko03009 - - - MMR_HSR1 HNDODLHM_00784 428125.CLOLEP_02369 4.59e-92 279.0 COG0164@1|root,COG0164@2|Bacteria,1V1D6@1239|Firmicutes,248IT@186801|Clostridia,3WIMJ@541000|Ruminococcaceae 186801|Clostridia L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhB - 3.1.26.4 ko:K03470 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_HII HNDODLHM_00785 938293.CAJU020000013_gene1508 1.85e-26 102.0 COG0792@1|root,COG0792@2|Bacteria,1VFHQ@1239|Firmicutes,24QNK@186801|Clostridia,22HTU@1570339|Peptoniphilaceae 186801|Clostridia L Belongs to the UPF0102 family - - - ko:K07460 - - - - ko00000 - - - UPF0102 HNDODLHM_00786 428125.CLOLEP_02370 3.27e-75 239.0 COG2355@1|root,COG2355@2|Bacteria,1UA7M@1239|Firmicutes,24AE6@186801|Clostridia,3WJ0Z@541000|Ruminococcaceae 186801|Clostridia E Renal dipeptidase family protein - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 HNDODLHM_00787 428125.CLOLEP_02372 8.68e-229 645.0 COG0498@1|root,COG0498@2|Bacteria,1TPR0@1239|Firmicutes,248YY@186801|Clostridia,3WGWF@541000|Ruminococcaceae 186801|Clostridia E Threonine synthase thrC - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS16355 PALP,Thr_synth_N HNDODLHM_00788 1121334.KB911066_gene583 2.89e-100 297.0 COG1768@1|root,COG1768@2|Bacteria,1V3XB@1239|Firmicutes,249BN@186801|Clostridia,3WIIA@541000|Ruminococcaceae 186801|Clostridia S Ser Thr phosphatase family protein - - - ko:K07099 - - - - ko00000 - - - Metallophos HNDODLHM_00789 428125.CLOLEP_02374 6.13e-148 434.0 COG0544@1|root,COG0544@2|Bacteria,1TQQ8@1239|Firmicutes,248C3@186801|Clostridia,3WGS8@541000|Ruminococcaceae 186801|Clostridia D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase tig GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - ko:K03545 - - - - ko00000 - - - FKBP_C,Trigger_C,Trigger_N HNDODLHM_00790 1105031.HMPREF1141_3078 4.72e-107 311.0 COG0740@1|root,COG0740@2|Bacteria,1TQ91@1239|Firmicutes,247QY@186801|Clostridia,36ED5@31979|Clostridiaceae 186801|Clostridia O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins clpP - 3.4.21.92 ko:K01358 ko04112,ko04212,map04112,map04212 - - - ko00000,ko00001,ko01000,ko01002 - - - CLP_protease HNDODLHM_00791 428125.CLOLEP_02376 2.7e-202 573.0 COG1219@1|root,COG1219@2|Bacteria,1TQ00@1239|Firmicutes,2481T@186801|Clostridia,3WGYG@541000|Ruminococcaceae 186801|Clostridia O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP clpX - - ko:K03544 ko04112,map04112 - - - ko00000,ko00001,ko03110 - - - AAA_2,ClpB_D2-small,zf-C4_ClpX HNDODLHM_00792 1120746.CCNL01000011_gene1732 8.94e-300 850.0 COG0466@1|root,COG0466@2|Bacteria,2NNNN@2323|unclassified Bacteria 2|Bacteria O ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner lon GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009408,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 3.4.21.53 ko:K01338 ko04112,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - AAA,LON_substr_bdg,Lon_C HNDODLHM_00793 1105031.HMPREF1141_3075 1.72e-79 242.0 COG0218@1|root,COG0218@2|Bacteria,1TSPW@1239|Firmicutes,24836@186801|Clostridia,36EDR@31979|Clostridiaceae 186801|Clostridia D Necessary for normal cell division and for the maintenance of normal septation engB - - ko:K03978 - - - - ko00000,ko03036 - - - MMR_HSR1 HNDODLHM_00794 1105031.HMPREF1141_3074 1.97e-213 600.0 COG0019@1|root,COG0019@2|Bacteria,1TPE9@1239|Firmicutes,247X7@186801|Clostridia,36FIT@31979|Clostridiaceae 186801|Clostridia E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine lysA - 4.1.1.20 ko:K01586 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R00451 RC00299 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS18870 Orn_Arg_deC_N,Orn_DAP_Arg_deC HNDODLHM_00795 1280698.AUJS01000005_gene2807 1.6e-107 316.0 COG3619@1|root,COG3619@2|Bacteria,1V1VQ@1239|Firmicutes,24DUE@186801|Clostridia,27VY4@189330|Dorea 186801|Clostridia S Protein of unknown function (DUF1275) - - - - - - - - - - - - DUF1275 HNDODLHM_00796 411461.DORFOR_00781 4.05e-256 709.0 COG0334@1|root,COG0334@2|Bacteria,1TP45@1239|Firmicutes,24960@186801|Clostridia,27V70@189330|Dorea 186801|Clostridia C Glutamate/Leucine/Phenylalanine/Valine dehydrogenase gdhA - 1.4.1.3,1.4.1.4 ko:K00261,ko:K00262 ko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964 M00740 R00243,R00248 RC00006,RC02799 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ELFV_dehydrog,ELFV_dehydrog_N HNDODLHM_00797 1120746.CCNL01000011_gene1743 6.44e-137 398.0 COG4974@1|root,COG4974@2|Bacteria,2NP4H@2323|unclassified Bacteria 2|Bacteria L Phage integrase, N-terminal SAM-like domain xerC - - ko:K03733,ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_int_SAM_4,Phage_integrase HNDODLHM_00798 1105031.HMPREF1141_3059 6.17e-38 138.0 28NR9@1|root,2ZBQJ@2|Bacteria,1UZEN@1239|Firmicutes,24G0V@186801|Clostridia,36I0Y@31979|Clostridiaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00799 1120746.CCNL01000011_gene1739 1.01e-227 639.0 COG1066@1|root,COG1066@2|Bacteria,2NNQG@2323|unclassified Bacteria 2|Bacteria O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function radA - - ko:K04485 - - - - ko00000,ko03400 - - - AAA_25,ATPase,ChlI,Lon_C HNDODLHM_00800 428125.CLOLEP_03110 2.56e-62 202.0 COG0860@1|root,COG0860@2|Bacteria,1TQ74@1239|Firmicutes,24FT2@186801|Clostridia,3WIGM@541000|Ruminococcaceae 186801|Clostridia M N-acetylmuramoyl-L-alanine amidase cwlD - 3.5.1.28 ko:K01448 ko01503,map01503 M00727 R04112 RC00064,RC00141 ko00000,ko00001,ko00002,ko01000,ko01011,ko03036 - - - Amidase_3 HNDODLHM_00801 997296.PB1_07447 8.7e-14 79.0 COG0739@1|root,COG0739@2|Bacteria,1TRWJ@1239|Firmicutes,4HB43@91061|Bacilli,1ZBXH@1386|Bacillus 91061|Bacilli M G5 nlpD - - - - - - - - - - - G5,LysM,Peptidase_M23 HNDODLHM_00802 394503.Ccel_0208 3.1e-148 422.0 COG2801@1|root,COG2801@2|Bacteria,1TQQY@1239|Firmicutes,2487W@186801|Clostridia,36W78@31979|Clostridiaceae 186801|Clostridia L PFAM Integrase catalytic region - - - - - - - - - - - - HTH_21,rve,rve_2 HNDODLHM_00803 394503.Ccel_0207 1.75e-83 252.0 COG2963@1|root,COG2963@2|Bacteria,1V09A@1239|Firmicutes,24G3Z@186801|Clostridia,36K7P@31979|Clostridiaceae 186801|Clostridia L PFAM transposase IS3 IS911 family protein - - - ko:K07483 - - - - ko00000 - - - HTH_28,HTH_Tnp_1 HNDODLHM_00805 1120746.CCNL01000010_gene1373 3.75e-105 315.0 COG1313@1|root,COG1313@2|Bacteria,2NP6I@2323|unclassified Bacteria 2|Bacteria C Radical SAM superfamily pflX - 1.97.1.4 ko:K04070 - - - - ko00000,ko01000 - - - Fer4_12,Radical_SAM HNDODLHM_00806 428125.CLOLEP_02682 2.35e-220 630.0 COG1293@1|root,COG1293@2|Bacteria,1TQ8A@1239|Firmicutes,248RK@186801|Clostridia,3WG7T@541000|Ruminococcaceae 186801|Clostridia K Fibronectin-binding protein FbpA - - - - - - - - - - - DUF814,FbpA HNDODLHM_00807 537013.CLOSTMETH_01536 4.91e-56 180.0 COG1576@1|root,COG1576@2|Bacteria,1V3JM@1239|Firmicutes,24HED@186801|Clostridia,3WIDB@541000|Ruminococcaceae 186801|Clostridia J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA rlmH - 2.1.1.177 ko:K00783 - - - - ko00000,ko01000,ko03009 - - - SPOUT_MTase HNDODLHM_00808 1120746.CCNL01000011_gene1619 4.27e-80 249.0 COG1235@1|root,COG1235@2|Bacteria,2NPQ6@2323|unclassified Bacteria 2|Bacteria S Metallo-beta-lactamase superfamily - - - - - - - - - - - - Lactamase_B,Lactamase_B_2 HNDODLHM_00809 428125.CLOLEP_02666 4.3e-201 570.0 COG0766@1|root,COG0766@2|Bacteria,1TPAU@1239|Firmicutes,2488W@186801|Clostridia,3WGXG@541000|Ruminococcaceae 186801|Clostridia M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase HNDODLHM_00810 1031288.AXAA01000021_gene2427 1.92e-181 519.0 COG0148@1|root,COG0148@2|Bacteria,1TP2S@1239|Firmicutes,247TU@186801|Clostridia,36ET7@31979|Clostridiaceae 186801|Clostridia G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis eno - 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N HNDODLHM_00811 1414720.CBYM010000002_gene655 1.58e-22 97.1 COG1388@1|root,COG3757@1|root,COG1388@2|Bacteria,COG3757@2|Bacteria,1V484@1239|Firmicutes,24A8T@186801|Clostridia,36FZK@31979|Clostridiaceae 186801|Clostridia M family 25 lyc2 GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.2.1.17 ko:K01185,ko:K07273 - - - - ko00000,ko01000 - - - CW_binding_1,Glyco_hydro_25,LysM,PG_binding_1,SH3_3 HNDODLHM_00812 742738.HMPREF9460_00778 6.86e-22 90.9 COG3824@1|root,COG3824@2|Bacteria,1VFAZ@1239|Firmicutes,24RK0@186801|Clostridia,2693S@186813|unclassified Clostridiales 186801|Clostridia S Zincin-like metallopeptidase - - - - - - - - - - - - Maf,Zincin_1 HNDODLHM_00813 428125.CLOLEP_03935 7.71e-204 571.0 COG0568@1|root,COG0568@2|Bacteria,1TPD6@1239|Firmicutes,2481I@186801|Clostridia,3WGMV@541000|Ruminococcaceae 186801|Clostridia K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth sigA - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 HNDODLHM_00814 1121334.KB911066_gene1111 4.48e-211 607.0 COG0358@1|root,COG0358@2|Bacteria,1TQ0X@1239|Firmicutes,2480W@186801|Clostridia,3WGFW@541000|Ruminococcaceae 186801|Clostridia L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2 HNDODLHM_00815 1120746.CCNL01000011_gene1555 2.64e-79 243.0 COG1739@1|root,COG1739@2|Bacteria,2NPZP@2323|unclassified Bacteria 2|Bacteria S Uncharacterized protein family UPF0029 yigZ - 2.1.1.45,3.4.13.9 ko:K00560,ko:K01271 ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523 M00053 R02101 RC00219,RC00332 ko00000,ko00001,ko00002,ko01000,ko01002 - - - DUF1949,UPF0029 HNDODLHM_00816 1235797.C816_00840 6.21e-39 129.0 COG0254@1|root,COG0254@2|Bacteria,1VEGU@1239|Firmicutes,24QNZ@186801|Clostridia,2N7PC@216572|Oscillospiraceae 186801|Clostridia J Ribosomal protein L31 rpmE - - ko:K02909 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L31 HNDODLHM_00818 1514668.JOOA01000002_gene2989 0.0 1048.0 COG0441@1|root,COG0441@2|Bacteria,1TP78@1239|Firmicutes,248CH@186801|Clostridia,3WGVM@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) thrS - 6.1.1.3 ko:K01868 ko00970,map00970 M00359,M00360 R03663 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD HNDODLHM_00823 180332.JTGN01000001_gene5260 2.91e-188 539.0 COG0534@1|root,COG0534@2|Bacteria,1TP5P@1239|Firmicutes,247PQ@186801|Clostridia 186801|Clostridia V Psort location CytoplasmicMembrane, score - - - - - - - - - - - - MatE HNDODLHM_00824 1203606.HMPREF1526_01931 2.58e-18 90.5 COG0860@1|root,COG3023@1|root,COG0860@2|Bacteria,COG3023@2|Bacteria,1TRDG@1239|Firmicutes,24ABM@186801|Clostridia,36M5E@31979|Clostridiaceae 186801|Clostridia MV N-acetylmuramoyl-L-alanine amidase - - - - - - - - - - - - Amidase_2,CW_7,SH3_5,SPOR HNDODLHM_00826 1232453.BAIF02000059_gene1610 8.21e-13 64.7 2DRAZ@1|root,33B0U@2|Bacteria,1VN37@1239|Firmicutes,24WNH@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00827 1120746.CCNL01000011_gene1768 0.0 1466.0 COG0178@1|root,COG0178@2|Bacteria,2NNT3@2323|unclassified Bacteria 2|Bacteria L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran HNDODLHM_00828 1105031.HMPREF1141_0307 9.47e-276 777.0 COG0465@1|root,COG0465@2|Bacteria,1TPTV@1239|Firmicutes,247WQ@186801|Clostridia,36DIC@31979|Clostridiaceae 186801|Clostridia O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 HNDODLHM_00829 1120746.CCNL01000013_gene2022 5.05e-72 222.0 COG0634@1|root,COG0634@2|Bacteria,2NPER@2323|unclassified Bacteria 2|Bacteria F Belongs to the purine pyrimidine phosphoribosyltransferase family hpt GO:0003674,GO:0003824,GO:0004422,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006188,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0043094,GO:0043101,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046040,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0052657,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.8,6.3.4.19 ko:K00760,ko:K04075,ko:K15780 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 - R00190,R01132,R01229,R02142,R08237,R08238,R08245,R09597 RC00063,RC00122,RC02633,RC02634 ko00000,ko00001,ko01000,ko03016 - - - Pribosyltran HNDODLHM_00830 1514668.JOOA01000002_gene3067 7.63e-73 243.0 COG0037@1|root,COG0037@2|Bacteria,1TPXP@1239|Firmicutes,248TY@186801|Clostridia,3WHDC@541000|Ruminococcaceae 186801|Clostridia D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS - 6.3.4.19 ko:K04075 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3,TilS,TilS_C HNDODLHM_00831 428125.CLOLEP_02597 5.35e-211 596.0 COG0305@1|root,COG0305@2|Bacteria,1TPCT@1239|Firmicutes,247W3@186801|Clostridia,3WH8B@541000|Ruminococcaceae 186801|Clostridia L Participates in initiation and elongation during chromosome replication dnaB - 3.6.4.12 ko:K02314 ko03030,ko04112,map03030,map04112 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_C HNDODLHM_00832 428125.CLOLEP_02596 1.8e-64 200.0 COG0359@1|root,COG0359@2|Bacteria,1V6QG@1239|Firmicutes,24MT6@186801|Clostridia,3WJCC@541000|Ruminococcaceae 186801|Clostridia J binds to the 23S rRNA rplI - - ko:K02939 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L9_C,Ribosomal_L9_N HNDODLHM_00833 1105031.HMPREF1141_0312 5.92e-182 538.0 COG3887@1|root,COG3887@2|Bacteria,1TPGP@1239|Firmicutes,2484R@186801|Clostridia,36E60@31979|Clostridiaceae 186801|Clostridia T domain protein yybT - - - - - - - - - - - DHH,DHHA1 HNDODLHM_00834 428125.CLOLEP_02592 1.53e-300 841.0 COG0595@1|root,COG0595@2|Bacteria,1TQ9G@1239|Firmicutes,2488J@186801|Clostridia,3WH9M@541000|Ruminococcaceae 186801|Clostridia S An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay rnj - - ko:K12574 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - Lactamase_B,Lactamase_B_2,RMMBL HNDODLHM_00835 1105031.HMPREF1141_0314 2.2e-78 235.0 COG0328@1|root,COG0328@2|Bacteria,1V4A0@1239|Firmicutes,24FSS@186801|Clostridia,36IBC@31979|Clostridiaceae 186801|Clostridia L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhA - 3.1.26.4 ko:K03469 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_H HNDODLHM_00836 1120746.CCNL01000013_gene2029 1.2e-206 580.0 COG1104@1|root,COG1104@2|Bacteria,2NNVR@2323|unclassified Bacteria 2|Bacteria E Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine iscS - 2.8.1.7 ko:K04487 ko00730,ko01100,ko04122,map00730,map01100,map04122 - R07460,R11528,R11529 RC01789,RC02313 ko00000,ko00001,ko01000,ko02048,ko03016,ko03029 - - - Aminotran_5 HNDODLHM_00837 1120746.CCNL01000013_gene2030 1.79e-87 258.0 COG0822@1|root,COG0822@2|Bacteria,2NPRS@2323|unclassified Bacteria 2|Bacteria C NifU-like N terminal domain nifU - - ko:K04488 - - - - ko00000 - - - NifU_N HNDODLHM_00838 1458462.JNLK01000001_gene1340 5.2e-30 119.0 COG4464@1|root,COG4464@2|Bacteria,1TQ1T@1239|Firmicutes,24JQU@186801|Clostridia,27NIX@186928|unclassified Lachnospiraceae 186801|Clostridia GM capsular polysaccharide biosynthesis protein - - 3.1.3.48 ko:K01104 - - - - ko00000,ko01000 - - - - HNDODLHM_00839 428125.CLOLEP_02914 7.35e-199 557.0 COG0473@1|root,COG0473@2|Bacteria,1TPEM@1239|Firmicutes,24A63@186801|Clostridia,3WG9H@541000|Ruminococcaceae 186801|Clostridia C Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate leuB - 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh HNDODLHM_00840 428125.CLOLEP_02913 2.06e-82 251.0 COG0406@1|root,COG0406@2|Bacteria,1V6G1@1239|Firmicutes,24JP4@186801|Clostridia,3WJCY@541000|Ruminococcaceae 186801|Clostridia G Psort location Cytoplasmic, score cobC - 3.1.3.73 ko:K02226 ko00860,ko01100,map00860,map01100 M00122 R04594,R11173 RC00017 ko00000,ko00001,ko00002,ko01000 - - - His_Phos_1 HNDODLHM_00841 428125.CLOLEP_02912 3.07e-55 183.0 COG1396@1|root,COG1396@2|Bacteria,1V2ZX@1239|Firmicutes,24EC9@186801|Clostridia,3WIEA@541000|Ruminococcaceae 186801|Clostridia K Helix-turn-helix - - - - - - - - - - - - HTH_3,HTH_31 HNDODLHM_00842 1120746.CCNL01000011_gene1799 1.98e-57 180.0 COG2337@1|root,COG2337@2|Bacteria,2NS2Z@2323|unclassified Bacteria 2|Bacteria T PemK-like, MazF-like toxin of type II toxin-antitoxin system ndoA - - ko:K07171 - - - - ko00000,ko01000,ko02048 - - - PemK_toxin HNDODLHM_00844 411474.COPEUT_01919 1.06e-70 215.0 2DU3D@1|root,32UWH@2|Bacteria,1V6ZJ@1239|Firmicutes,24PSR@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - DUF4829 HNDODLHM_00845 515620.EUBELI_00022 6.7e-71 233.0 COG1376@1|root,COG1376@2|Bacteria,1UK0I@1239|Firmicutes,249X8@186801|Clostridia,25W21@186806|Eubacteriaceae 186801|Clostridia V L,D-transpeptidase catalytic domain - - 3.4.16.4 ko:K07258 ko00550,ko01100,map00550,map01100 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - Cu_amine_oxidN1,DUF5011,YkuD HNDODLHM_00846 1160721.RBI_I00418 1.21e-77 236.0 2943S@1|root,2ZRIE@2|Bacteria,1V3J6@1239|Firmicutes,24HEP@186801|Clostridia,3WICX@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score KatE - - - - - - - - - - - - HNDODLHM_00847 1105031.HMPREF1141_1748 1.46e-66 207.0 COG1418@1|root,COG1418@2|Bacteria,1V70P@1239|Firmicutes,24JTJ@186801|Clostridia,36FE1@31979|Clostridiaceae 186801|Clostridia S HD domain - - - - - - - - - - - - HD HNDODLHM_00848 1256908.HMPREF0373_02733 0.0 1319.0 COG1882@1|root,COG1882@2|Bacteria,1TPTF@1239|Firmicutes,247YY@186801|Clostridia,25VH6@186806|Eubacteriaceae 186801|Clostridia C Psort location Cytoplasmic, score pflB - 2.3.1.54 ko:K00656 ko00620,ko00640,ko00650,ko01100,ko01120,map00620,map00640,map00650,map01100,map01120 - R00212,R06987 RC00004,RC01181,RC02742,RC02833 ko00000,ko00001,ko01000 - - - Gly_radical,PFL-like HNDODLHM_00849 1256908.HMPREF0373_02731 2.93e-137 392.0 COG1180@1|root,COG1180@2|Bacteria,1TPK2@1239|Firmicutes,247NA@186801|Clostridia,25VM2@186806|Eubacteriaceae 186801|Clostridia C Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine pflA - 1.97.1.4 ko:K04069 - - R04710 - ko00000,ko01000 - - - Fer4_12,Radical_SAM HNDODLHM_00850 537013.CLOSTMETH_00934 1.23e-127 395.0 COG0737@1|root,COG0737@2|Bacteria,1TPV2@1239|Firmicutes,2491Y@186801|Clostridia,3WIIN@541000|Ruminococcaceae 186801|Clostridia F Belongs to the 5'-nucleotidase family - - 3.1.3.5,3.6.1.45 ko:K11751 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - 5_nucleotid_C,Metallophos HNDODLHM_00853 483218.BACPEC_02375 3.04e-191 541.0 COG1004@1|root,COG1004@2|Bacteria,1TQFN@1239|Firmicutes,25B1W@186801|Clostridia,2682F@186813|unclassified Clostridiales 186801|Clostridia M UDP binding domain ugd - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N HNDODLHM_00854 411490.ANACAC_00199 1.3e-176 519.0 COG1165@1|root,COG1165@2|Bacteria,1TRDB@1239|Firmicutes,24CPJ@186801|Clostridia 186801|Clostridia H Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) menD - 2.2.1.9 ko:K02551 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116 R08165 RC02186 ko00000,ko00001,ko00002,ko01000 - - iSBO_1134.SBO_2301 Abhydrolase_6,TPP_enzyme_C,TPP_enzyme_M_2,TPP_enzyme_N HNDODLHM_00855 357809.Cphy_3682 2.07e-91 285.0 COG2327@1|root,COG2327@2|Bacteria,1V4VX@1239|Firmicutes,24C2N@186801|Clostridia,223PJ@1506553|Lachnoclostridium 186801|Clostridia S Polysaccharide pyruvyl transferase - - - - - - - - - - - - PS_pyruv_trans HNDODLHM_00856 1499684.CCNP01000020_gene2607 1.05e-76 243.0 COG0463@1|root,COG0463@2|Bacteria,1VAMZ@1239|Firmicutes,25BN8@186801|Clostridia,36WJQ@31979|Clostridiaceae 186801|Clostridia M Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 HNDODLHM_00857 553218.CAMRE0001_2235 6.66e-107 335.0 COG2244@1|root,COG2244@2|Bacteria,1NIMS@1224|Proteobacteria,42N68@68525|delta/epsilon subdivisions,2YMNN@29547|Epsilonproteobacteria 29547|Epsilonproteobacteria S Polysaccharide biosynthesis protein pglK - - - - - - - - - - - Polysacc_synt HNDODLHM_00858 742766.HMPREF9455_01199 1.05e-71 228.0 COG2327@1|root,COG2327@2|Bacteria,4NEU1@976|Bacteroidetes,2FV51@200643|Bacteroidia,230R6@171551|Porphyromonadaceae 976|Bacteroidetes S Polysaccharide pyruvyl transferase - - - ko:K13665 - - - - ko00000 - - - PS_pyruv_trans HNDODLHM_00860 203119.Cthe_1355 2.41e-58 196.0 COG1216@1|root,COG1216@2|Bacteria,1V7WV@1239|Firmicutes,24PJ6@186801|Clostridia 186801|Clostridia H Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 HNDODLHM_00861 1131730.BAVI_17107 5.89e-100 308.0 COG0438@1|root,COG0438@2|Bacteria,1TRCM@1239|Firmicutes,4HC0S@91061|Bacilli,1ZEMI@1386|Bacillus 91061|Bacilli M Glycosyl transferases group 1 - - - ko:K19424 - - - - ko00000,ko01000,ko01003 - GT4 - Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1 HNDODLHM_00862 1487921.DP68_03600 3.6e-51 179.0 COG1442@1|root,COG1442@2|Bacteria,1UY89@1239|Firmicutes,249RV@186801|Clostridia,36J5F@31979|Clostridiaceae 186801|Clostridia M Glycosyl transferase family 8 - - - - - - - - - - - - Cys_rich_CPCC,Glyco_transf_8 HNDODLHM_00863 1123288.SOV_3c03190 3.04e-99 291.0 COG1898@1|root,COG1898@2|Bacteria,1V2VG@1239|Firmicutes,4H7IN@909932|Negativicutes 909932|Negativicutes M dTDP-4-dehydrorhamnose 3,5-epimerase - - - - - - - - - - - - dTDP_sugar_isom HNDODLHM_00864 585394.RHOM_12225 1.12e-114 340.0 COG0451@1|root,COG0451@2|Bacteria,1UZR1@1239|Firmicutes,24DWP@186801|Clostridia 186801|Clostridia GM NAD dependent epimerase dehydratase family - - - - - - - - - - - - Epimerase HNDODLHM_00865 931276.Cspa_c54140 5.77e-195 547.0 COG0451@1|root,COG0451@2|Bacteria,1TQW7@1239|Firmicutes,24BI6@186801|Clostridia,36EA9@31979|Clostridiaceae 186801|Clostridia M CDP-glucose 4,6-dehydratase rfbG - 4.2.1.45 ko:K01709 ko00520,map00520 - R02426 RC00402 ko00000,ko00001,ko01000 - - - GDP_Man_Dehyd HNDODLHM_00866 1235802.C823_02527 5.54e-134 385.0 COG1208@1|root,COG1208@2|Bacteria,1TPII@1239|Firmicutes,249GT@186801|Clostridia,25VFZ@186806|Eubacteriaceae 186801|Clostridia JM Nucleotidyl transferase rfbF - 2.7.7.33 ko:K00978 ko00500,ko00520,ko01100,map00500,map00520,map01100 - R00956 RC00002 ko00000,ko00001,ko01000 - - - NTP_transferase HNDODLHM_00867 1123284.KB899059_gene800 1.73e-13 69.7 COG2148@1|root,COG2148@2|Bacteria,1V2YT@1239|Firmicutes,4IQ2I@91061|Bacilli 91061|Bacilli M Bacterial sugar transferase - - - - - - - - - - - - Bac_transf HNDODLHM_00868 1123405.AUMM01000004_gene787 2.29e-44 155.0 COG0489@1|root,COG0489@2|Bacteria,1TS4R@1239|Firmicutes,4HCEN@91061|Bacilli,26NQB@186821|Sporolactobacillaceae 91061|Bacilli D NUBPL iron-transfer P-loop NTPase ywqD - 2.7.10.2 ko:K00903 - - - - ko00000,ko01000,ko01001 - - - AAA_31,ParA HNDODLHM_00869 903814.ELI_3079 1.59e-24 104.0 COG3944@1|root,COG3944@2|Bacteria,1UZCR@1239|Firmicutes,24HS8@186801|Clostridia,25WNV@186806|Eubacteriaceae 186801|Clostridia M Chain length determinant protein - - - - - - - - - - - - GNVR,Wzz HNDODLHM_00870 428125.CLOLEP_01590 1.58e-77 239.0 COG1139@1|root,COG1139@2|Bacteria,1TP90@1239|Firmicutes,249B6@186801|Clostridia,3WIFU@541000|Ruminococcaceae 186801|Clostridia C LUD domain - - - - - - - - - - - - LUD_dom HNDODLHM_00872 1120746.CCNL01000011_gene1609 6.71e-156 455.0 COG0144@1|root,COG3270@1|root,COG0144@2|Bacteria,COG3270@2|Bacteria,2NPE2@2323|unclassified Bacteria 2|Bacteria J N-terminal domain of 16S rRNA methyltransferase RsmF rsmF GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176,2.1.1.178 ko:K03500,ko:K11392 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,Methyltr_RsmF_N,Methyltranf_PUA,RsmF_methylt_CI HNDODLHM_00873 1235835.C814_02088 1.05e-124 363.0 COG0030@1|root,COG0030@2|Bacteria,1TP9W@1239|Firmicutes,248RY@186801|Clostridia,3WGWE@541000|Ruminococcaceae 186801|Clostridia J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits ksgA - 2.1.1.182 ko:K02528 - - R10716 RC00003,RC03257 ko00000,ko01000,ko03009 - - - RrnaAD HNDODLHM_00875 411902.CLOBOL_04443 0.0 1142.0 COG0474@1|root,COG0474@2|Bacteria,1TPF5@1239|Firmicutes,247JN@186801|Clostridia,21XE0@1506553|Lachnoclostridium 186801|Clostridia P TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC - - 3.6.3.8 ko:K01537 - - - - ko00000,ko01000 3.A.3.2 - - Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase HNDODLHM_00876 1235835.C814_00101 2.13e-84 253.0 COG0221@1|root,COG0221@2|Bacteria,1V2DF@1239|Firmicutes,24G1A@186801|Clostridia,3WI3Y@541000|Ruminococcaceae 186801|Clostridia C Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions ppa - 3.6.1.1 ko:K01507 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyrophosphatase HNDODLHM_00878 428125.CLOLEP_01578 1.8e-112 332.0 COG1496@1|root,COG1496@2|Bacteria,1TS34@1239|Firmicutes,248TD@186801|Clostridia,3WHV2@541000|Ruminococcaceae 186801|Clostridia S Belongs to the multicopper oxidase YfiH RL5 family yfiH - - ko:K05810 - - - - ko00000,ko01000 - - - Cu-oxidase_4 HNDODLHM_00879 1120746.CCNL01000011_gene1772 1.81e-141 409.0 COG0564@1|root,COG0564@2|Bacteria,2NNY5@2323|unclassified Bacteria 2|Bacteria J Responsible for synthesis of pseudouridine from uracil rluC - 5.4.99.23,5.4.99.24 ko:K06179,ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 HNDODLHM_00881 1121334.KB911066_gene634 1.67e-104 329.0 COG1388@1|root,COG1388@2|Bacteria,1TSVC@1239|Firmicutes,248VQ@186801|Clostridia,3WHVR@541000|Ruminococcaceae 186801|Clostridia M Psort location Cytoplasmic, score - - - - - - - - - - - - DUF3794,LysM HNDODLHM_00882 428125.CLOLEP_02350 3.06e-245 686.0 COG5019@1|root,COG5019@2|Bacteria,1UHVS@1239|Firmicutes,25E4Q@186801|Clostridia,3WGJE@541000|Ruminococcaceae 186801|Clostridia DZ ATPase. Has a role at an early stage in the morphogenesis of the spore coat spoIVA - - ko:K06398 - - - - ko00000 - - - Spore_IV_A HNDODLHM_00884 1120746.CCNL01000010_gene1410 7.21e-200 564.0 COG1883@1|root,COG1883@2|Bacteria,2NP19@2323|unclassified Bacteria 2|Bacteria C Na+-transporting oxaloacetate decarboxylase beta subunit gcdB - 4.1.1.3 ko:K01572 ko00620,ko01100,map00620,map01100 - R00217 RC00040 ko00000,ko00001,ko01000,ko02000 3.B.1.1.1 - - OAD_beta HNDODLHM_00885 333138.LQ50_22235 5.58e-12 71.2 COG3944@1|root,COG3944@2|Bacteria,1UZCR@1239|Firmicutes,4HE26@91061|Bacilli,1ZBJ4@1386|Bacillus 91061|Bacilli M biosynthesis protein ywqC - - ko:K19420 - - - - ko00000 - - - GNVR,Wzz HNDODLHM_00886 1301100.HG529225_gene4212 4.62e-43 152.0 COG0489@1|root,COG0489@2|Bacteria,1TS4R@1239|Firmicutes,24B0Z@186801|Clostridia,36DN2@31979|Clostridiaceae 186801|Clostridia D Capsular exopolysaccharide family ywqD - - - - - - - - - - - AAA_31,ParA,Wzz HNDODLHM_00887 428125.CLOLEP_02697 7.81e-201 568.0 COG1167@1|root,COG1167@2|Bacteria,1TPMY@1239|Firmicutes,24986@186801|Clostridia,3WGVJ@541000|Ruminococcaceae 186801|Clostridia EK Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - - - - - - - - - - Aminotran_MocR HNDODLHM_00888 1120746.CCNL01000011_gene1840 2.37e-181 522.0 COG0342@1|root,COG0342@2|Bacteria,2NNNU@2323|unclassified Bacteria 2|Bacteria U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - ko:K03072,ko:K12257 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG HNDODLHM_00889 428125.CLOLEP_02702 5.11e-105 317.0 COG0341@1|root,COG0341@2|Bacteria,1TSZE@1239|Firmicutes,249A3@186801|Clostridia,3WGWX@541000|Ruminococcaceae 186801|Clostridia U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secF - - ko:K03074 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG HNDODLHM_00890 1292035.H476_2990 7.1e-92 284.0 COG0803@1|root,COG0803@2|Bacteria,1TPG7@1239|Firmicutes,249VZ@186801|Clostridia,25R39@186804|Peptostreptococcaceae 186801|Clostridia P Belongs to the bacterial solute-binding protein 9 family adcA - - ko:K09815 ko02010,map02010 M00242 - - ko00000,ko00001,ko00002,ko02000 3.A.1.15.3,3.A.1.15.5 - - ZnuA HNDODLHM_00891 471875.RUMLAC_02415 2.08e-89 271.0 COG1121@1|root,COG1121@2|Bacteria,1TQ68@1239|Firmicutes,248F1@186801|Clostridia,3WHEK@541000|Ruminococcaceae 186801|Clostridia P ABC transporter - - - ko:K09817 ko02010,map02010 M00242 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.15.3,3.A.1.15.5 - - ABC_tran HNDODLHM_00892 903814.ELI_0567 2.39e-108 322.0 COG1108@1|root,COG1108@2|Bacteria,1TR79@1239|Firmicutes,24875@186801|Clostridia,25V63@186806|Eubacteriaceae 186801|Clostridia P ABC 3 transport family - - - ko:K09816 ko02010,map02010 M00242 - - ko00000,ko00001,ko00002,ko02000 3.A.1.15.3,3.A.1.15.5 - - ABC-3 HNDODLHM_00893 1123299.AUKZ01000004_gene448 5.52e-62 192.0 COG4679@1|root,COG4679@2|Bacteria,1VBJ4@1239|Firmicutes,4HQA2@91061|Bacilli 91061|Bacilli S Phage derived protein Gp49-like (DUF891) - - - - - - - - - - - - Gp49 HNDODLHM_00894 1297857.CAUK01000004_gene1442 1.24e-34 121.0 COG3620@1|root,COG3620@2|Bacteria,1VD4K@1239|Firmicutes 1239|Firmicutes K Helix-turn-helix domain - - - - - - - - - - - - HTH_3 HNDODLHM_00896 1120746.CCNL01000012_gene1919 1.26e-61 198.0 COG2323@1|root,COG2323@2|Bacteria 2|Bacteria K membrane - - - - - - - - - - - - DUF421 HNDODLHM_00897 748224.HMPREF9436_00794 3.67e-135 388.0 COG0716@1|root,COG1145@1|root,COG0716@2|Bacteria,COG1145@2|Bacteria,1VSX9@1239|Firmicutes,24ZRM@186801|Clostridia,3WSJJ@541000|Ruminococcaceae 186801|Clostridia C 4Fe-4S binding domain - - - - - - - - - - - - Fer4,Fer4_4,Flavodoxin_5 HNDODLHM_00899 1280706.AUJE01000036_gene1063 4.05e-200 559.0 COG3943@1|root,COG3943@2|Bacteria,1TPH4@1239|Firmicutes,4H54Z@909932|Negativicutes 909932|Negativicutes S Psort location Cytoplasmic, score - - - - - - - - - - - - Virulence_RhuM HNDODLHM_00900 411471.SUBVAR_06006 6.74e-257 709.0 COG0582@1|root,COG0582@2|Bacteria,1TPCB@1239|Firmicutes,2485Y@186801|Clostridia,3WHDU@541000|Ruminococcaceae 186801|Clostridia L Belongs to the 'phage' integrase family - - - - - - - - - - - - Integrase_DNA,Phage_int_SAM_3,Phage_int_SAM_4,Phage_int_SAM_5,Phage_integrase HNDODLHM_00901 1280698.AUJS01000020_gene1405 6.4e-33 114.0 2E3CH@1|root,32YBT@2|Bacteria,1VHJT@1239|Firmicutes,24RED@186801|Clostridia,27X7K@189330|Dorea 186801|Clostridia S Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - - HNDODLHM_00903 411471.SUBVAR_04508 9.79e-62 204.0 COG0582@1|root,COG0582@2|Bacteria,1TTJI@1239|Firmicutes,247VU@186801|Clostridia,3WHNJ@541000|Ruminococcaceae 186801|Clostridia L Phage integrase family - - - - - - - - - - - - Phage_int_SAM_3,Phage_int_SAM_5,Phage_integrase HNDODLHM_00905 411471.SUBVAR_06560 1.79e-84 258.0 2DZPR@1|root,32VFM@2|Bacteria,1VC7J@1239|Firmicutes,24NY3@186801|Clostridia,3WMA2@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - HTH_17 HNDODLHM_00906 78345.BMERY_0844 3.95e-189 547.0 COG0582@1|root,COG0732@1|root,COG0582@2|Bacteria,COG0732@2|Bacteria,2HUXN@201174|Actinobacteria,4CZ21@85004|Bifidobacteriales 201174|Actinobacteria L Phage integrase family - - - - - - - - - - - - Phage_int_SAM_5,Phage_integrase HNDODLHM_00907 33035.JPJF01000133_gene4526 5.02e-64 198.0 COG1266@1|root,COG1266@2|Bacteria,1TRT7@1239|Firmicutes,24DRE@186801|Clostridia 186801|Clostridia S CAAX protease self-immunity - - - - - - - - - - - - Abi HNDODLHM_00908 1280698.AUJS01000006_gene2864 1.35e-97 305.0 COG0038@1|root,COG0038@2|Bacteria,1UZ4F@1239|Firmicutes,24921@186801|Clostridia 186801|Clostridia P Voltage gated chloride channel - - - - - - - - - - - - Voltage_CLC HNDODLHM_00909 411463.EUBVEN_00894 4.78e-186 534.0 COG0534@1|root,COG0534@2|Bacteria,1TNZN@1239|Firmicutes,247YX@186801|Clostridia,25VAA@186806|Eubacteriaceae 186801|Clostridia V CytoplasmicMembrane, score - - - - - - - - - - - - MatE HNDODLHM_00911 500633.CLOHIR_01481 5.22e-185 520.0 COG0673@1|root,COG0673@2|Bacteria,1TPT5@1239|Firmicutes,248MV@186801|Clostridia,25T34@186804|Peptostreptococcaceae 186801|Clostridia S Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C HNDODLHM_00912 411463.EUBVEN_01066 4.44e-110 318.0 COG1592@1|root,COG1592@2|Bacteria,1V1FF@1239|Firmicutes,248V2@186801|Clostridia,25W6N@186806|Eubacteriaceae 186801|Clostridia C Psort location Cytoplasmic, score rbr - - - - - - - - - - - Flavin_Reduct,Rubrerythrin HNDODLHM_00913 868864.Dester_0225 1.19e-45 160.0 COG2894@1|root,COG2894@2|Bacteria,2G3IW@200783|Aquificae 200783|Aquificae D Belongs to the ParA family minD - - ko:K03609 - - - - ko00000,ko03036,ko04812 - - - CbiA HNDODLHM_00914 428125.CLOLEP_01229 4.36e-85 251.0 COG1803@1|root,COG1803@2|Bacteria,1V3KQ@1239|Firmicutes,24FUQ@186801|Clostridia,3WII3@541000|Ruminococcaceae 186801|Clostridia G methylglyoxal synthase mgsA - 4.2.3.3 ko:K01734 ko00640,ko01120,map00640,map01120 - R01016 RC00424 ko00000,ko00001,ko01000 - - - MGS HNDODLHM_00915 1105031.HMPREF1141_1469 4.88e-200 566.0 COG0124@1|root,COG0124@2|Bacteria,1TP3D@1239|Firmicutes,24852@186801|Clostridia,36FA9@31979|Clostridiaceae 186801|Clostridia J histidyl-tRNA synthetase hisS - 6.1.1.21 ko:K01892 ko00970,map00970 M00359,M00360 R03655 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_His HNDODLHM_00916 1514668.JOOA01000002_gene3012 0.0 895.0 COG0173@1|root,COG0173@2|Bacteria,1TPCN@1239|Firmicutes,247Z3@186801|Clostridia,3WGX1@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) aspS - 6.1.1.12 ko:K01876 ko00970,map00970 M00359,M00360 R05577 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GAD,tRNA-synt_2,tRNA_anti-codon HNDODLHM_00917 1408323.JQKK01000025_gene1380 5.6e-45 159.0 2EN4B@1|root,33FSE@2|Bacteria,1VPF9@1239|Firmicutes,24SXK@186801|Clostridia,27NCJ@186928|unclassified Lachnospiraceae 186801|Clostridia - - - - - - - - - - - - - - Tim44,zinc_ribbon_2 HNDODLHM_00918 397290.C810_03926 2.95e-145 427.0 COG4260@1|root,COG4260@2|Bacteria,1TRYU@1239|Firmicutes,24901@186801|Clostridia,27ICK@186928|unclassified Lachnospiraceae 186801|Clostridia S SPFH domain-Band 7 family - - - - - - - - - - - - Band_7_1 HNDODLHM_00919 1201292.DR75_1226 1.33e-99 307.0 COG1645@1|root,COG1645@2|Bacteria,1TRYG@1239|Firmicutes,4ISY0@91061|Bacilli,4B06G@81852|Enterococcaceae 91061|Bacilli S bacterial-type flagellum-dependent swarming motility - - - - - - - - - - - - - HNDODLHM_00921 755731.Clo1100_3843 5.34e-159 456.0 COG0502@1|root,COG0502@2|Bacteria,1TPYQ@1239|Firmicutes,248H8@186801|Clostridia,36DIQ@31979|Clostridiaceae 186801|Clostridia C radical SAM domain protein hydE - 2.8.1.6 ko:K01012 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R01078 RC00441 ko00000,ko00001,ko00002,ko01000 - - - BATS,Radical_SAM HNDODLHM_00922 585394.RHOM_04680 6.69e-273 754.0 COG0502@1|root,COG0502@2|Bacteria,1TPEX@1239|Firmicutes,248PF@186801|Clostridia 186801|Clostridia C biosynthesis protein ThiH hydG - 4.1.99.19 ko:K03150 ko00730,ko01100,map00730,map01100 - R10246 RC01434,RC03095 ko00000,ko00001,ko01000 - - - BATS,Radical_SAM HNDODLHM_00923 1304866.K413DRAFT_4117 1.42e-175 501.0 COG0486@1|root,COG0486@2|Bacteria,1TQA8@1239|Firmicutes,247M4@186801|Clostridia,36DYR@31979|Clostridiaceae 186801|Clostridia S small GTP-binding protein hydF - - - - - - - - - - - MMR_HSR1 HNDODLHM_00924 1121344.JHZO01000005_gene259 1.47e-223 635.0 COG0365@1|root,COG0365@2|Bacteria,1TQTI@1239|Firmicutes,25AZ5@186801|Clostridia,3WH41@541000|Ruminococcaceae 186801|Clostridia I AMP-dependent synthetase and ligase - - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - AMP-binding,AMP-binding_C,Cupin_2,HTH_3 HNDODLHM_00925 1235793.C809_00466 0.0 948.0 COG1523@1|root,COG1523@2|Bacteria,1TP3M@1239|Firmicutes,2481P@186801|Clostridia,27J01@186928|unclassified Lachnospiraceae 186801|Clostridia G Alpha amylase, catalytic domain glgX - 3.2.1.68 ko:K01214 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R09995,R11261 - ko00000,ko00001,ko00002,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48 HNDODLHM_00926 471875.RUMLAC_00486 1.28e-117 369.0 arCOG08054@1|root,2Z8AD@2|Bacteria,1TQ1J@1239|Firmicutes,2485U@186801|Clostridia,3WH6F@541000|Ruminococcaceae 186801|Clostridia S Carbohydrate-binding domain-containing protein Cthe_2159 - GO:0001871,GO:0003674,GO:0005488,GO:0005509,GO:0030246,GO:0030247,GO:0030248,GO:0043167,GO:0043169,GO:0046872,GO:0048028,GO:2001062 - - - - - - - - - - Cthe_2159 HNDODLHM_00927 622312.ROSEINA2194_02868 9.04e-98 291.0 COG1285@1|root,COG1285@2|Bacteria,1V1GI@1239|Firmicutes,24G1I@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF4956 HNDODLHM_00928 622312.ROSEINA2194_02869 1.62e-102 305.0 COG5036@1|root,COG5036@2|Bacteria,1V1FZ@1239|Firmicutes,24FRH@186801|Clostridia 186801|Clostridia P VTC domain - - - - - - - - - - - - VTC HNDODLHM_00929 1410625.JHWK01000004_gene666 4.32e-127 380.0 COG0642@1|root,COG2205@2|Bacteria,1UHUJ@1239|Firmicutes,25E2Z@186801|Clostridia,27KM4@186928|unclassified Lachnospiraceae 186801|Clostridia T His Kinase A (phosphoacceptor) domain dltS - - - - - - - - - - - HATPase_c,HisKA HNDODLHM_00930 1499683.CCFF01000017_gene1620 4.65e-104 306.0 COG0745@1|root,COG0745@2|Bacteria,1TPU2@1239|Firmicutes,24B71@186801|Clostridia,36FD6@31979|Clostridiaceae 186801|Clostridia T PFAM response regulator receiver dltR - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_00931 411460.RUMTOR_02162 9.81e-191 539.0 COG3598@1|root,COG3598@2|Bacteria,1TU5N@1239|Firmicutes,247KK@186801|Clostridia,3Y28V@572511|Blautia 186801|Clostridia L AAA domain - - - - - - - - - - - - AAA_25,PriCT_1,Prim-Pol HNDODLHM_00932 428125.CLOLEP_03221 1.76e-59 184.0 2AQJ5@1|root,31FRY@2|Bacteria,1V6TG@1239|Firmicutes,24JD1@186801|Clostridia,3WJXJ@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00933 547043.BIFPSEUDO_03507 2.23e-180 511.0 COG0582@1|root,COG0582@2|Bacteria,2GISN@201174|Actinobacteria,4CZKR@85004|Bifidobacteriales 201174|Actinobacteria L Phage integrase family - - - - - - - - - - - - Arm-DNA-bind_4,Phage_int_SAM_3,Phage_integrase HNDODLHM_00934 411471.SUBVAR_05117 8.54e-26 97.1 2E5UB@1|root,330IM@2|Bacteria,1VFEC@1239|Firmicutes,24R3P@186801|Clostridia,3WM8N@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_00935 1514668.JOOA01000002_gene2027 1.29e-69 214.0 COG1396@1|root,COG1396@2|Bacteria,1V1JY@1239|Firmicutes,24R5G@186801|Clostridia,3WRJ3@541000|Ruminococcaceae 186801|Clostridia K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_3 HNDODLHM_00936 1123057.P872_18840 3.03e-85 263.0 COG0322@1|root,COG0322@2|Bacteria,4NHBM@976|Bacteroidetes,47PDH@768503|Cytophagia 976|Bacteroidetes L Domain of unknown function (DUF4357) - - - - - - - - - - - - DUF4357,GIY-YIG HNDODLHM_00937 1160721.RBI_I02016 5.86e-291 802.0 COG0519@1|root,COG0519@2|Bacteria,1TPG8@1239|Firmicutes,2487F@186801|Clostridia,3WGXK@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the synthesis of GMP from XMP guaA - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase,tRNA_Me_trans HNDODLHM_00938 428125.CLOLEP_00300 7.31e-92 278.0 COG1207@1|root,COG1207@2|Bacteria,1TP88@1239|Firmicutes,248Z3@186801|Clostridia,3WGU5@541000|Ruminococcaceae 186801|Clostridia M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain glmU - 2.3.1.157,2.7.7.23 ko:K04042 ko00520,ko01100,ko01130,map00520,map01100,map01130 M00362 R00416,R05332 RC00002,RC00004,RC00166 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,Hexapep_2,NTP_transf_3,NTP_transferase HNDODLHM_00939 1120746.CCNL01000017_gene3207 1.74e-171 485.0 COG0462@1|root,COG0462@2|Bacteria,2NNP6@2323|unclassified Bacteria 2|Bacteria F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) prs GO:0003674,GO:0003824,GO:0004749,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016772,GO:0016778,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.6.1 ko:K00948 ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230 M00005 R01049 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - iAF987.Gmet_2848 Pribosyl_synth,Pribosyltran_N HNDODLHM_00940 457421.CBFG_05521 9.41e-67 224.0 28JZ6@1|root,2Z9PA@2|Bacteria,1UQ35@1239|Firmicutes,24F3U@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00941 1514668.JOOA01000002_gene2338 1.25e-85 258.0 COG0193@1|root,COG0193@2|Bacteria,1V3NB@1239|Firmicutes,24HMC@186801|Clostridia,3WIEP@541000|Ruminococcaceae 186801|Clostridia J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis pth - 3.1.1.29 ko:K01056 - - - - ko00000,ko01000,ko03012 - - - Pept_tRNA_hydro HNDODLHM_00942 428125.CLOLEP_00295 0.0 1330.0 COG1197@1|root,COG1197@2|Bacteria,1TPF1@1239|Firmicutes,248D8@186801|Clostridia,3WGVW@541000|Ruminococcaceae 186801|Clostridia L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site mfd - - ko:K03723 ko03420,map03420 - - - ko00000,ko00001,ko01000,ko03400 - - - CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF HNDODLHM_00945 1336241.JAEB01000008_gene1005 3.71e-11 60.1 COG4224@1|root,COG4224@2|Bacteria,1TUAX@1239|Firmicutes,24QS9@186801|Clostridia,25XPC@186806|Eubacteriaceae 186801|Clostridia S Bacterial protein of unknown function (DUF896) ynzC - - - - - - - - - - - DUF896 HNDODLHM_00946 1235800.C819_00683 9.13e-135 411.0 COG0249@1|root,COG0249@2|Bacteria,1V2NH@1239|Firmicutes,25DRU@186801|Clostridia,27KIH@186928|unclassified Lachnospiraceae 186801|Clostridia L ATPase domain of DNA mismatch repair MUTS family - - - - - - - - - - - - MutS_V HNDODLHM_00947 702450.CUW_1496 1.17e-91 282.0 COG0679@1|root,COG0679@2|Bacteria,1TR9W@1239|Firmicutes,3VPTK@526524|Erysipelotrichia 526524|Erysipelotrichia S Transporter, auxin efflux carrier (AEC) family protein - - - - - - - - - - - - Mem_trans HNDODLHM_00949 411463.EUBVEN_02321 1.12e-70 217.0 COG2426@1|root,COG2426@2|Bacteria,1V3UW@1239|Firmicutes,24HSW@186801|Clostridia,25WA3@186806|Eubacteriaceae 186801|Clostridia S small multi-drug export protein - - - - - - - - - - - - Sm_multidrug_ex HNDODLHM_00950 86416.Clopa_4831 3.55e-89 283.0 COG2081@1|root,COG2081@2|Bacteria,1TR7U@1239|Firmicutes,2497W@186801|Clostridia,36EA5@31979|Clostridiaceae 186801|Clostridia S HI0933 family - - - ko:K07007 - - - - ko00000 - - - HI0933_like HNDODLHM_00951 500633.CLOHIR_00722 8.07e-198 569.0 COG2509@1|root,COG2509@2|Bacteria,1TPBW@1239|Firmicutes,247TR@186801|Clostridia,25QFR@186804|Peptostreptococcaceae 186801|Clostridia S 'oxidoreductase - - - ko:K07137 - - - - ko00000 - - - HI0933_like,NAD_binding_8,Pyr_redox_2 HNDODLHM_00952 877420.ATVW01000027_gene110 2.18e-120 354.0 COG0451@1|root,COG0451@2|Bacteria,1TR3K@1239|Firmicutes,247U4@186801|Clostridia,27MXX@186928|unclassified Lachnospiraceae 186801|Clostridia GM NAD dependent epimerase/dehydratase family - - - - - - - - - - - - Epimerase HNDODLHM_00954 873513.HMPREF6485_0820 1.01e-142 453.0 COG0366@1|root,COG0366@2|Bacteria 2|Bacteria G hydrolase activity, hydrolyzing O-glycosyl compounds - - - - - - - - - - - - Alpha-amylase,CBM26,SLH HNDODLHM_00955 428125.CLOLEP_02820 1.13e-212 595.0 COG0281@1|root,COG0281@2|Bacteria,1TPJ3@1239|Firmicutes,2487U@186801|Clostridia,3WG9F@541000|Ruminococcaceae 186801|Clostridia C Malic enzyme, NAD binding domain - - 1.1.1.38 ko:K00027 ko00620,ko01200,ko02020,map00620,map01200,map02020 - R00214 RC00105 ko00000,ko00001,ko01000 - - - Malic_M,malic HNDODLHM_00956 483218.BACPEC_02993 6.06e-168 491.0 COG0765@1|root,COG0834@1|root,COG0765@2|Bacteria,COG0834@2|Bacteria,1TPM3@1239|Firmicutes,248UY@186801|Clostridia,268X5@186813|unclassified Clostridiales 186801|Clostridia E Psort location CytoplasmicMembrane, score ArtM - - ko:K02029,ko:K02030 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - BPD_transp_1,SBP_bac_3 HNDODLHM_00957 1304866.K413DRAFT_5141 2.06e-123 357.0 COG1126@1|root,COG1126@2|Bacteria,1TNYD@1239|Firmicutes,247QZ@186801|Clostridia,36E89@31979|Clostridiaceae 186801|Clostridia E ABC transporter glnQ - 3.6.3.21 ko:K02028 - M00236 - - ko00000,ko00002,ko01000,ko02000 3.A.1.3 - - ABC_tran HNDODLHM_00958 1410617.JHXH01000002_gene1777 3.97e-128 384.0 COG0617@1|root,COG0617@2|Bacteria,1TQ2A@1239|Firmicutes,247XC@186801|Clostridia,3WGBR@541000|Ruminococcaceae 186801|Clostridia J tRNA nucleotidyltransferase poly(A) polymerase cca - 2.7.7.19,2.7.7.72 ko:K00970,ko:K00974 ko03013,ko03018,map03013,map03018 - R09382,R09383,R09384,R09386 RC00078 ko00000,ko00001,ko01000,ko03016,ko03019 - - - HD,PolyA_pol,PolyA_pol_RNAbd,tRNA_NucTran2_2 HNDODLHM_00959 479437.Elen_1182 3.82e-230 671.0 COG0474@1|root,COG0474@2|Bacteria,2GJJC@201174|Actinobacteria,4CUZ9@84998|Coriobacteriia 84998|Coriobacteriia P E1-E2 ATPase - - - ko:K12952 - - - - ko00000,ko01000 3.A.3.23 - - E1-E2_ATPase,Hydrolase HNDODLHM_00961 1120746.CCNL01000010_gene1304 1.52e-54 177.0 COG0700@1|root,COG0700@2|Bacteria,2NPSZ@2323|unclassified Bacteria 2|Bacteria S Nucleoside recognition spmB - - ko:K06374 - - - - ko00000 - - - Gate HNDODLHM_00962 1105031.HMPREF1141_2072 1.71e-58 189.0 COG2715@1|root,COG2715@2|Bacteria,1V1E2@1239|Firmicutes,249G0@186801|Clostridia,36E11@31979|Clostridiaceae 186801|Clostridia S Spore maturation protein spmA - - ko:K06373 - - - - ko00000 - - - Gate HNDODLHM_00964 428125.CLOLEP_02917 3.22e-83 249.0 COG2131@1|root,COG2131@2|Bacteria,1V3PU@1239|Firmicutes,24HF0@186801|Clostridia,3WJ3A@541000|Ruminococcaceae 186801|Clostridia F MafB19-like deaminase comEB - 3.5.4.12 ko:K01493 ko00240,ko01100,map00240,map01100 M00429 R01663 RC00074 ko00000,ko00001,ko00002,ko01000,ko02044 - - - dCMP_cyt_deam_1 HNDODLHM_00965 633697.EubceDRAFT1_2619 3.3e-18 87.0 COG2091@1|root,COG2091@2|Bacteria,1VEYZ@1239|Firmicutes,24RQ3@186801|Clostridia,25XE5@186806|Eubacteriaceae 186801|Clostridia H 4'-phosphopantetheinyl transferase superfamily sfp - - ko:K06133 ko00770,map00770 - R01625 RC00002 ko00000,ko00001,ko01000 - - - ACPS HNDODLHM_00966 641112.ACOK01000112_gene2150 2.1e-59 190.0 COG1309@1|root,COG1309@2|Bacteria,1V73E@1239|Firmicutes,25B5N@186801|Clostridia,3WJEZ@541000|Ruminococcaceae 186801|Clostridia K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N HNDODLHM_00967 203119.Cthe_1480 0.0 885.0 COG1033@1|root,COG1033@2|Bacteria,1VSWA@1239|Firmicutes,247R6@186801|Clostridia,3WGDU@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - ko:K07003 - - - - ko00000 - - - MMPL HNDODLHM_00968 428125.CLOLEP_03047 1.98e-114 370.0 COG1511@1|root,COG1511@2|Bacteria,1TQ15@1239|Firmicutes,24A8K@186801|Clostridia,3WGGJ@541000|Ruminococcaceae 186801|Clostridia S Psort location Cellwall, score - - - ko:K01421 - - - - ko00000 - - - - HNDODLHM_00969 1235797.C816_00847 4.13e-30 108.0 2BX75@1|root,32YCI@2|Bacteria,1VEDY@1239|Firmicutes,24QPW@186801|Clostridia,2N7NG@216572|Oscillospiraceae 186801|Clostridia S Small, acid-soluble spore proteins, alpha/beta type - - - - - - - - - - - - SASP HNDODLHM_00970 1050201.KB913034_gene1249 1.68e-224 633.0 COG2865@1|root,COG2865@2|Bacteria,1U8FY@1239|Firmicutes,3VQ2U@526524|Erysipelotrichia 526524|Erysipelotrichia K Putative DNA-binding domain - - - - - - - - - - - - AlbA_2,HATPase_c_4 HNDODLHM_00971 469596.HMPREF9488_02231 1.23e-160 454.0 2DB6V@1|root,2Z7IJ@2|Bacteria,1TRNS@1239|Firmicutes,3VUMK@526524|Erysipelotrichia 526524|Erysipelotrichia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_00972 1256908.HMPREF0373_02178 5.45e-44 147.0 COG3451@1|root,COG3451@2|Bacteria,1V6F7@1239|Firmicutes,24JKK@186801|Clostridia,25WYM@186806|Eubacteriaceae 186801|Clostridia U PrgI family protein - - - - - - - - - - - - PrgI HNDODLHM_00973 1121115.AXVN01000009_gene1494 0.0 937.0 COG3451@1|root,COG3451@2|Bacteria,1TPDR@1239|Firmicutes,248ND@186801|Clostridia 186801|Clostridia U Psort location Cytoplasmic, score - - - - - - - - - - - - AAA_10,DUF87 HNDODLHM_00974 1321372.AQQB01000003_gene1507 1.24e-79 246.0 COG4509@1|root,COG4509@2|Bacteria,1TRWN@1239|Firmicutes,4HFQW@91061|Bacilli 91061|Bacilli S sortase, SrtB family srtB - 3.4.22.70 ko:K08600 - - - - ko00000,ko01000,ko01002,ko01011 - - - Sortase HNDODLHM_00975 1321372.AQQB01000051_gene1434 2.08e-55 198.0 COG0791@1|root,COG0791@2|Bacteria,1UKHZ@1239|Firmicutes,4HGJT@91061|Bacilli 91061|Bacilli M CHAP domain - - - - - - - - - - - - CHAP HNDODLHM_00976 411468.CLOSCI_01980 3.04e-09 57.8 COG2088@1|root,COG2088@2|Bacteria,1V9ZG@1239|Firmicutes,24MVQ@186801|Clostridia,220FJ@1506553|Lachnoclostridium 186801|Clostridia D Could be involved in septation spoVG - - ko:K06412 - - - - ko00000 - - - SpoVG HNDODLHM_00979 742735.HMPREF9467_02752 2.62e-100 304.0 COG0338@1|root,COG0338@2|Bacteria,1UBIY@1239|Firmicutes,248RN@186801|Clostridia,220NY@1506553|Lachnoclostridium 186801|Clostridia L COG COG0338 Site-specific DNA methylase dam - 2.1.1.72 ko:K06223 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko02048,ko03032,ko03400 - - - MethyltransfD12 HNDODLHM_00980 1160721.RBI_II00604 5.37e-65 216.0 COG0270@1|root,COG0270@2|Bacteria,1TS3G@1239|Firmicutes,249Q9@186801|Clostridia,3WH3U@541000|Ruminococcaceae 186801|Clostridia H Psort location Cytoplasmic, score dcm - 2.1.1.37 ko:K00558 ko00270,ko01100,ko05206,map00270,map01100,map05206 M00035 R04858 RC00003,RC00332 ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036 - - - DNA_methylase HNDODLHM_00981 697329.Rumal_1386 2.85e-82 257.0 COG0270@1|root,COG0270@2|Bacteria,1TS3G@1239|Firmicutes,249Q9@186801|Clostridia,3WH3U@541000|Ruminococcaceae 186801|Clostridia H Psort location Cytoplasmic, score dcm - 2.1.1.37 ko:K00558 ko00270,ko01100,ko05206,map00270,map01100,map05206 M00035 R04858 RC00003,RC00332 ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036 - - - DNA_methylase HNDODLHM_00982 411902.CLOBOL_04119 5.29e-36 125.0 COG2105@1|root,COG2105@2|Bacteria,1VGQA@1239|Firmicutes,25MCJ@186801|Clostridia,221G7@1506553|Lachnoclostridium 186801|Clostridia S Domain of unknown function (DUF4314) - - - - - - - - - - - - DUF4314 HNDODLHM_00987 428125.CLOLEP_02625 1.93e-204 594.0 COG0488@1|root,COG0488@2|Bacteria,1TPAX@1239|Firmicutes,247U6@186801|Clostridia,3WGHX@541000|Ruminococcaceae 186801|Clostridia S ABC transporter - - - ko:K06158 - - - - ko00000,ko03012 - - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn HNDODLHM_00989 1123263.AUKY01000003_gene284 8.41e-19 80.9 2CF79@1|root,32RHV@2|Bacteria,1V7CD@1239|Firmicutes 1239|Firmicutes S Protein of unknown function (DUF1292) - - - - - - - - - - - - DUF1292 HNDODLHM_00990 428125.CLOLEP_02423 8.39e-39 130.0 2E6AD@1|root,330Y9@2|Bacteria,1VGZN@1239|Firmicutes,2589N@186801|Clostridia,3WM9E@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - - HNDODLHM_00991 411463.EUBVEN_01180 1.36e-114 342.0 COG1609@1|root,COG1609@2|Bacteria,1TPZJ@1239|Firmicutes,248K0@186801|Clostridia,25VZC@186806|Eubacteriaceae 186801|Clostridia K Psort location Cytoplasmic, score - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 HNDODLHM_00992 748224.HMPREF9436_00728 3.19e-151 429.0 COG0730@1|root,COG0730@2|Bacteria,1TRFG@1239|Firmicutes,24AEX@186801|Clostridia,3WH0U@541000|Ruminococcaceae 186801|Clostridia S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE HNDODLHM_00993 1506994.JNLQ01000003_gene3793 5.28e-110 329.0 28JAP@1|root,2Z95J@2|Bacteria,1V602@1239|Firmicutes,24C5F@186801|Clostridia,4C1RS@830|Butyrivibrio 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_00997 1395513.P343_05730 7.02e-38 129.0 COG1943@1|root,COG1943@2|Bacteria,1TSQ0@1239|Firmicutes,4HDZ0@91061|Bacilli 91061|Bacilli L COG1943 Transposase and inactivated derivatives isplu5A - - ko:K07491 - - - - ko00000 - - - Y1_Tnp HNDODLHM_00999 1507.HMPREF0262_00681 1.2e-108 331.0 COG0687@1|root,COG0687@2|Bacteria,1TPY1@1239|Firmicutes,2483K@186801|Clostridia,36DK4@31979|Clostridiaceae 186801|Clostridia P Spermidine putrescine-binding periplasmic protein potD - - ko:K11069,ko:K11070 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.1 - - BPD_transp_1,SBP_bac_6,SBP_bac_8 HNDODLHM_01000 1120746.CCNL01000011_gene1906 5.63e-86 264.0 COG1177@1|root,COG1177@2|Bacteria,2NPND@2323|unclassified Bacteria 2|Bacteria E Binding-protein-dependent transport system inner membrane component potC - - ko:K11070 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.1 - - BPD_transp_1,SBP_bac_8 HNDODLHM_01001 1105031.HMPREF1141_0440 8.11e-88 269.0 COG1176@1|root,COG1176@2|Bacteria,1TQ7Z@1239|Firmicutes,247Y8@186801|Clostridia,36EF3@31979|Clostridiaceae 186801|Clostridia P ABC-type spermidine putrescine transport system, permease component I potB - - ko:K11071 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.1 - - BPD_transp_1 HNDODLHM_01002 537013.CLOSTMETH_03656 2.43e-162 474.0 COG3842@1|root,COG3842@2|Bacteria,1TP2M@1239|Firmicutes,247JR@186801|Clostridia,3WGI6@541000|Ruminococcaceae 186801|Clostridia P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system potA - 3.6.3.31 ko:K11072 ko02010,map02010 M00299 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.11.1 - - ABC_tran,TOBE_2 HNDODLHM_01003 1216932.CM240_0788 1.19e-86 315.0 COG0366@1|root,COG0860@1|root,COG3664@1|root,COG0366@2|Bacteria,COG0860@2|Bacteria,COG3664@2|Bacteria,1TQSE@1239|Firmicutes,24C4V@186801|Clostridia,36GZS@31979|Clostridiaceae 186801|Clostridia G Belongs to the glycosyl hydrolase 13 family - - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,Big_2,CBM26,CBM53,CW_binding_1,Y_Y_Y HNDODLHM_01005 1120746.CCNL01000011_gene1572 9.98e-112 335.0 COG1077@1|root,COG1077@2|Bacteria,2NNVU@2323|unclassified Bacteria 2|Bacteria D MreB/Mbl protein mbl - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl HNDODLHM_01006 1105031.HMPREF1141_0832 1.52e-42 150.0 COG1040@1|root,COG1040@2|Bacteria,1VF2G@1239|Firmicutes,24IG6@186801|Clostridia,36IPK@31979|Clostridiaceae 186801|Clostridia S ComF family comF - - ko:K02242 - M00429 - - ko00000,ko00002,ko02044 - - - Pribosyltran HNDODLHM_01007 428125.CLOLEP_01537 1.54e-285 808.0 COG0507@1|root,COG0507@2|Bacteria,1TPZH@1239|Firmicutes,247R7@186801|Clostridia,3WGP3@541000|Ruminococcaceae 186801|Clostridia L DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity recD2 - 3.1.11.5 ko:K03581 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - AAA_30,HHH_4,HHH_5,UvrD_C_2 HNDODLHM_01008 428125.CLOLEP_00456 3.15e-66 212.0 COG3442@1|root,COG3442@2|Bacteria,1U7I9@1239|Firmicutes,24A80@186801|Clostridia,3WKVW@541000|Ruminococcaceae 186801|Clostridia S glutamine amidotransferase - - - ko:K07009 - - - - ko00000 - - - GATase_3 HNDODLHM_01009 428125.CLOLEP_00455 3.1e-193 549.0 COG0769@1|root,COG0769@2|Bacteria,1UHY9@1239|Firmicutes,25E6X@186801|Clostridia,3WHF5@541000|Ruminococcaceae 186801|Clostridia M Domain of unknown function (DUF1727) - - - - - - - - - - - - DUF1727,Mur_ligase_M HNDODLHM_01011 537013.CLOSTMETH_00769 1.13e-67 215.0 COG3764@1|root,COG3764@2|Bacteria,1V9CM@1239|Firmicutes,24UPX@186801|Clostridia,3WMIS@541000|Ruminococcaceae 186801|Clostridia M Sortase family - - 3.4.22.70 ko:K07284 - - - - ko00000,ko01000,ko01002,ko01011 - - - Sortase HNDODLHM_01013 1121334.KB911077_gene2461 2.33e-99 297.0 COG0084@1|root,COG0084@2|Bacteria,1TNY1@1239|Firmicutes,248HE@186801|Clostridia,3WGAW@541000|Ruminococcaceae 186801|Clostridia L Hydrolase, TatD family tatD - - ko:K03424 - - - - ko00000,ko01000 - - - TatD_DNase HNDODLHM_01014 1160721.RBI_I01468 0.0 1049.0 COG0073@1|root,COG0143@1|root,COG0073@2|Bacteria,COG0143@2|Bacteria,1TPA1@1239|Firmicutes,248AU@186801|Clostridia,3WGEI@541000|Ruminococcaceae 186801|Clostridia J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation metG - 6.1.1.10 ko:K01874 ko00450,ko00970,map00450,map00970 M00359,M00360 R03659,R04773 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1g,tRNA_bind HNDODLHM_01015 483218.BACPEC_00627 6.13e-222 624.0 COG0733@1|root,COG0733@2|Bacteria,1TP6B@1239|Firmicutes,2485D@186801|Clostridia,268FU@186813|unclassified Clostridiales 186801|Clostridia S Sodium:neurotransmitter symporter family - - - ko:K03308 - - - - ko00000 2.A.22.4,2.A.22.5 - - SNF HNDODLHM_01016 1160721.RBI_I00452 2.78e-246 684.0 COG2873@1|root,COG2873@2|Bacteria,1VYCY@1239|Firmicutes,247XK@186801|Clostridia,3WGNF@541000|Ruminococcaceae 186801|Clostridia E O-acetylhomoserine metY - 2.5.1.49 ko:K01740 ko00270,ko01100,map00270,map01100 - R01287,R04859 RC00020,RC02821,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP HNDODLHM_01017 1160721.RBI_I00675 1.68e-160 456.0 COG0031@1|root,COG0031@2|Bacteria,1TP30@1239|Firmicutes,2497G@186801|Clostridia,3WG9Z@541000|Ruminococcaceae 186801|Clostridia E Belongs to the cysteine synthase cystathionine beta- synthase family cysK - 2.5.1.47 ko:K01738 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03601,R04859 RC00020,RC02814,RC02821 ko00000,ko00001,ko00002,ko01000 - - - PALP HNDODLHM_01018 246199.CUS_7705 1.87e-71 222.0 COG0135@1|root,COG0135@2|Bacteria,1V6Y0@1239|Firmicutes,24HBQ@186801|Clostridia,3WM7Q@541000|Ruminococcaceae 186801|Clostridia E N-(5'phosphoribosyl)anthranilate (PRA) isomerase trpF - 5.3.1.24 ko:K01817 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03509 RC00945 ko00000,ko00001,ko00002,ko01000 - - - PRAI HNDODLHM_01019 428125.CLOLEP_00519 2.95e-42 140.0 COG0360@1|root,COG0360@2|Bacteria,1VA18@1239|Firmicutes,24QZQ@186801|Clostridia,3WK85@541000|Ruminococcaceae 186801|Clostridia J Binds together with S18 to 16S ribosomal RNA rpsF - - ko:K02990 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S6 HNDODLHM_01020 1121334.KB911069_gene1617 2.25e-50 166.0 COG0629@1|root,COG0629@2|Bacteria,1V3WT@1239|Firmicutes,24HF9@186801|Clostridia,3WJAP@541000|Ruminococcaceae 186801|Clostridia L Single-stranded DNA-binding protein ssb - - ko:K03111 ko03030,ko03430,ko03440,map03030,map03430,map03440 - - - ko00000,ko00001,ko03029,ko03032,ko03400 - - - SSB HNDODLHM_01021 537013.CLOSTMETH_00061 2.35e-39 131.0 COG0238@1|root,COG0238@2|Bacteria,1V9XS@1239|Firmicutes,24MQV@186801|Clostridia,3WJU7@541000|Ruminococcaceae 186801|Clostridia J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit rpsR - - ko:K02963 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S18 HNDODLHM_01022 457412.RSAG_02440 1.27e-46 150.0 COG3077@1|root,COG3077@2|Bacteria,1VABY@1239|Firmicutes,24PQZ@186801|Clostridia,3WKWU@541000|Ruminococcaceae 186801|Clostridia L RelB antitoxin - - - ko:K07473 - - - - ko00000,ko02048 - - - RelB HNDODLHM_01023 457412.RSAG_02439 3.18e-50 160.0 COG3041@1|root,COG3041@2|Bacteria,1TUTV@1239|Firmicutes,25NAT@186801|Clostridia,3WQD7@541000|Ruminococcaceae 186801|Clostridia S Bacterial toxin of type II toxin-antitoxin system, YafQ - - - ko:K19157 - - - - ko00000,ko01000,ko02048 - - - YafQ_toxin HNDODLHM_01024 411462.DORLON_02320 1.21e-47 154.0 COG1937@1|root,COG1937@2|Bacteria,1VEF5@1239|Firmicutes,24QRR@186801|Clostridia,27VQM@189330|Dorea 186801|Clostridia S Metal-sensitive transcriptional repressor csoR - - ko:K21600 - - - - ko00000,ko03000 - - - Trns_repr_metal HNDODLHM_01025 478749.BRYFOR_08890 0.0 1115.0 COG2217@1|root,COG2217@2|Bacteria,1TP5S@1239|Firmicutes,247MW@186801|Clostridia 186801|Clostridia P ATPase, P-type (transporting), HAD superfamily, subfamily IC actP - 3.6.3.4,3.6.3.54 ko:K01533,ko:K17686 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5 - - E1-E2_ATPase,HMA,Hydrolase HNDODLHM_01026 1120746.CCNL01000011_gene1810 8.58e-36 124.0 2DG94@1|root,337GI@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - HNDODLHM_01027 641112.ACOK01000101_gene411 5.55e-37 125.0 COG4472@1|root,COG4472@2|Bacteria,1VAC4@1239|Firmicutes,24QVQ@186801|Clostridia,3WJXE@541000|Ruminococcaceae 186801|Clostridia S Belongs to the UPF0297 family yrzL - - - - - - - - - - - DUF965 HNDODLHM_01028 1408312.JNJS01000001_gene1466 0.0 1083.0 COG0072@1|root,COG0072@2|Bacteria,1TP98@1239|Firmicutes,248BJ@186801|Clostridia,3NGHV@46205|Pseudobutyrivibrio 186801|Clostridia J B3/4 domain pheT - 6.1.1.20 ko:K01890 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - B3_4,B5,FDX-ACB,tRNA_bind HNDODLHM_01029 1514668.JOOA01000002_gene1723 1.58e-192 541.0 COG0016@1|root,COG0016@2|Bacteria,1TPFW@1239|Firmicutes,2486E@186801|Clostridia,3WGWV@541000|Ruminococcaceae 186801|Clostridia J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily pheS - 6.1.1.20 ko:K01889 ko00970,map00970 M00359,M00360 R03660 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Phe_tRNA-synt_N,tRNA-synt_2d HNDODLHM_01031 1120746.CCNL01000011_gene1801 4.51e-71 234.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,2NNR2@2323|unclassified Bacteria 2|Bacteria G Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - 4.2.1.136,5.1.99.6 ko:K17758,ko:K17759 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N HNDODLHM_01032 585394.RHOM_10260 1.1e-46 164.0 COG0577@1|root,COG0577@2|Bacteria,1TRAS@1239|Firmicutes,248SQ@186801|Clostridia 186801|Clostridia V Psort location CytoplasmicMembrane, score - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD HNDODLHM_01033 585394.RHOM_10255 2.34e-93 272.0 COG1595@1|root,COG1595@2|Bacteria,1UVHM@1239|Firmicutes,24DWE@186801|Clostridia 186801|Clostridia K Psort location Cytoplasmic, score - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r4_2 HNDODLHM_01035 585394.RHOM_10245 0.0 1107.0 COG1961@1|root,COG1961@2|Bacteria,1TPA6@1239|Firmicutes,247KF@186801|Clostridia 186801|Clostridia L Psort location Cytoplasmic, score - - - - - - - - - - - - DUF4368,Recombinase,Resolvase,Zn_ribbon_recom HNDODLHM_01038 585394.RHOM_15545 2.17e-266 731.0 COG3328@1|root,COG3328@2|Bacteria,1TP4C@1239|Firmicutes,248UI@186801|Clostridia 186801|Clostridia L PFAM transposase, mutator - - - - - - - - - - - - Transposase_mut HNDODLHM_01039 1341157.RF007C_16235 3.08e-89 266.0 COG5340@1|root,COG5340@2|Bacteria,1TQSK@1239|Firmicutes,247JC@186801|Clostridia,3WJYZ@541000|Ruminococcaceae 186801|Clostridia K Transcriptional regulator, AbiEi antitoxin - - - - - - - - - - - - AbiEi_4 HNDODLHM_01040 1341157.RF007C_16240 2.87e-127 370.0 COG2253@1|root,COG2253@2|Bacteria,1TSFX@1239|Firmicutes,24C3A@186801|Clostridia,3WJ2E@541000|Ruminococcaceae 186801|Clostridia S Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - - - - - - - - - - AbiEii HNDODLHM_01044 428125.CLOLEP_01990 8.73e-176 510.0 COG0697@1|root,COG0697@2|Bacteria,1TP7K@1239|Firmicutes,248Q8@186801|Clostridia,3WHDF@541000|Ruminococcaceae 186801|Clostridia EG spore germination protein - - - ko:K06295 - - - - ko00000 - - - GerA HNDODLHM_01047 1105031.HMPREF1141_2304 9.02e-18 74.7 COG0230@1|root,COG0230@2|Bacteria,1VK90@1239|Firmicutes,24UGN@186801|Clostridia,36P8G@31979|Clostridiaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bL34 family rpmH - - ko:K02914 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L34 HNDODLHM_01048 428125.CLOLEP_01265 1.37e-38 132.0 COG0594@1|root,COG0594@2|Bacteria,1VA78@1239|Firmicutes,24QK5@186801|Clostridia,3WKGV@541000|Ruminococcaceae 186801|Clostridia J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme rnpA - 3.1.26.5 ko:K03536 - - - - ko00000,ko01000,ko03016 - - - Ribonuclease_P HNDODLHM_01049 428125.CLOLEP_01266 2.43e-35 121.0 COG0759@1|root,COG0759@2|Bacteria,1VEIG@1239|Firmicutes,24QN4@186801|Clostridia,3WKGN@541000|Ruminococcaceae 186801|Clostridia S Could be involved in insertion of integral membrane proteins into the membrane yidD - - ko:K08998 - - - - ko00000 - - - Haemolytic HNDODLHM_01050 428125.CLOLEP_01267 8.27e-81 256.0 COG0706@1|root,COG0706@2|Bacteria,1TQ0J@1239|Firmicutes,247V9@186801|Clostridia,3WHYT@541000|Ruminococcaceae 186801|Clostridia U Membrane protein insertase, YidC Oxa1 family yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP HNDODLHM_01051 428125.CLOLEP_01268 1.19e-91 280.0 COG1847@1|root,COG1847@2|Bacteria,1V3IN@1239|Firmicutes,249EA@186801|Clostridia,3WHR4@541000|Ruminococcaceae 186801|Clostridia S R3H domain protein jag - - ko:K06346 - - - - ko00000 - - - Jag_N,KH_4,R3H HNDODLHM_01052 428125.CLOLEP_01269 3.87e-196 559.0 COG0486@1|root,COG0486@2|Bacteria,1TPJF@1239|Firmicutes,248A9@186801|Clostridia,3WGHG@541000|Ruminococcaceae 186801|Clostridia S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 mnmE - - ko:K03650 - - R08701 RC00053,RC00209,RC00870 ko00000,ko01000,ko03016 - - - MMR_HSR1,MnmE_helical,TrmE_N HNDODLHM_01053 428125.CLOLEP_01270 0.0 958.0 COG0445@1|root,COG0445@2|Bacteria,1TQ4B@1239|Firmicutes,247U2@186801|Clostridia,3WGGQ@541000|Ruminococcaceae 186801|Clostridia D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 gidA - - ko:K03495 - - R08701 RC00053,RC00209,RC00870 ko00000,ko03016,ko03036 - - - GIDA,GIDA_assoc HNDODLHM_01054 484770.UFO1_4489 1.25e-86 263.0 COG0357@1|root,COG0357@2|Bacteria,1TPBT@1239|Firmicutes,4H2EW@909932|Negativicutes 909932|Negativicutes J Specifically methylates the N7 position of a guanine in 16S rRNA rsmG - 2.1.1.170 ko:K03501 - - - - ko00000,ko01000,ko03009,ko03036 - - - GidB HNDODLHM_01055 428125.CLOLEP_01273 1.62e-95 289.0 COG1475@1|root,COG1475@2|Bacteria,1TP0I@1239|Firmicutes,2488X@186801|Clostridia,3WINS@541000|Ruminococcaceae 186801|Clostridia K Belongs to the ParB family noc - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc HNDODLHM_01056 428125.CLOLEP_03274 1.21e-108 321.0 COG2201@1|root,COG2201@2|Bacteria,1VQS3@1239|Firmicutes,25E3X@186801|Clostridia,3WGU4@541000|Ruminococcaceae 186801|Clostridia NT May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process spo0A - - ko:K03413,ko:K07699 ko02020,ko02024,ko02030,map02020,map02024,map02030 M00485,M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - Response_reg,Spo0A_C HNDODLHM_01057 1120746.CCNL01000011_gene1811 1.27e-224 628.0 COG0151@1|root,COG0151@2|Bacteria,2NP0B@2323|unclassified Bacteria 2|Bacteria F Belongs to the GARS family purD - 6.3.2.6,6.3.4.13 ko:K01945,ko:K13713 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04144,R04591 RC00064,RC00090,RC00162,RC00166 ko00000,ko00001,ko00002,ko01000 - - - GARS_A,GARS_C,GARS_N HNDODLHM_01058 1122931.AUAE01000009_gene4706 2.33e-239 663.0 COG0138@1|root,COG0138@2|Bacteria,4NIY8@976|Bacteroidetes,2FMYP@200643|Bacteroidia 976|Bacteroidetes F AICARFT IMPCHase bienzyme purH2 - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas HNDODLHM_01059 1160721.RBI_II00077 4.78e-129 371.0 COG3363@1|root,COG3363@2|Bacteria,1TRA7@1239|Firmicutes,249ZW@186801|Clostridia,3WGGF@541000|Ruminococcaceae 186801|Clostridia F IMP cyclohydrolase-like protein - - - - - - - - - - - - IMP_cyclohyd HNDODLHM_01060 428125.CLOLEP_02079 4.6e-96 285.0 COG0299@1|root,COG0299@2|Bacteria,1V3RJ@1239|Firmicutes,249JC@186801|Clostridia,3WIAG@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate purN - 2.1.2.2 ko:K11175 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS04225 Formyl_trans_N HNDODLHM_01061 428125.CLOLEP_02078 4.27e-185 521.0 COG0150@1|root,COG0150@2|Bacteria,1TP9J@1239|Firmicutes,248BT@186801|Clostridia,3WHKH@541000|Ruminococcaceae 186801|Clostridia F Phosphoribosylformylglycinamidine cyclo-ligase purM - 6.3.3.1 ko:K01933 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04208 RC01100 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C HNDODLHM_01062 428125.CLOLEP_02077 2.29e-170 495.0 COG0034@1|root,COG0034@2|Bacteria,1TPH3@1239|Firmicutes,247RF@186801|Clostridia,3WH6T@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_6,GATase_7,Pribosyltran HNDODLHM_01063 1160721.RBI_II00083 6.72e-75 228.0 COG0041@1|root,COG0041@2|Bacteria,1V1MV@1239|Firmicutes,24HCB@186801|Clostridia,3WITM@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) purE - 5.4.99.18 ko:K01588 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R07405 RC01947 ko00000,ko00001,ko00002,ko01000 - - - AIRC HNDODLHM_01064 1235800.C819_01113 4.16e-77 256.0 COG4905@1|root,COG4905@2|Bacteria,1TQUM@1239|Firmicutes,25CKD@186801|Clostridia,27J1N@186928|unclassified Lachnospiraceae 186801|Clostridia S Putative ABC-transporter type IV - - - - - - - - - - - - ABC_trans_CmpB HNDODLHM_01065 428125.CLOLEP_02073 1.44e-105 315.0 COG0330@1|root,COG0330@2|Bacteria,1TPXU@1239|Firmicutes,248MP@186801|Clostridia,3WH9Z@541000|Ruminococcaceae 186801|Clostridia O SPFH Band 7 PHB domain protein qmcA - - - - - - - - - - - Band_7 HNDODLHM_01066 411469.EUBHAL_02567 2.33e-234 657.0 COG2211@1|root,COG2211@2|Bacteria,1TRA5@1239|Firmicutes,247VA@186801|Clostridia,25ZNV@186806|Eubacteriaceae 186801|Clostridia G Vacuole effluxer Atg22 like lacS - - ko:K03292,ko:K11104,ko:K16209 - - - - ko00000,ko02000 2.A.2,2.A.2.1,2.A.2.2 - - MFS_2 HNDODLHM_01067 1123075.AUDP01000038_gene223 1.32e-189 540.0 COG0153@1|root,COG0153@2|Bacteria,1TPD0@1239|Firmicutes,247U8@186801|Clostridia,3WHNU@541000|Ruminococcaceae 186801|Clostridia G Belongs to the GHMP kinase family galK - 2.7.1.6 ko:K00849 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00554,M00632 R01092 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000,ko04147 - - - GHMP_kinases_C,GHMP_kinases_N,GalKase_gal_bdg HNDODLHM_01068 1232447.BAHW02000028_gene2239 2.28e-196 549.0 COG1087@1|root,COG1087@2|Bacteria,1TQ7N@1239|Firmicutes,247M9@186801|Clostridia,2689A@186813|unclassified Clostridiales 186801|Clostridia M Belongs to the NAD(P)-dependent epimerase dehydratase family galE - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase,GDP_Man_Dehyd HNDODLHM_01069 1235800.C819_03632 1.75e-234 660.0 COG4468@1|root,COG4468@2|Bacteria,1TPBN@1239|Firmicutes,247ZN@186801|Clostridia,27IHX@186928|unclassified Lachnospiraceae 186801|Clostridia G Galactose-1-phosphate uridyl transferase, C-terminal domain galT - 2.7.7.12 ko:K00965 ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917 M00362,M00554,M00632 R00955 RC00002 ko00000,ko00001,ko00002,ko01000 - - - GalP_UDP_tr_C,GalP_UDP_transf HNDODLHM_01070 1345695.CLSA_c07460 3.2e-99 304.0 COG2017@1|root,COG2017@2|Bacteria,1TQGJ@1239|Firmicutes,249DZ@186801|Clostridia,36F59@31979|Clostridiaceae 186801|Clostridia G Converts alpha-aldose to the beta-anomer mro - 5.1.3.3 ko:K01785 ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130 M00632 R01602,R10619 RC00563 ko00000,ko00001,ko00002,ko01000 - - - Aldose_epim HNDODLHM_01071 1449050.JNLE01000003_gene2028 1.07e-218 647.0 COG0366@1|root,COG3291@1|root,COG0366@2|Bacteria,COG3291@2|Bacteria,1V0U1@1239|Firmicutes,24ZQ4@186801|Clostridia 186801|Clostridia G Alpha amylase, catalytic domain - - - - - - - - - - - - Alpha-amylase HNDODLHM_01072 1121935.AQXX01000121_gene5516 1.58e-07 63.5 COG0366@1|root,COG1523@1|root,COG0366@2|Bacteria,COG1523@2|Bacteria,1MU90@1224|Proteobacteria,1RQ1S@1236|Gammaproteobacteria,1XN5H@135619|Oceanospirillales 135619|Oceanospirillales G Alpha-amylase domain - - - - - - - - - - - - Alpha-amylase HNDODLHM_01073 428125.CLOLEP_03258 6.4e-207 586.0 COG2256@1|root,COG2256@2|Bacteria,1TPVV@1239|Firmicutes,247X2@186801|Clostridia,3WGT0@541000|Ruminococcaceae 186801|Clostridia L ATPase, AAA family yrvN - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N HNDODLHM_01074 1151292.QEW_3406 4.4e-53 201.0 COG2247@1|root,COG4870@1|root,COG2247@2|Bacteria,COG4870@2|Bacteria,1TVCW@1239|Firmicutes,25B7E@186801|Clostridia,25S9K@186804|Peptostreptococcaceae 186801|Clostridia M Papain family cysteine protease - - - - - - - - - - - - Beta_helix,Big_2,CW_binding_2,Flg_new,Peptidase_C1 HNDODLHM_01075 428125.CLOLEP_02521 6.71e-108 322.0 COG0680@1|root,COG0680@2|Bacteria,1TPFY@1239|Firmicutes,248TE@186801|Clostridia,3WGVA@541000|Ruminococcaceae 186801|Clostridia C Initiates the rapid degradation of small, acid-soluble proteins during spore germination gpr - 3.4.24.78 ko:K06012 - - - - ko00000,ko01000,ko01002 - - - Peptidase_A25 HNDODLHM_01076 428125.CLOLEP_02523 7.81e-82 261.0 COG0860@1|root,COG0860@2|Bacteria,1TSFS@1239|Firmicutes,2488U@186801|Clostridia,3WGV1@541000|Ruminococcaceae 186801|Clostridia M stage II sporulation protein P spoIIP - - ko:K06385 - - - - ko00000 - - - SpoIIP HNDODLHM_01077 1304866.K413DRAFT_3568 6.06e-189 542.0 COG0168@1|root,COG0168@2|Bacteria,1TPAF@1239|Firmicutes,248K4@186801|Clostridia,36E52@31979|Clostridiaceae 186801|Clostridia P potassium uptake protein TrkH trkH - - ko:K03498 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkH HNDODLHM_01078 445971.ANASTE_00447 1.9e-150 442.0 COG0569@1|root,COG0569@2|Bacteria,1TPNS@1239|Firmicutes,24830@186801|Clostridia,25V3H@186806|Eubacteriaceae 186801|Clostridia P Potassium transporter peripheral membrane component trkA - - ko:K03499 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkA_C,TrkA_N HNDODLHM_01079 1507.HMPREF0262_00390 3.15e-258 716.0 COG0493@1|root,COG0493@2|Bacteria,1TQ1A@1239|Firmicutes,248EK@186801|Clostridia,36E1P@31979|Clostridiaceae 186801|Clostridia C glutamate synthase (NADPH), homotetrameric gltA - 1.17.1.9,1.4.1.13,1.4.1.14 ko:K00123,ko:K00266 ko00250,ko00630,ko00680,ko00910,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00250,map00630,map00680,map00910,map01100,map01110,map01120,map01130,map01200,map01230 - R00093,R00114,R00248,R00519 RC00006,RC00010,RC02796,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 HNDODLHM_01080 1392493.JIAB01000001_gene1271 3.62e-156 443.0 COG0543@1|root,COG0543@2|Bacteria,1TP6D@1239|Firmicutes,247YB@186801|Clostridia,27IU1@186928|unclassified Lachnospiraceae 186801|Clostridia CH Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B nfnA - 1.18.1.2,1.19.1.1 ko:K00528,ko:K16951 ko00920,ko01120,map00920,map01120 - R00858,R10146,R10159 RC00065 ko00000,ko00001,ko01000 - - - DHODB_Fe-S_bind,NAD_binding_1 HNDODLHM_01081 665956.HMPREF1032_02832 1.56e-145 419.0 COG0039@1|root,COG0039@2|Bacteria,1TPSY@1239|Firmicutes,248DH@186801|Clostridia,3WH12@541000|Ruminococcaceae 186801|Clostridia C Belongs to the LDH MDH superfamily. LDH family ldh - 1.1.1.27 ko:K00016 ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922 - R00703,R01000,R03104 RC00031,RC00044 ko00000,ko00001,ko01000,ko04147 - - - Ldh_1_C,Ldh_1_N HNDODLHM_01082 478749.BRYFOR_05754 8.54e-80 243.0 COG1971@1|root,COG1971@2|Bacteria,1V4QK@1239|Firmicutes,24FY0@186801|Clostridia 186801|Clostridia P Probably functions as a manganese efflux pump mntP - - - - - - - - - - - Mntp HNDODLHM_01083 742765.HMPREF9457_02977 1.49e-26 109.0 COG0664@1|root,COG0664@2|Bacteria,1TSP9@1239|Firmicutes,24FRD@186801|Clostridia,27WBF@189330|Dorea 186801|Clostridia K COG COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - - - - - - - - - - HTH_Crp_2,cNMP_binding HNDODLHM_01086 1235793.C809_03093 2.32e-29 107.0 COG2026@1|root,COG2026@2|Bacteria,1VCRD@1239|Firmicutes,25K0W@186801|Clostridia,27Q6W@186928|unclassified Lachnospiraceae 186801|Clostridia DJ ParE toxin of type II toxin-antitoxin system, parDE - - - - - - - - - - - - ParE_toxin HNDODLHM_01087 411483.FAEPRAA2165_00683 2.1e-19 80.9 2CBNP@1|root,33J1I@2|Bacteria,1VP33@1239|Firmicutes,24WEX@186801|Clostridia,3WQQK@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01088 1105031.HMPREF1141_1862 0.0 1139.0 COG1185@1|root,COG1185@2|Bacteria,1TQDW@1239|Firmicutes,248RW@186801|Clostridia,36DDN@31979|Clostridiaceae 186801|Clostridia J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction pnp - 2.7.7.8 ko:K00962 ko00230,ko00240,ko03018,map00230,map00240,map03018 M00394 R00437,R00438,R00439,R00440 RC02795 ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - KH_1,PNPase,RNase_PH,RNase_PH_C,S1 HNDODLHM_01089 428125.CLOLEP_01061 1.78e-47 152.0 COG0184@1|root,COG0184@2|Bacteria,1VA5C@1239|Firmicutes,24MRM@186801|Clostridia,3WK6U@541000|Ruminococcaceae 186801|Clostridia J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome rpsO - - ko:K02956 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S15 HNDODLHM_01090 1408823.AXUS01000011_gene2015 4.04e-09 60.1 COG1476@1|root,COG1476@2|Bacteria,1V8IM@1239|Firmicutes,24AZ2@186801|Clostridia 186801|Clostridia K Helix-turn-helix - - - - - - - - - - - - HTH_3 HNDODLHM_01091 1336241.JAEB01000005_gene1441 1.18e-157 451.0 COG0119@1|root,COG0119@2|Bacteria,1TS0A@1239|Firmicutes,247MU@186801|Clostridia,25V7F@186806|Eubacteriaceae 186801|Clostridia E HMGL-like - - 4.1.3.39 ko:K01666 ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220 M00545,M00569 R00750 RC00307,RC00371 br01602,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like HNDODLHM_01092 1160721.RBI_I00681 4.93e-158 450.0 COG0284@1|root,COG0284@2|Bacteria,1TQ7P@1239|Firmicutes,247SZ@186801|Clostridia,3WH6X@541000|Ruminococcaceae 186801|Clostridia F Belongs to the OMP decarboxylase family. Type 2 subfamily pyrF - 4.1.1.23 ko:K01591 ko00240,ko01100,map00240,map01100 M00051 R00965 RC00409 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS17585 OMPdecase HNDODLHM_01093 428125.CLOLEP_03881 9.7e-211 588.0 COG1932@1|root,COG1932@2|Bacteria,1TP6Y@1239|Firmicutes,247SM@186801|Clostridia,3WGD1@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine serC - 2.6.1.52 ko:K00831 ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230 M00020,M00124 R04173,R05085 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_5 HNDODLHM_01094 428125.CLOLEP_03880 7.53e-162 466.0 COG0111@1|root,COG0111@2|Bacteria,1V410@1239|Firmicutes,248H9@186801|Clostridia,3WGQB@541000|Ruminococcaceae 186801|Clostridia EH D-isomer specific 2-hydroxyacid dehydrogenase pdxB - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C HNDODLHM_01095 537013.CLOSTMETH_03813 2.23e-116 355.0 COG0534@1|root,COG0534@2|Bacteria,1TPPJ@1239|Firmicutes,25AZE@186801|Clostridia,3WH9E@541000|Ruminococcaceae 186801|Clostridia V Psort location CytoplasmicMembrane, score - - - - - - - - - - - - MatE HNDODLHM_01096 1160721.RBI_II00307 3.95e-55 182.0 COG0637@1|root,COG0637@2|Bacteria,1VA5Z@1239|Firmicutes,24JNY@186801|Clostridia,3WI50@541000|Ruminococcaceae 186801|Clostridia S IA, variant 3 - - - - - - - - - - - - HAD_2,Mannitol_dh_C HNDODLHM_01097 511680.BUTYVIB_01582 4.59e-119 372.0 COG4805@1|root,COG4805@2|Bacteria,1TREN@1239|Firmicutes,249U9@186801|Clostridia 186801|Clostridia S protein conserved in bacteria - - - - - - - - - - - - DUF885 HNDODLHM_01098 1123313.ATUT01000016_gene634 1.05e-175 506.0 COG0534@1|root,COG0534@2|Bacteria,1TP5P@1239|Firmicutes 1239|Firmicutes V Psort location CytoplasmicMembrane, score - - - - - - - - - - - - MatE HNDODLHM_01099 999411.HMPREF1092_01597 2.89e-63 215.0 COG5542@1|root,COG5542@2|Bacteria,1V8T0@1239|Firmicutes,24A0C@186801|Clostridia,36VD7@31979|Clostridiaceae 186801|Clostridia S integral membrane protein - - - - - - - - - - - - GT87 HNDODLHM_01100 428125.CLOLEP_00284 6.78e-182 513.0 COG0180@1|root,COG0180@2|Bacteria,1TPY7@1239|Firmicutes,248RC@186801|Clostridia,3WGS4@541000|Ruminococcaceae 186801|Clostridia J Tryptophanyl-tRNA synthetase trpS - 6.1.1.2 ko:K01867 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_1b HNDODLHM_01101 428125.CLOLEP_00283 6.73e-204 576.0 COG1167@1|root,COG1167@2|Bacteria,1TPS5@1239|Firmicutes,248ZB@186801|Clostridia,3WGG5@541000|Ruminococcaceae 186801|Clostridia EK Aminotransferase, class I - - - ko:K05825 ko00300,ko01100,ko01130,ko01210,map00300,map01100,map01130,map01210 - R01939 RC00006 ko00000,ko00001,ko01000 - - - Aminotran_1_2 HNDODLHM_01102 1033737.CAEV01000056_gene3714 4.58e-60 206.0 28IAA@1|root,2Z8CW@2|Bacteria,1TQHP@1239|Firmicutes,248TG@186801|Clostridia,36F51@31979|Clostridiaceae 186801|Clostridia S DHHW protein - - - - - - - - - - - - DHHW HNDODLHM_01103 428125.CLOLEP_01488 3.6e-51 174.0 COG1051@1|root,COG1051@2|Bacteria,1VAMK@1239|Firmicutes,24RHG@186801|Clostridia,3WIE0@541000|Ruminococcaceae 186801|Clostridia F Belongs to the Nudix hydrolase family - - - - - - - - - - - - NUDIX HNDODLHM_01105 428125.CLOLEP_01611 5.61e-103 306.0 COG0566@1|root,COG0566@2|Bacteria,1TP9G@1239|Firmicutes,247SC@186801|Clostridia,3WGPU@541000|Ruminococcaceae 186801|Clostridia J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family yacO - 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind HNDODLHM_01107 1121334.KB911075_gene1783 1.01e-83 254.0 COG0036@1|root,COG0036@2|Bacteria,1TQK8@1239|Firmicutes,248AR@186801|Clostridia,3WISD@541000|Ruminococcaceae 186801|Clostridia G Belongs to the ribulose-phosphate 3-epimerase family rpe - 5.1.3.1 ko:K01783 ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01529 RC00540 ko00000,ko00001,ko00002,ko01000 - - - Ribul_P_3_epim HNDODLHM_01109 1408437.JNJN01000019_gene26 4.17e-110 332.0 COG1086@1|root,COG1086@2|Bacteria,1U3RH@1239|Firmicutes,24K9I@186801|Clostridia 186801|Clostridia GM methyltransferase FkbM family - - - - - - - - - - - - Methyltransf_21 HNDODLHM_01110 428125.CLOLEP_02036 1.69e-149 439.0 COG2607@1|root,COG2607@2|Bacteria,1TQDJ@1239|Firmicutes,2483S@186801|Clostridia,3WH9K@541000|Ruminococcaceae 186801|Clostridia S ATPase (AAA superfamily) - - - ko:K06923 - - - - ko00000 - - - DUF815 HNDODLHM_01111 1345697.M493_16510 2.84e-10 70.5 COG0791@1|root,COG3409@1|root,COG0791@2|Bacteria,COG3409@2|Bacteria,1TT2K@1239|Firmicutes,4ISYS@91061|Bacilli,1WF59@129337|Geobacillus 91061|Bacilli M NlpC/P60 family - - - - - - - - - - - - NLPC_P60,PG_binding_1 HNDODLHM_01112 1105031.HMPREF1141_0377 4.02e-100 301.0 COG0122@1|root,COG0122@2|Bacteria,1TQAF@1239|Firmicutes,2495X@186801|Clostridia,36DTH@31979|Clostridiaceae 186801|Clostridia L 8-oxoguanine DNA glycosylase alkA - 4.2.99.18 ko:K03660 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - HhH-GPD,OGG_N HNDODLHM_01113 428125.CLOLEP_01608 1.35e-75 236.0 28P0Q@1|root,2ZBX8@2|Bacteria,1V22P@1239|Firmicutes,248XV@186801|Clostridia,3WJK7@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_01114 518637.EUBIFOR_00899 9.72e-245 679.0 COG2873@1|root,COG2873@2|Bacteria,1VYCY@1239|Firmicutes,3VPVX@526524|Erysipelotrichia 526524|Erysipelotrichia E Cys/Met metabolism PLP-dependent enzyme - - - - - - - - - - - - Cys_Met_Meta_PP HNDODLHM_01117 665956.HMPREF1032_00166 3.9e-28 102.0 COG1396@1|root,COG1396@2|Bacteria,1UHV9@1239|Firmicutes,25E41@186801|Clostridia,3WRBW@541000|Ruminococcaceae 186801|Clostridia K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_19,HTH_3 HNDODLHM_01118 756499.Desde_0485 9.75e-26 96.7 COG1476@1|root,COG1476@2|Bacteria,1VEIS@1239|Firmicutes,24R6J@186801|Clostridia,265K6@186807|Peptococcaceae 186801|Clostridia K transcriptional regulator - - - - - - - - - - - - HTH_3 HNDODLHM_01120 1120746.CCNL01000017_gene2929 1.76e-82 249.0 COG0452@1|root,COG0452@2|Bacteria,2NRM0@2323|unclassified Bacteria 2|Bacteria H Flavoprotein spoVFB - - ko:K06411 - - - - ko00000 - - - Flavoprotein HNDODLHM_01121 1120746.CCNL01000017_gene2928 4.26e-80 251.0 COG0111@1|root,COG0111@2|Bacteria 2|Bacteria EH 4-phosphoerythronate dehydrogenase activity spoVFA - - ko:K06410 - - - - ko00000 - - - 2-Hacid_dh_C,AdoHcyase_NAD,AlaDh_PNT_C,DpaA_N HNDODLHM_01122 1341157.RF007C_03440 5.98e-107 319.0 COG0583@1|root,COG0583@2|Bacteria,1TSNI@1239|Firmicutes,249QS@186801|Clostridia,3WIYC@541000|Ruminococcaceae 186801|Clostridia K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate HNDODLHM_01123 1392487.JIAD01000001_gene299 3.58e-152 439.0 COG2855@1|root,COG2855@2|Bacteria,1TQYA@1239|Firmicutes,247X6@186801|Clostridia,25V2Q@186806|Eubacteriaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score yeiH - - - - - - - - - - - Cons_hypoth698 HNDODLHM_01124 483218.BACPEC_02714 4.17e-169 474.0 COG1028@1|root,COG1028@2|Bacteria,1TRYD@1239|Firmicutes,248RG@186801|Clostridia,267M6@186813|unclassified Clostridiales 186801|Clostridia IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 HNDODLHM_01128 411474.COPEUT_00066 7.15e-165 461.0 COG0745@1|root,COG0745@2|Bacteria,1UDAQ@1239|Firmicutes,249RQ@186801|Clostridia 186801|Clostridia KT COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain kdpE - - ko:K07667 ko02020,ko02024,map02020,map02024 M00454 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C HNDODLHM_01129 411474.COPEUT_00067 0.0 1238.0 COG0642@1|root,COG2205@2|Bacteria,1TQHB@1239|Firmicutes,247S4@186801|Clostridia 186801|Clostridia T ATPase histidine kinase DNA gyrase B HSP90 domain protein kdpD - 2.7.13.3 ko:K07646 ko02020,map02020 M00454 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF4118,HATPase_c,HisKA,KdpD HNDODLHM_01130 411474.COPEUT_00068 2.44e-44 144.0 2FJ5Y@1|root,34AW2@2|Bacteria,1W1C4@1239|Firmicutes,253GU@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01131 411474.COPEUT_00069 2.68e-142 402.0 COG0569@1|root,COG0569@2|Bacteria,1TQ9H@1239|Firmicutes,249C2@186801|Clostridia 186801|Clostridia P domain protein ktrA - - ko:K03499 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkA_C,TrkA_N HNDODLHM_01132 411474.COPEUT_00070 7.69e-294 805.0 COG0168@1|root,COG0168@2|Bacteria,1TQ4S@1239|Firmicutes,247Q3@186801|Clostridia 186801|Clostridia P Potassium uptake protein - - - ko:K03498 - - - - ko00000,ko02000 2.A.38.1,2.A.38.4 - - TrkH HNDODLHM_01133 1408304.JAHA01000006_gene768 1.9e-96 283.0 COG0406@1|root,COG0406@2|Bacteria,1V25J@1239|Firmicutes,24FZT@186801|Clostridia,4BXR3@830|Butyrivibrio 186801|Clostridia G Phosphoglycerate mutase family - - - - - - - - - - - - His_Phos_1 HNDODLHM_01134 1392493.JIAB01000001_gene1643 3.97e-84 251.0 COG1335@1|root,COG1335@2|Bacteria,1V1CY@1239|Firmicutes,24HQM@186801|Clostridia,27MPZ@186928|unclassified Lachnospiraceae 186801|Clostridia Q Isochorismatase family - - - - - - - - - - - - Isochorismatase HNDODLHM_01136 411483.FAEPRAA2165_00801 1.73e-165 468.0 COG2207@1|root,COG2207@2|Bacteria,1TR2K@1239|Firmicutes,24ABH@186801|Clostridia,3WGYB@541000|Ruminococcaceae 186801|Clostridia K transcriptional regulator AraC family araC_2 - - ko:K02099 - - - - ko00000,ko03000 - - - AraC_binding,HTH_18,HTH_AraC HNDODLHM_01137 411474.COPEUT_01905 1.65e-31 123.0 COG3250@1|root,COG3250@2|Bacteria,1TPDC@1239|Firmicutes,248H7@186801|Clostridia 186801|Clostridia G beta-galactosidase - - 3.2.1.23 ko:K01190 ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100 - R01105,R01678,R03355,R04783,R06114 RC00049,RC00452 ko00000,ko00001,ko01000 - - - Bgal_small_N,DUF4981,Glyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N HNDODLHM_01138 428125.CLOLEP_00436 3.27e-276 762.0 COG5016@1|root,COG5016@2|Bacteria,1VT8P@1239|Firmicutes,247NZ@186801|Clostridia,3WH2N@541000|Ruminococcaceae 186801|Clostridia C Pyruvate carboxylase, C-terminal domain subunit K01960 oadA - 4.1.1.3 ko:K01571 ko00620,ko01100,map00620,map01100 - R00217 RC00040 ko00000,ko00001,ko01000,ko02000 3.B.1.1.1 - - HMGL-like,PYC_OADA HNDODLHM_01139 537013.CLOSTMETH_02658 2.73e-15 73.9 COG4770@1|root,COG4770@2|Bacteria,1VA1E@1239|Firmicutes,24MUJ@186801|Clostridia,3WK2X@541000|Ruminococcaceae 186801|Clostridia I Biotin-requiring enzyme gcdC - - - - - - - - - - - Biotin_lipoyl HNDODLHM_01140 1120746.CCNL01000011_gene1695 4.16e-117 357.0 COG4799@1|root,COG4799@2|Bacteria 2|Bacteria I CoA carboxylase activity mdcD - 2.1.3.10,4.1.1.87 ko:K13932,ko:K13933,ko:K20510,ko:K20511 - - - - ko00000,ko01000,ko02000 3.B.1.1.4 - - Carboxyl_trans,MdcE HNDODLHM_01141 877411.JMMA01000002_gene1249 3.54e-103 306.0 COG1187@1|root,COG1187@2|Bacteria,1TP68@1239|Firmicutes,248UG@186801|Clostridia,3WHAC@541000|Ruminococcaceae 186801|Clostridia J Belongs to the pseudouridine synthase RsuA family rluB - 5.4.99.19,5.4.99.22 ko:K06178,ko:K06183 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 HNDODLHM_01142 428125.CLOLEP_00442 3.53e-100 308.0 COG1686@1|root,COG1686@2|Bacteria,1TQ8M@1239|Firmicutes,2480S@186801|Clostridia,3WGET@541000|Ruminococcaceae 186801|Clostridia M Belongs to the peptidase S11 family - - 3.4.16.4 ko:K01286,ko:K07258 ko00550,ko01100,map00550,map01100 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - PBP5_C,Peptidase_S11 HNDODLHM_01143 428125.CLOLEP_00443 6.11e-47 156.0 COG3874@1|root,COG3874@2|Bacteria,1V6H7@1239|Firmicutes,24JJ5@186801|Clostridia,3WJU2@541000|Ruminococcaceae 186801|Clostridia S Sporulation protein YtfJ ytfJ - - - - - - - - - - - Spore_YtfJ HNDODLHM_01144 428125.CLOLEP_00444 3.75e-25 104.0 2EMWG@1|root,33FIR@2|Bacteria,1VN82@1239|Firmicutes,24UV8@186801|Clostridia,3WR68@541000|Ruminococcaceae 186801|Clostridia S Protein of unknown function (DUF2953) - - - - - - - - - - - - DUF2953 HNDODLHM_01145 1120746.CCNL01000011_gene1689 3.11e-69 216.0 COG1386@1|root,COG1386@2|Bacteria,2NPPM@2323|unclassified Bacteria 2|Bacteria D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves scpB GO:0003674,GO:0005488,GO:0005515,GO:0042802 - ko:K06024 - - - - ko00000,ko03036 - - - SMC_ScpB HNDODLHM_01146 428125.CLOLEP_00446 1.97e-85 261.0 COG1354@1|root,COG1354@2|Bacteria,1TRW3@1239|Firmicutes,249VW@186801|Clostridia,3WJ4D@541000|Ruminococcaceae 186801|Clostridia D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves scpA - - ko:K05896 - - - - ko00000,ko03036 - - - SMC_ScpA HNDODLHM_01147 428125.CLOLEP_00447 6.59e-75 233.0 COG1994@1|root,COG1994@2|Bacteria,1V6D4@1239|Firmicutes,24K0D@186801|Clostridia,3WJN0@541000|Ruminococcaceae 186801|Clostridia S peptidase M50 - - - - - - - - - - - - Peptidase_M50 HNDODLHM_01148 428125.CLOLEP_00448 3.37e-34 117.0 COG0227@1|root,COG0227@2|Bacteria,1VEI2@1239|Firmicutes,24QNA@186801|Clostridia,3WKM9@541000|Ruminococcaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bL28 family rpmB - - ko:K02902 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L28 HNDODLHM_01152 411483.FAEPRAA2165_02226 2.91e-53 182.0 COG1055@1|root,COG1055@2|Bacteria,1TQCH@1239|Firmicutes,25CD7@186801|Clostridia,3WGPH@541000|Ruminococcaceae 186801|Clostridia P Citrate transporter - - - - - - - - - - - - CitMHS HNDODLHM_01153 411471.SUBVAR_07165 4.94e-212 593.0 COG0582@1|root,COG0582@2|Bacteria,1TTJI@1239|Firmicutes,247V6@186801|Clostridia,3WHRW@541000|Ruminococcaceae 186801|Clostridia L Belongs to the 'phage' integrase family - - - - - - - - - - - - Phage_int_SAM_3,Phage_int_SAM_5,Phage_integrase HNDODLHM_01155 1392491.JIAE01000001_gene152 9.25e-70 213.0 2DMEA@1|root,32QX5@2|Bacteria,1VACU@1239|Firmicutes,24MWK@186801|Clostridia,3WMU2@541000|Ruminococcaceae 186801|Clostridia S Protein of unknown function (DUF2442) - - - - - - - - - - - - DUF2442 HNDODLHM_01156 596324.TREVI0001_0089 2.69e-43 142.0 2E3EN@1|root,32YDN@2|Bacteria,2J9DK@203691|Spirochaetes 203691|Spirochaetes S Domain of unknown function (DUF4160) - - - - - - - - - - - - DUF4160 HNDODLHM_01157 1195236.CTER_1507 1.09e-182 529.0 COG3344@1|root,COG3344@2|Bacteria,1V0M0@1239|Firmicutes,24DGA@186801|Clostridia 186801|Clostridia L Reverse transcriptase (RNA-dependent DNA polymerase) - - - - - - - - - - - - RVT_1 HNDODLHM_01158 657322.FPR_05710 7.96e-220 610.0 COG1277@1|root,COG1277@2|Bacteria,1V281@1239|Firmicutes,24G9D@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_01159 411467.BACCAP_02846 2.59e-198 551.0 COG1131@1|root,COG1131@2|Bacteria,1TRJH@1239|Firmicutes,247XQ@186801|Clostridia,26A14@186813|unclassified Clostridiales 186801|Clostridia V ATPases associated with a variety of cellular activities - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_01160 657322.FPR_05730 3.7e-226 629.0 COG0642@1|root,COG3850@1|root,COG2205@2|Bacteria,COG3850@2|Bacteria,1TRZX@1239|Firmicutes,249AI@186801|Clostridia,3WIVN@541000|Ruminococcaceae 186801|Clostridia T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - - - - - - - - - - HAMP,HATPase_c,HisKA HNDODLHM_01161 657322.FPR_05740 1.02e-155 437.0 COG0745@1|root,COG0745@2|Bacteria,1TQ0D@1239|Firmicutes,248WX@186801|Clostridia,3WIJ0@541000|Ruminococcaceae 186801|Clostridia KT Transcriptional regulatory protein, C terminal - - - ko:K20488 ko02020,ko02024,map02020,map02024 M00816 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C HNDODLHM_01162 411483.FAEPRAA2165_02038 5.19e-31 109.0 COG2909@1|root,COG2909@2|Bacteria,1VGAF@1239|Firmicutes,24SMP@186801|Clostridia,3WK3Y@541000|Ruminococcaceae 186801|Clostridia K trisaccharide binding - - - - - - - - - - - - HTH_17 HNDODLHM_01163 1235802.C823_03065 3.37e-79 235.0 COG1476@1|root,COG1476@2|Bacteria,1V2E7@1239|Firmicutes,24GRE@186801|Clostridia,25XE9@186806|Eubacteriaceae 186801|Clostridia K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_19 HNDODLHM_01164 428125.CLOLEP_03751 8.53e-34 117.0 COG0236@1|root,COG0236@2|Bacteria,1VEE3@1239|Firmicutes,24QME@186801|Clostridia,3WKU1@541000|Ruminococcaceae 186801|Clostridia IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis acpP - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding HNDODLHM_01165 428125.CLOLEP_03755 4.1e-262 728.0 COG0441@1|root,COG0441@2|Bacteria,1UHT4@1239|Firmicutes,25E98@186801|Clostridia,3WHAG@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) proS - 6.1.1.15 ko:K01881 ko00970,map00970 M00359,M00360 R03661 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,ProRS-C_1,tRNA-synt_2b HNDODLHM_01166 1195236.CTER_0859 9.64e-08 53.9 COG5340@1|root,COG5340@2|Bacteria,1U3YI@1239|Firmicutes,24BQS@186801|Clostridia,3WQAF@541000|Ruminococcaceae 186801|Clostridia K Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_01167 428125.CLOLEP_02491 2.49e-159 453.0 COG1897@1|root,COG1897@2|Bacteria,1TQVR@1239|Firmicutes,247NP@186801|Clostridia,3WGY0@541000|Ruminococcaceae 186801|Clostridia E Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine metAA - 2.3.1.46 ko:K00651 ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230 M00017 R01777 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS11970 AA_kinase,HTS HNDODLHM_01168 428125.CLOLEP_01053 1.17e-118 347.0 COG0263@1|root,COG0263@2|Bacteria,1TPG6@1239|Firmicutes,2486P@186801|Clostridia,3WGZ7@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate proB - 2.7.2.11 ko:K00931 ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230 M00015 R00239 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,PUA HNDODLHM_01169 428125.CLOLEP_01052 3.74e-202 570.0 COG0014@1|root,COG0014@2|Bacteria,1TQ9V@1239|Firmicutes,248NX@186801|Clostridia,3WH60@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate proA - 1.2.1.41 ko:K00147 ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230 M00015 R03313 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Aldedh HNDODLHM_01171 428125.CLOLEP_01049 3.38e-12 66.6 2EH2J@1|root,33AUH@2|Bacteria,1VP6D@1239|Firmicutes,24QT3@186801|Clostridia,3WM9M@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01173 1321778.HMPREF1982_01251 1e-36 130.0 COG0622@1|root,COG0622@2|Bacteria,1VA0U@1239|Firmicutes,24MMK@186801|Clostridia,269B8@186813|unclassified Clostridiales 186801|Clostridia S Calcineurin-like phosphoesterase superfamily domain yfcE1 - - ko:K07095 - - - - ko00000 - - - Metallophos_2 HNDODLHM_01174 1293054.HSACCH_01742 3e-17 88.2 COG2812@1|root,COG2812@2|Bacteria,1VCQC@1239|Firmicutes,248U4@186801|Clostridia,3WAJV@53433|Halanaerobiales 186801|Clostridia L TIGRFAM DNA polymerase III, delta holB - 2.7.7.7 ko:K02341 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNApol3-delta_C HNDODLHM_01175 428125.CLOLEP_03761 2.8e-148 424.0 COG1774@1|root,COG1774@2|Bacteria,1TP1V@1239|Firmicutes,247Q6@186801|Clostridia,3WHA4@541000|Ruminococcaceae 186801|Clostridia S PSP1 C-terminal domain protein yaaT - - - - - - - - - - - PSP1 HNDODLHM_01176 645991.Sgly_0634 5.05e-11 58.5 COG4231@1|root,COG4231@2|Bacteria,1UIUE@1239|Firmicutes,25ES8@186801|Clostridia,267EQ@186807|Peptococcaceae 186801|Clostridia C 4Fe-4S binding domain - - - - - - - - - - - - Fer4 HNDODLHM_01177 1121334.KB911067_gene394 2.76e-80 248.0 COG4123@1|root,COG4123@2|Bacteria,1TQ25@1239|Firmicutes,249UH@186801|Clostridia,3WH2K@541000|Ruminococcaceae 186801|Clostridia S Methyltransferase small domain yfiC - 2.1.1.223 ko:K15460 - - - - ko00000,ko01000,ko03016 - - - MTS,Methyltransf_31 HNDODLHM_01178 1120746.CCNL01000017_gene3223 7.84e-130 376.0 COG0313@1|root,COG0313@2|Bacteria,2NP98@2323|unclassified Bacteria 2|Bacteria H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase HNDODLHM_01179 1120746.CCNL01000014_gene2038 2.12e-135 402.0 COG0285@1|root,COG0285@2|Bacteria,2NP60@2323|unclassified Bacteria 2|Bacteria H Belongs to the folylpolyglutamate synthase family folC - 6.3.2.12,6.3.2.17 ko:K11754 ko00790,ko01100,map00790,map01100 M00126,M00841 R00942,R02237,R04241 RC00064,RC00090,RC00162 ko00000,ko00001,ko00002,ko01000 - - - Mur_ligase_C,Mur_ligase_M HNDODLHM_01180 537013.CLOSTMETH_03322 8.03e-27 102.0 COG1366@1|root,COG1366@2|Bacteria,1VENG@1239|Firmicutes,24R0X@186801|Clostridia,3WKRQ@541000|Ruminococcaceae 186801|Clostridia T Belongs to the anti-sigma-factor antagonist family spoIIAA - - ko:K06378 - - - - ko00000 - - - STAS HNDODLHM_01181 1341157.RF007C_08270 3.06e-57 182.0 COG2172@1|root,COG2172@2|Bacteria,1V6V2@1239|Firmicutes,24JPT@186801|Clostridia,3WJC6@541000|Ruminococcaceae 186801|Clostridia T Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti-anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition spoIIAB - 2.7.11.1 ko:K06379 - - - - ko00000,ko01000 - - - HATPase_c_2 HNDODLHM_01182 1410617.JHXH01000005_gene1104 1.69e-72 226.0 COG1191@1|root,COG1191@2|Bacteria,1V296@1239|Firmicutes,24GTU@186801|Clostridia,3WGPV@541000|Ruminococcaceae 186801|Clostridia K Belongs to the sigma-70 factor family sigF - - ko:K03091 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r3,Sigma70_r4 HNDODLHM_01183 1321814.HMPREF9089_00413 7.59e-52 170.0 COG0703@1|root,COG0703@2|Bacteria,1V3W6@1239|Firmicutes,24HKA@186801|Clostridia,25WG3@186806|Eubacteriaceae 186801|Clostridia F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK - 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - SKI HNDODLHM_01184 1031288.AXAA01000002_gene1423 8.59e-128 390.0 COG0469@1|root,COG0469@2|Bacteria,1TPGG@1239|Firmicutes,2489V@186801|Clostridia,36DIR@31979|Clostridiaceae 186801|Clostridia G Belongs to the pyruvate kinase family pyk - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PEP-utilizers,PK,PK_C HNDODLHM_01185 658086.HMPREF0994_01376 2.58e-33 143.0 COG1705@1|root,COG1705@2|Bacteria,1UMKN@1239|Firmicutes,25GKA@186801|Clostridia,27IXC@186928|unclassified Lachnospiraceae 186801|Clostridia NU CotH kinase protein - - - - - - - - - - - - CotH HNDODLHM_01186 1160721.RBI_I01767 4.65e-38 127.0 2E7X8@1|root,332BT@2|Bacteria,1VG5Y@1239|Firmicutes,24RJD@186801|Clostridia,3WKNY@541000|Ruminococcaceae 186801|Clostridia S Ferredoxin thioredoxin reductase catalytic beta chain - - - - - - - - - - - - FeThRed_B HNDODLHM_01187 140626.JHWB01000013_gene713 4.02e-42 140.0 COG3118@1|root,COG3118@2|Bacteria,1VA3Y@1239|Firmicutes,24MM5@186801|Clostridia 186801|Clostridia O Belongs to the thioredoxin family - - - - - - - - - - - - Thioredoxin HNDODLHM_01188 1160721.RBI_II00396 1.18e-17 82.0 2EQ5U@1|root,33HS4@2|Bacteria,1V3H5@1239|Firmicutes,24VF0@186801|Clostridia,3WKPZ@541000|Ruminococcaceae 186801|Clostridia S Terminase small subunit - - - - - - - - - - - - Terminase_2 HNDODLHM_01189 1105031.HMPREF1141_0088 1.87e-202 572.0 COG1783@1|root,COG1783@2|Bacteria,1TT2C@1239|Firmicutes,24A7T@186801|Clostridia,36DG1@31979|Clostridiaceae 186801|Clostridia S phage terminase, large subunit, PBSX family - - - - - - - - - - - - Terminase_6,Terminase_6C HNDODLHM_01190 428125.CLOLEP_03661 3.45e-114 345.0 28KHP@1|root,2ZA34@2|Bacteria,1TQEJ@1239|Firmicutes,249F6@186801|Clostridia,3WGJX@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - Phage_portal HNDODLHM_01191 428125.CLOLEP_03662 6.29e-82 258.0 28MWX@1|root,2ZB45@2|Bacteria,1UZ34@1239|Firmicutes,24EV8@186801|Clostridia,3WIEZ@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_01193 1121334.KB911067_gene269 9.07e-152 436.0 28IS3@1|root,2Z8R9@2|Bacteria,1TSHH@1239|Firmicutes,24CQ6@186801|Clostridia,3WHGD@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - Phage_capsid HNDODLHM_01203 428125.CLOLEP_03675 7.09e-68 224.0 COG3299@1|root,COG3299@2|Bacteria,1UYY1@1239|Firmicutes,24FCN@186801|Clostridia,3WJSZ@541000|Ruminococcaceae 186801|Clostridia S Baseplate J-like protein - - - - - - - - - - - - Baseplate_J HNDODLHM_01205 1235798.C817_05113 5.91e-70 218.0 COG1309@1|root,COG1309@2|Bacteria,1V2BY@1239|Firmicutes,24PUI@186801|Clostridia 186801|Clostridia K WHG domain - - - - - - - - - - - - WHG HNDODLHM_01206 1235792.C808_05194 2.19e-114 333.0 COG1136@1|root,COG1136@2|Bacteria,1TQC9@1239|Firmicutes,248Z6@186801|Clostridia,27IBR@186928|unclassified Lachnospiraceae 186801|Clostridia V ABC transporter - - - - - - - - - - - - ABC_tran HNDODLHM_01207 1235792.C808_05193 5.03e-115 347.0 28K0P@1|root,2Z9QJ@2|Bacteria,1TSN2@1239|Firmicutes,24YHY@186801|Clostridia,27RCG@186928|unclassified Lachnospiraceae 186801|Clostridia P FtsX-like permease family - - - - - - - - - - - - FtsX HNDODLHM_01208 457412.RSAG_00291 0.0 1189.0 COG1961@1|root,COG1961@2|Bacteria,1TPBH@1239|Firmicutes,248J7@186801|Clostridia,3WG7M@541000|Ruminococcaceae 186801|Clostridia L Resolvase, N-terminal domain protein - - - - - - - - - - - - Recombinase,Resolvase HNDODLHM_01210 457412.RSAG_00293 9.96e-82 242.0 COG2337@1|root,COG2337@2|Bacteria,1V3VN@1239|Firmicutes,24IES@186801|Clostridia,3WP5F@541000|Ruminococcaceae 186801|Clostridia L Toxic component of a toxin-antitoxin (TA) module - - - ko:K07171 - - - - ko00000,ko01000,ko02048 - - - PemK_toxin HNDODLHM_01211 1160721.RBI_I01310 5.01e-91 267.0 COG1595@1|root,COG1595@2|Bacteria,1V53N@1239|Firmicutes,24INY@186801|Clostridia,3WSF1@541000|Ruminococcaceae 186801|Clostridia K Putative ATPase subunit of terminase (gpP-like) - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r4_2 HNDODLHM_01212 1160721.RBI_I01308 6.17e-201 556.0 COG1408@1|root,COG1408@2|Bacteria,1UU17@1239|Firmicutes,248PS@186801|Clostridia,3WJ5P@541000|Ruminococcaceae 186801|Clostridia S Calcineurin-like phosphoesterase superfamily domain - - - ko:K07098 - - - - ko00000 - - - DUF1294,Metallophos HNDODLHM_01213 457412.RSAG_04734 0.0 1500.0 COG0577@1|root,COG0577@2|Bacteria,1TRAS@1239|Firmicutes,248SQ@186801|Clostridia,3WI3D@541000|Ruminococcaceae 186801|Clostridia V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD HNDODLHM_01214 411463.EUBVEN_01214 6.72e-94 277.0 COG4475@1|root,COG4475@2|Bacteria,1V3H0@1239|Firmicutes,24HEU@186801|Clostridia,25WKB@186806|Eubacteriaceae 186801|Clostridia S Protein of unknown function (DUF436) - - - - - - - - - - - - DUF436 HNDODLHM_01215 552396.HMPREF0863_00660 1.74e-282 813.0 COG1215@1|root,COG1887@1|root,COG1215@2|Bacteria,COG1887@2|Bacteria,1UYH3@1239|Firmicutes 1239|Firmicutes M COG0463 Glycosyltransferases involved in cell wall biogenesis - - - - - - - - - - - - Glycos_transf_2,Glyphos_transf HNDODLHM_01216 1392493.JIAB01000001_gene1584 1.91e-60 206.0 COG3274@1|root,COG3274@2|Bacteria,1V9EN@1239|Firmicutes,25CM5@186801|Clostridia,27U5U@186928|unclassified Lachnospiraceae 186801|Clostridia S Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 HNDODLHM_01217 1341157.RF007C_12595 2.41e-46 157.0 COG0454@1|root,COG0456@2|Bacteria,1VEW7@1239|Firmicutes,24RBJ@186801|Clostridia,3WJBB@541000|Ruminococcaceae 186801|Clostridia K Acetyltransferase (GNAT) domain nnrE - - - - - - - - - - - Acetyltransf_1,Acetyltransf_7,YjeF_N HNDODLHM_01218 537007.BLAHAN_07107 5.51e-111 341.0 COG0534@1|root,COG0534@2|Bacteria,1TNZN@1239|Firmicutes,247YX@186801|Clostridia,3XZQ9@572511|Blautia 186801|Clostridia V Psort location CytoplasmicMembrane, score 9.99 - - - - - - - - - - - - MatE HNDODLHM_01219 1120746.CCNL01000017_gene3138 3.01e-74 254.0 COG0265@1|root,COG0265@2|Bacteria,2NNVS@2323|unclassified Bacteria 2|Bacteria O smart pdz dhr glgf htrA - 3.4.21.107 ko:K04771,ko:K08372 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ_2,Trypsin_2 HNDODLHM_01220 702459.BBPR_1112 2.81e-89 273.0 COG2865@1|root,COG2865@2|Bacteria,2IF0U@201174|Actinobacteria,4D0I9@85004|Bifidobacteriales 201174|Actinobacteria - - - - - - - - - - - - - - - HNDODLHM_01221 428125.CLOLEP_02468 2.15e-203 576.0 COG3581@1|root,COG3581@2|Bacteria,1TRVV@1239|Firmicutes,24947@186801|Clostridia,3WH15@541000|Ruminococcaceae 186801|Clostridia I Psort location Cytoplasmic, score - - - - - - - - - - - - HGD-D HNDODLHM_01222 428125.CLOLEP_02467 0.0 1381.0 COG1924@1|root,COG3580@1|root,COG1924@2|Bacteria,COG3580@2|Bacteria,1TPU5@1239|Firmicutes,2481F@186801|Clostridia,3WGW6@541000|Ruminococcaceae 186801|Clostridia I CoA-substrate-specific enzyme activase hgdC2 - - - - - - - - - - - BcrAD_BadFG,DUF2229,HGD-D HNDODLHM_01224 410358.Mlab_0596 1.87e-16 82.8 arCOG07861@1|root,arCOG07861@2157|Archaea 2157|Archaea S CpXC protein - - - - - - - - - - - - CpXC HNDODLHM_01225 428125.CLOLEP_01479 1.82e-202 565.0 2C4R5@1|root,2Z7JK@2|Bacteria,1TQIE@1239|Firmicutes,24879@186801|Clostridia,3WGV8@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - GGGtGRT HNDODLHM_01226 428125.CLOLEP_01481 1.22e-150 425.0 COG0822@1|root,COG0822@2|Bacteria,1TQEQ@1239|Firmicutes,248ID@186801|Clostridia,3WGYK@541000|Ruminococcaceae 186801|Clostridia C Psort location Cytoplasmic, score - - - - - - - - - - - - NifU_N HNDODLHM_01227 1408324.JNJK01000043_gene842 3.77e-34 117.0 COG1476@1|root,COG1476@2|Bacteria,1VERT@1239|Firmicutes,24QJJ@186801|Clostridia,27PMY@186928|unclassified Lachnospiraceae 186801|Clostridia K Helix-turn-helix domain - - - ko:K07729 - - - - ko00000,ko03000 - - - HTH_3 HNDODLHM_01229 1507.HMPREF0262_00298 1.39e-26 98.6 2BRIM@1|root,32KHM@2|Bacteria,1US5F@1239|Firmicutes,24S12@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01231 428125.CLOLEP_01746 1.5e-62 198.0 COG0779@1|root,COG0779@2|Bacteria,1V6KT@1239|Firmicutes,24N1G@186801|Clostridia,3WJSY@541000|Ruminococcaceae 186801|Clostridia S Required for maturation of 30S ribosomal subunits rimP - - ko:K09748 - - - - ko00000,ko03009 - - - DUF150,DUF150_C HNDODLHM_01232 428125.CLOLEP_01747 4.82e-154 445.0 COG0195@1|root,COG0195@2|Bacteria,1TPB3@1239|Firmicutes,247W8@186801|Clostridia,3WG8A@541000|Ruminococcaceae 186801|Clostridia K Participates in both transcription termination and antitermination nusA - - ko:K02600 - - - - ko00000,ko03009,ko03021 - - - KH_5,NusA_N,S1 HNDODLHM_01233 1105031.HMPREF1141_1870 1.57e-38 131.0 COG2740@1|root,COG2740@2|Bacteria,1VEJS@1239|Firmicutes,24QSJ@186801|Clostridia,36KH1@31979|Clostridiaceae 186801|Clostridia K Nucleic-acid-binding protein implicated in transcription termination ylxR - - ko:K07742 - - - - ko00000 - - - DUF448 HNDODLHM_01234 428125.CLOLEP_01749 7.21e-17 77.0 COG1358@1|root,COG1358@2|Bacteria 2|Bacteria J ncRNA processing ylxRQ - - ko:K07590,ko:K07742 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - DUF448,Ribosomal_L7Ae HNDODLHM_01235 428125.CLOLEP_01750 0.0 1013.0 COG0532@1|root,COG0532@2|Bacteria,1TPAI@1239|Firmicutes,248SJ@186801|Clostridia,3WHTD@541000|Ruminococcaceae 186801|Clostridia J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex infB - - ko:K02519 - - - - ko00000,ko03012,ko03029 - - - GTP_EFTU,IF-2,IF2_N HNDODLHM_01236 428125.CLOLEP_01751 8.87e-54 171.0 COG0858@1|root,COG0858@2|Bacteria,1VA0P@1239|Firmicutes,24MPB@186801|Clostridia,3WJYA@541000|Ruminococcaceae 186801|Clostridia J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA rbfA - - ko:K02834 - - - - ko00000,ko03009 - - - RBFA HNDODLHM_01237 428125.CLOLEP_01752 6.57e-98 298.0 COG0618@1|root,COG0618@2|Bacteria,1TPXX@1239|Firmicutes,248R3@186801|Clostridia,3WGKS@541000|Ruminococcaceae 186801|Clostridia S domain protein nrnA - 3.1.13.3,3.1.3.7 ko:K06881 ko00920,ko01100,ko01120,map00920,map01100,map01120 - R00188,R00508 RC00078 ko00000,ko00001,ko01000,ko03400 - - - DHH,DHHA1 HNDODLHM_01238 1120746.CCNL01000017_gene3269 5.95e-103 310.0 COG0130@1|root,COG0130@2|Bacteria,2NP9J@2323|unclassified Bacteria 2|Bacteria J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs truB GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 ko:K03177,ko:K03483 - - - - ko00000,ko01000,ko03000,ko03016 - - iSB619.SA_RS06305 TruB-C_2,TruB_C_2,TruB_N HNDODLHM_01239 1410633.JHWR01000009_gene1908 5.42e-112 327.0 COG1136@1|root,COG1136@2|Bacteria,1TP6H@1239|Firmicutes,247JJ@186801|Clostridia,27J1B@186928|unclassified Lachnospiraceae 186801|Clostridia V ATPases associated with a variety of cellular activities - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_01240 1410633.JHWR01000009_gene1907 1.83e-110 367.0 COG0577@1|root,COG0577@2|Bacteria,1TRAS@1239|Firmicutes,248SQ@186801|Clostridia,27K7N@186928|unclassified Lachnospiraceae 186801|Clostridia V FtsX-like permease family - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD HNDODLHM_01241 1304880.JAGB01000001_gene800 3.18e-75 233.0 COG0745@1|root,COG0745@2|Bacteria,1TT12@1239|Firmicutes,24AB1@186801|Clostridia 186801|Clostridia T response regulator receiver - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_01242 1410633.JHWR01000009_gene1905 6.95e-76 249.0 COG0642@1|root,COG2205@2|Bacteria,1TT7F@1239|Firmicutes,247UJ@186801|Clostridia,27J5S@186928|unclassified Lachnospiraceae 186801|Clostridia T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA HNDODLHM_01243 1216932.CM240_0790 4.43e-178 574.0 COG0366@1|root,COG1501@1|root,COG0366@2|Bacteria,COG1501@2|Bacteria,1TP9E@1239|Firmicutes,248DX@186801|Clostridia,36DSD@31979|Clostridiaceae 186801|Clostridia G Alpha-amylase domain - - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase,CBM26 HNDODLHM_01244 641112.ACOK01000055_gene3805 8.37e-43 153.0 COG1434@1|root,COG1434@2|Bacteria,1VA42@1239|Firmicutes,24HKK@186801|Clostridia,3WIGF@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF218 HNDODLHM_01245 1121115.AXVN01000104_gene843 4.24e-240 675.0 COG0437@1|root,COG4624@1|root,COG0437@2|Bacteria,COG4624@2|Bacteria,1TQIR@1239|Firmicutes,248BS@186801|Clostridia,3XYSR@572511|Blautia 186801|Clostridia C Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - Fe_hyd_lg_C,Fer4,Fer4_6 HNDODLHM_01247 428125.CLOLEP_02725 3.81e-130 375.0 COG0825@1|root,COG0825@2|Bacteria,1UHNS@1239|Firmicutes,25E47@186801|Clostridia,3WSKG@541000|Ruminococcaceae 186801|Clostridia I Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA accA - 2.1.3.15,6.4.1.2 ko:K01962 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - ACCA HNDODLHM_01248 428125.CLOLEP_02724 1.72e-125 368.0 COG0777@1|root,COG0777@2|Bacteria,1TP4U@1239|Firmicutes,248QK@186801|Clostridia,3WGZ8@541000|Ruminococcaceae 186801|Clostridia I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA accD - 2.1.3.15,6.4.1.2 ko:K01963 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans HNDODLHM_01249 1120746.CCNL01000006_gene337 6.41e-220 618.0 COG0439@1|root,COG0439@2|Bacteria,2NNWM@2323|unclassified Bacteria 2|Bacteria I acetyl-CoA carboxylase, biotin carboxylase accC GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 ko:K01961 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04385 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - iSF_1195.SF3294 Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 HNDODLHM_01250 428125.CLOLEP_02721 2.66e-62 194.0 COG0764@1|root,COG0764@2|Bacteria,1V6EX@1239|Firmicutes,24JAW@186801|Clostridia 186801|Clostridia I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs fabZ - 4.2.1.59 ko:K02372 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121 RC00831,RC01095 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FabA HNDODLHM_01251 1297581.H919_00735 3.4e-31 117.0 COG0511@1|root,COG0511@2|Bacteria,1VAB7@1239|Firmicutes,4HKCS@91061|Bacilli,21VPM@150247|Anoxybacillus 91061|Bacilli I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA accB - - ko:K02160 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742 RC00040,RC00367 ko00000,ko00001,ko00002 - - - Biotin_lipoyl HNDODLHM_01252 1120746.CCNL01000006_gene340 2.2e-187 533.0 COG0304@1|root,COG0304@2|Bacteria,2NNSX@2323|unclassified Bacteria 2|Bacteria I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP fabF - 2.3.1.179,2.3.1.41 ko:K00647,ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt HNDODLHM_01253 428125.CLOLEP_02718 4.59e-113 331.0 COG1028@1|root,COG1028@2|Bacteria,1TP76@1239|Firmicutes,247PV@186801|Clostridia,3WGIW@541000|Ruminococcaceae 186801|Clostridia IQ reductase fabG - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 HNDODLHM_01254 428125.CLOLEP_02717 6.2e-126 368.0 COG0331@1|root,COG0331@2|Bacteria,1TPB7@1239|Firmicutes,247UF@186801|Clostridia,3WGWD@541000|Ruminococcaceae 186801|Clostridia I malonyl CoA-acyl carrier protein transacylase fabD - 2.3.1.39 ko:K00645 ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212 M00082 R01626,R11671 RC00004,RC00039,RC02727 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyl_transf_1 HNDODLHM_01255 1120746.CCNL01000006_gene344 1.59e-142 411.0 COG2070@1|root,COG2070@2|Bacteria,2NPGR@2323|unclassified Bacteria 2|Bacteria S Nitronate monooxygenase fabK - 1.3.1.9 ko:K02371 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00083 R04429,R04724,R04955,R04958,R04961,R04966,R04969,R07765 RC00052,RC00076 ko00000,ko00001,ko00002,ko01000,ko01004 - - iHN637.CLJU_RS20775 NMO HNDODLHM_01257 1105031.HMPREF1141_1042 2.82e-190 570.0 COG0744@1|root,COG0744@2|Bacteria,1TPM5@1239|Firmicutes,248A4@186801|Clostridia,36E3C@31979|Clostridiaceae 186801|Clostridia M penicillin-binding protein 1A mrcB - 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly,Transpeptidase HNDODLHM_01258 428125.CLOLEP_02733 7.81e-182 519.0 COG0460@1|root,COG0460@2|Bacteria,1TQ2H@1239|Firmicutes,248MU@186801|Clostridia,3WGG4@541000|Ruminococcaceae 186801|Clostridia E homoserine dehydrogenase hom - 1.1.1.3 ko:K00003 ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00017,M00018 R01773,R01775 RC00087 ko00000,ko00001,ko00002,ko01000 - - - Homoserine_dh,NAD_binding_3 HNDODLHM_01259 428125.CLOLEP_02735 3.84e-222 620.0 COG0527@1|root,COG0527@2|Bacteria,1TPQJ@1239|Firmicutes,24811@186801|Clostridia,3WHC9@541000|Ruminococcaceae 186801|Clostridia E Belongs to the aspartokinase family lysC - 2.7.2.4 ko:K00928 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R00480 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,ACT,ACT_7 HNDODLHM_01260 428125.CLOLEP_01954 7.41e-89 283.0 COG0845@1|root,COG0845@2|Bacteria,1VE61@1239|Firmicutes,24P4D@186801|Clostridia,3WRFY@541000|Ruminococcaceae 186801|Clostridia M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - - HNDODLHM_01261 428125.CLOLEP_01955 4.81e-92 278.0 COG0325@1|root,COG0325@2|Bacteria,1TRDN@1239|Firmicutes,248R6@186801|Clostridia,3WGKD@541000|Ruminococcaceae 186801|Clostridia S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis ylmE - - ko:K06997 - - - - ko00000 - - - Ala_racemase_N HNDODLHM_01262 1105031.HMPREF1141_2200 6.71e-62 194.0 COG1799@1|root,COG1799@2|Bacteria,1VER3@1239|Firmicutes,24I9Y@186801|Clostridia,36I3V@31979|Clostridiaceae 186801|Clostridia D Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA sepF - - ko:K09772 - - - - ko00000,ko03036 - - - SepF HNDODLHM_01263 1105031.HMPREF1141_2201 7.52e-62 201.0 COG2302@1|root,COG2302@2|Bacteria,1U5V2@1239|Firmicutes,24GDV@186801|Clostridia,36IWC@31979|Clostridiaceae 186801|Clostridia S S4 domain protein - - - - - - - - - - - - S4 HNDODLHM_01264 411471.SUBVAR_05058 3.32e-21 97.1 COG3599@1|root,COG3599@2|Bacteria,1VGCY@1239|Firmicutes,24TVY@186801|Clostridia,3WM0J@541000|Ruminococcaceae 186801|Clostridia D DivIVA domain protein - - - ko:K04074 - - - - ko00000,ko03036 - - - DivIVA HNDODLHM_01265 428125.CLOLEP_01959 0.0 1392.0 COG0060@1|root,COG0060@2|Bacteria,1TPS7@1239|Firmicutes,247XX@186801|Clostridia,3WG9B@541000|Ruminococcaceae 186801|Clostridia J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS HNDODLHM_01266 428125.CLOLEP_01960 4.52e-55 177.0 COG0597@1|root,COG0597@2|Bacteria,1VA9R@1239|Firmicutes,24QPP@186801|Clostridia,3WKYD@541000|Ruminococcaceae 186801|Clostridia MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins lspA - 3.4.23.36 ko:K03101 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_A8 HNDODLHM_01267 1120746.CCNL01000011_gene1853 8.68e-140 404.0 COG0564@1|root,COG0564@2|Bacteria,2NNY5@2323|unclassified Bacteria 2|Bacteria J Responsible for synthesis of pseudouridine from uracil rluD GO:0000027,GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 ko:K06180 - - - - ko00000,ko01000,ko03009 - - iE2348C_1286.E2348C_2868,iECED1_1282.ECED1_3035,iECSF_1327.ECSF_2432 PseudoU_synth_2,S4 HNDODLHM_01268 428125.CLOLEP_02366 4.03e-59 184.0 COG0335@1|root,COG0335@2|Bacteria,1V6FT@1239|Firmicutes,24J83@186801|Clostridia,3WJ8U@541000|Ruminococcaceae 186801|Clostridia J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site rplS - - ko:K02884 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L19 HNDODLHM_01269 428125.CLOLEP_02367 1.25e-57 187.0 COG0681@1|root,COG0681@2|Bacteria,1V6R3@1239|Firmicutes,25CN6@186801|Clostridia,3WKCK@541000|Ruminococcaceae 186801|Clostridia U Belongs to the peptidase S26 family lepB - 3.4.21.89 ko:K03100 ko02024,ko03060,map02024,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S24,Peptidase_S26 HNDODLHM_01270 1120746.CCNL01000007_gene454 8.03e-127 367.0 COG1192@1|root,COG1192@2|Bacteria,2NP2C@2323|unclassified Bacteria 2|Bacteria D Cobyrinic acid ac-diamide synthase soj GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 HNDODLHM_01271 428125.CLOLEP_01278 2.57e-107 320.0 COG1475@1|root,COG1475@2|Bacteria,1TQ2B@1239|Firmicutes,249VV@186801|Clostridia,3WHV1@541000|Ruminococcaceae 186801|Clostridia K Belongs to the ParB family spo0J - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc HNDODLHM_01272 483218.BACPEC_02253 8.01e-266 733.0 COG0172@1|root,COG0172@2|Bacteria,1TP4W@1239|Firmicutes,2485M@186801|Clostridia,268DQ@186813|unclassified Clostridiales 186801|Clostridia J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b HNDODLHM_01273 411467.BACCAP_00164 5.76e-25 98.2 COG4640@1|root,COG4640@2|Bacteria,1VB94@1239|Firmicutes,24N0R@186801|Clostridia,269MN@186813|unclassified Clostridiales 186801|Clostridia S Domain of unknown function (DUF4234) - - - - - - - - - - - - DUF4234,zinc_ribbon_2 HNDODLHM_01274 585394.RHOM_02160 5.35e-28 106.0 2DNQ7@1|root,32YJ2@2|Bacteria,1VFJY@1239|Firmicutes,24S09@186801|Clostridia 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - DUF2752 HNDODLHM_01276 428125.CLOLEP_01281 3.41e-284 785.0 COG0516@1|root,COG0517@1|root,COG0516@2|Bacteria,COG0517@2|Bacteria,1TNZ1@1239|Firmicutes,247PS@186801|Clostridia,3WGWJ@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth guaB - 1.1.1.205 ko:K00088 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 M00050 R01130,R08240 RC00143,RC02207 ko00000,ko00001,ko00002,ko01000,ko04147 - - - CBS,IMPDH,NMO HNDODLHM_01277 697329.Rumal_2867 7.86e-134 389.0 COG1940@1|root,COG1940@2|Bacteria,1TPKW@1239|Firmicutes,248U9@186801|Clostridia,3WHCD@541000|Ruminococcaceae 186801|Clostridia GK ROK family glcK - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - ROK HNDODLHM_01283 1121334.KB911066_gene970 4.33e-30 113.0 COG0642@1|root,COG2205@2|Bacteria,1VNVZ@1239|Firmicutes,24VI6@186801|Clostridia 186801|Clostridia T protein histidine kinase activity - - - - - - - - - - - - Usp HNDODLHM_01284 1120746.CCNL01000017_gene3292 1.56e-69 213.0 COG0102@1|root,COG0102@2|Bacteria,2NPCI@2323|unclassified Bacteria 2|Bacteria J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly rplM GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070180,GO:0071704,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - ko:K02871 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L13 HNDODLHM_01285 428125.CLOLEP_00277 6.25e-83 246.0 COG0103@1|root,COG0103@2|Bacteria,1V3MQ@1239|Firmicutes,24H94@186801|Clostridia,3WIS1@541000|Ruminococcaceae 186801|Clostridia J Belongs to the universal ribosomal protein uS9 family rpsI - - ko:K02996 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S9 HNDODLHM_01286 411462.DORLON_01741 9.13e-44 148.0 COG2246@1|root,COG2246@2|Bacteria,1V7CF@1239|Firmicutes,24KKV@186801|Clostridia,27WTT@189330|Dorea 186801|Clostridia S GtrA-like protein - - - - - - - - - - - - GtrA HNDODLHM_01287 511680.BUTYVIB_01614 5.54e-132 385.0 COG0463@1|root,COG0463@2|Bacteria,1TPR3@1239|Firmicutes,248Q5@186801|Clostridia,4BXYN@830|Butyrivibrio 186801|Clostridia M Glycosyltransferase like family 2 - - - ko:K20534 - - - - ko00000,ko01000,ko01005,ko02000 4.D.2.1.9 GT2 - Glycos_transf_2 HNDODLHM_01289 1341157.RF007C_14565 1.89e-167 520.0 COG4485@1|root,COG4485@2|Bacteria,1TRR1@1239|Firmicutes,24BHM@186801|Clostridia,3WHJ5@541000|Ruminococcaceae 186801|Clostridia S Bacterial membrane protein YfhO - - - - - - - - - - - - GtrA,YfhO HNDODLHM_01290 1160721.RBI_I00589 1.97e-79 262.0 COG2931@1|root,COG2931@2|Bacteria 2|Bacteria Q calcium- and calmodulin-responsive adenylate cyclase activity - - - - - - - - - - - - Collagen,LRR_5,YadA_anchor HNDODLHM_01291 1160721.RBI_I00590 2.1e-128 366.0 COG1309@1|root,COG1309@2|Bacteria,1VE7E@1239|Firmicutes,24Q2X@186801|Clostridia,3WQE9@541000|Ruminococcaceae 186801|Clostridia K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N HNDODLHM_01292 658086.HMPREF0994_06805 1.15e-170 488.0 COG5002@1|root,COG5002@2|Bacteria,1TPSK@1239|Firmicutes,25FJK@186801|Clostridia 186801|Clostridia T ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - - - - - - - - - - HAMP,HATPase_c,HisKA HNDODLHM_01293 658086.HMPREF0994_06806 1.64e-125 361.0 COG0745@1|root,COG0745@2|Bacteria,1TSRR@1239|Firmicutes,24AG3@186801|Clostridia,27M23@186928|unclassified Lachnospiraceae 186801|Clostridia K Transcriptional regulatory protein, C terminal cutR - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_01294 658086.HMPREF0994_06808 3.06e-166 471.0 COG0348@1|root,COG0348@2|Bacteria,1TPHF@1239|Firmicutes,247KH@186801|Clostridia,27K6Y@186928|unclassified Lachnospiraceae 186801|Clostridia C 4Fe-4S binding domain - - - - - - - - - - - - Fer4,Fer4_5 HNDODLHM_01295 411483.FAEPRAA2165_01779 5.67e-126 370.0 COG0526@1|root,COG0526@2|Bacteria,1UY9A@1239|Firmicutes,24C03@186801|Clostridia,3WIRP@541000|Ruminococcaceae 186801|Clostridia CO Redoxin - - - - - - - - - - - - AhpC-TSA,Redoxin HNDODLHM_01296 592026.GCWU0000282_002049 2.09e-60 188.0 COG0346@1|root,COG0346@2|Bacteria,1V4NM@1239|Firmicutes,24HFS@186801|Clostridia 186801|Clostridia E PFAM Glyoxalase bleomycin resistance protein dioxygenase - - 4.4.1.5 ko:K01759 ko00620,map00620 - R02530 RC00004,RC00740 ko00000,ko00001,ko01000 - - - Glyoxalase,Glyoxalase_4 HNDODLHM_01297 1410630.JNKP01000004_gene255 1.12e-15 77.0 COG0454@1|root,COG0456@2|Bacteria,1V77V@1239|Firmicutes,24MDJ@186801|Clostridia,27MDF@186928|unclassified Lachnospiraceae 186801|Clostridia K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 HNDODLHM_01298 457412.RSAG_02475 1.05e-279 769.0 COG0733@1|root,COG0733@2|Bacteria,1TP6B@1239|Firmicutes,2485D@186801|Clostridia,3WHBC@541000|Ruminococcaceae 186801|Clostridia P Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family - - - ko:K03308 - - - - ko00000 2.A.22.4,2.A.22.5 - - SNF HNDODLHM_01299 457412.RSAG_02474 1.85e-140 404.0 COG0583@1|root,COG0583@2|Bacteria,1TRYW@1239|Firmicutes,249AX@186801|Clostridia,3WJR3@541000|Ruminococcaceae 186801|Clostridia K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate HNDODLHM_01300 1121335.Clst_2046 3.17e-09 53.5 COG3546@1|root,COG3546@2|Bacteria 2|Bacteria P catalase activity cotJC - - ko:K06334,ko:K07217 - - - - ko00000 - - - Mn_catalase HNDODLHM_01301 272563.CD630_05970 1.87e-12 64.3 2E34J@1|root,32Y4N@2|Bacteria,1VESM@1239|Firmicutes,24QZX@186801|Clostridia 186801|Clostridia S COG NOG18028 non supervised orthologous group cotJB - - ko:K06333 - - - - ko00000 - - - CotJB HNDODLHM_01302 411470.RUMGNA_03224 1.59e-08 52.4 2EHCX@1|root,33B4S@2|Bacteria,1VKA0@1239|Firmicutes 1239|Firmicutes S Spore coat associated protein JA (CotJA) - - - - - - - - - - - - CotJA HNDODLHM_01303 411463.EUBVEN_02418 5.13e-73 231.0 COG3859@1|root,COG3859@2|Bacteria,1V1WX@1239|Firmicutes,24E4Z@186801|Clostridia,25WJ9@186806|Eubacteriaceae 186801|Clostridia S proton-coupled thiamine transporter YuaJ yuaJ - - ko:K16789 - - - - ko00000,ko02000 2.A.88.3 - - Thia_YuaJ HNDODLHM_01304 471875.RUMLAC_00382 4.69e-107 318.0 COG2116@1|root,COG2116@2|Bacteria,1TRTT@1239|Firmicutes,24BU5@186801|Clostridia,3WJFS@541000|Ruminococcaceae 186801|Clostridia P Formate nitrite fnt - - ko:K21993 - - - - ko00000,ko02000 1.A.16.2 - - Form_Nir_trans HNDODLHM_01305 1120746.CCNL01000017_gene3231 0.0 917.0 COG2183@1|root,COG2183@2|Bacteria,2NP2S@2323|unclassified Bacteria 2|Bacteria K Tex-like protein N-terminal domain yhgF GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - ko:K06959 - - - - ko00000 - - - HHH_3,S1,Tex_N,Tex_YqgF HNDODLHM_01306 59374.Fisuc_3088 7.54e-96 284.0 COG1073@1|root,COG1073@2|Bacteria 2|Bacteria S thiolester hydrolase activity - - - ko:K06889 - - - - ko00000 - - - Hydrolase_4 HNDODLHM_01307 411467.BACCAP_01257 1.24e-43 146.0 COG1321@1|root,COG1321@2|Bacteria,1V3IS@1239|Firmicutes,24MSE@186801|Clostridia,26931@186813|unclassified Clostridiales 186801|Clostridia K Psort location Cytoplasmic, score - - - - - - - - - - - - Fe_dep_repr_C,Fe_dep_repress HNDODLHM_01308 588581.Cpap_3464 8.03e-32 112.0 COG1918@1|root,COG1918@2|Bacteria,1VEYA@1239|Firmicutes,24QKX@186801|Clostridia,3WKEV@541000|Ruminococcaceae 186801|Clostridia P FeoA - - - ko:K04758 - - - - ko00000,ko02000 - - - FeoA HNDODLHM_01309 877414.ATWA01000007_gene189 1.63e-39 131.0 COG1918@1|root,COG1918@2|Bacteria,1VEHC@1239|Firmicutes,24QKE@186801|Clostridia,269AQ@186813|unclassified Clostridiales 186801|Clostridia P FeoA feoA - - ko:K04758 - - - - ko00000,ko02000 - - - FeoA HNDODLHM_01310 1160721.RBI_I00823 0.0 1241.0 COG0370@1|root,COG0370@2|Bacteria,1TP7E@1239|Firmicutes,24885@186801|Clostridia,3WGIX@541000|Ruminococcaceae 186801|Clostridia P transporter of a GTP-driven Fe(2 ) uptake system feoB - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoB_C,FeoB_N,Gate HNDODLHM_01312 742735.HMPREF9467_02854 6.76e-35 124.0 COG2608@1|root,COG2608@2|Bacteria,1VEMB@1239|Firmicutes,24REK@186801|Clostridia,220T7@1506553|Lachnoclostridium 186801|Clostridia P Heavy-metal-associated domain - - - - - - - - - - - - HMA,P12 HNDODLHM_01313 610130.Closa_0591 1.51e-101 308.0 COG2207@1|root,COG2207@2|Bacteria,1TSFI@1239|Firmicutes,249B8@186801|Clostridia,22112@1506553|Lachnoclostridium 186801|Clostridia K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 HNDODLHM_01314 610130.Closa_0593 5.16e-74 227.0 2BYWB@1|root,32SGE@2|Bacteria,1V4H1@1239|Firmicutes,25CVU@186801|Clostridia,220BR@1506553|Lachnoclostridium 186801|Clostridia S Protein of unknown function (DUF3793) - - - - - - - - - - - - DUF3793 HNDODLHM_01315 1121115.AXVN01000004_gene1967 2.23e-68 209.0 COG0716@1|root,COG0716@2|Bacteria,1V6D7@1239|Firmicutes,24J7W@186801|Clostridia,3Y024@572511|Blautia 186801|Clostridia C Flavodoxin domain - - - - - - - - - - - - Flavodoxin_1 HNDODLHM_01316 411473.RUMCAL_00117 3.27e-211 592.0 COG1171@1|root,COG1171@2|Bacteria,1TP22@1239|Firmicutes,248D5@186801|Clostridia,3WH1M@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA ilvA - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - ACT,PALP HNDODLHM_01317 1160721.RBI_I01660 9.08e-67 204.0 COG0251@1|root,COG0251@2|Bacteria,1V6HG@1239|Firmicutes,24J8Y@186801|Clostridia,3WJG0@541000|Ruminococcaceae 186801|Clostridia J endoribonuclease L-PSP - - 3.5.99.10 ko:K09022 - - R11098,R11099 RC03275,RC03354 ko00000,ko01000 - - - Ribonuc_L-PSP HNDODLHM_01318 428125.CLOLEP_01532 9.5e-219 613.0 COG0192@1|root,COG0192@2|Bacteria,1TPCV@1239|Firmicutes,248QF@186801|Clostridia,3WGI3@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme metK - 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N HNDODLHM_01319 33035.JPJF01000013_gene4622 3.94e-75 228.0 COG1247@1|root,COG1247@2|Bacteria,1V3XH@1239|Firmicutes,24HCN@186801|Clostridia,3Y0EN@572511|Blautia 186801|Clostridia M Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1 HNDODLHM_01320 1476973.JMMB01000007_gene2253 1.6e-49 159.0 COG1917@1|root,COG1917@2|Bacteria,1VGJQ@1239|Firmicutes,25EGC@186801|Clostridia 186801|Clostridia S Cupin domain protein - - - - - - - - - - - - Cupin_2 HNDODLHM_01324 1321372.AQQB01000003_gene1485 3.95e-117 347.0 COG1475@1|root,COG1475@2|Bacteria,1TR7C@1239|Firmicutes,4IJ2M@91061|Bacilli,1WTIK@1307|Streptococcus suis 91061|Bacilli K ParB-like nuclease domain parB_1 - - - - - - - - - - - ParBc HNDODLHM_01325 999413.HMPREF1094_00603 2.49e-117 345.0 COG1192@1|root,COG1192@2|Bacteria,1TP8S@1239|Firmicutes,3VPAB@526524|Erysipelotrichia 526524|Erysipelotrichia D CobQ CobB MinD ParA nucleotide binding domain protein - - - - - - - - - - - - AAA_31 HNDODLHM_01326 702459.BBPR_0282 5.22e-08 67.0 COG2304@1|root,COG4932@1|root,COG2304@2|Bacteria,COG4932@2|Bacteria,2I2FM@201174|Actinobacteria,4CZ4I@85004|Bifidobacteriales 201174|Actinobacteria M domain protein - - - - - - - - - - - - Cna_B,FctA,PA14,VWA_2 HNDODLHM_01327 401473.BDP_1876 0.000538 51.6 COG4932@1|root,COG4932@2|Bacteria,2GWNY@201174|Actinobacteria 201174|Actinobacteria M Spy0128-like isopeptide containing domain - - - - - - - - - - - - FctA HNDODLHM_01328 1280698.AUJS01000004_gene2868 6.78e-64 211.0 COG3764@1|root,COG3764@2|Bacteria,1UN9R@1239|Firmicutes,24CEQ@186801|Clostridia,27WSA@189330|Dorea 186801|Clostridia M Sortase family - - 3.4.22.70 ko:K07284 - - - - ko00000,ko01000,ko01002,ko01011 - - - Sortase HNDODLHM_01329 1280692.AUJL01000019_gene890 2.49e-34 130.0 COG3764@1|root,COG3764@2|Bacteria,1V83Z@1239|Firmicutes,24I6J@186801|Clostridia,36KCG@31979|Clostridiaceae 186801|Clostridia M Sortase family - - 3.4.22.70 ko:K07284 - - - - ko00000,ko01000,ko01002,ko01011 - - - Sortase HNDODLHM_01333 1121344.JHZO01000006_gene1882 7.08e-200 568.0 COG2239@1|root,COG2239@2|Bacteria,1TP4V@1239|Firmicutes,2481R@186801|Clostridia,3WHBI@541000|Ruminococcaceae 186801|Clostridia P Acts as a magnesium transporter mgtE - - ko:K06213 - - - - ko00000,ko02000 1.A.26.1 - - CBS,MgtE,MgtE_N HNDODLHM_01334 411473.RUMCAL_02159 6.36e-131 380.0 COG0685@1|root,COG0685@2|Bacteria,1TQFE@1239|Firmicutes,247ZK@186801|Clostridia,3WH1U@541000|Ruminococcaceae 186801|Clostridia E 5,10-methylenetetrahydrofolate reductase metF - 1.5.1.20 ko:K00297 ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523 M00377 R01224,R07168 RC00081 ko00000,ko00001,ko00002,ko01000 - - - MTHFR HNDODLHM_01335 483218.BACPEC_01013 8.35e-65 207.0 COG1410@1|root,COG1410@2|Bacteria,1V7JJ@1239|Firmicutes,24AE1@186801|Clostridia,269GX@186813|unclassified Clostridiales 186801|Clostridia E Vitamin B12 dependent methionine synthase, activation domain metH2 - 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - Met_synt_B12 HNDODLHM_01336 246199.CUS_7787 0.0 979.0 COG0646@1|root,COG1410@1|root,COG0646@2|Bacteria,COG1410@2|Bacteria,1TPYV@1239|Firmicutes,248JB@186801|Clostridia,3WH5Y@541000|Ruminococcaceae 186801|Clostridia E Psort location Cytoplasmic, score metH - 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,B12-binding_2,Pterin_bind,S-methyl_trans HNDODLHM_01337 875454.BAEW01000002_gene430 1.45e-13 70.5 COG4416@1|root,COG4416@2|Bacteria,1VEMD@1239|Firmicutes,24MRR@186801|Clostridia,22HV7@1570339|Peptoniphilaceae 186801|Clostridia S COG NOG18757 non supervised orthologous group - - - - - - - - - - - - - HNDODLHM_01338 397287.C807_00635 1.98e-18 85.1 COG0534@1|root,COG0534@2|Bacteria,1TNZN@1239|Firmicutes,247YX@186801|Clostridia,27JUF@186928|unclassified Lachnospiraceae 186801|Clostridia V MatE - - - - - - - - - - - - MatE HNDODLHM_01339 428125.CLOLEP_02455 0.0 1914.0 COG0674@1|root,COG1013@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1013@2|Bacteria,COG1014@2|Bacteria,1TQJ2@1239|Firmicutes,248FW@186801|Clostridia,3WH0Y@541000|Ruminococcaceae 186801|Clostridia C Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin nifJ - 1.2.7.1 ko:K03737 ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200 M00173,M00307 R01196,R10866 RC00004,RC02742 br01601,ko00000,ko00001,ko00002,ko01000 - - - EKR,Fer4_16,Fer4_7,PFOR_II,POR,POR_N,TPP_enzyme_C HNDODLHM_01341 460265.Mnod_0129 3.65e-65 219.0 COG2801@1|root,COG2801@2|Bacteria,1N207@1224|Proteobacteria,2UEQQ@28211|Alphaproteobacteria 28211|Alphaproteobacteria L Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - ko:K07497 - - - - ko00000 - - - HTH_28,HTH_32,LZ_Tnp_IS481,rve,rve_3 HNDODLHM_01342 1120746.CCNL01000017_gene2970 1.2e-191 545.0 COG0044@1|root,COG0044@2|Bacteria,2NNWP@2323|unclassified Bacteria 2|Bacteria F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily pyrC GO:0003674,GO:0003824,GO:0004038,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0019439,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 HNDODLHM_01344 411473.RUMCAL_01644 2.4e-299 833.0 COG0449@1|root,COG0449@2|Bacteria,1TPGU@1239|Firmicutes,248F8@186801|Clostridia,3WGUC@541000|Ruminococcaceae 186801|Clostridia M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source glmS - 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - GATase_6,SIS HNDODLHM_01345 1410670.JHXF01000001_gene2655 2.86e-246 701.0 COG1086@1|root,COG1086@2|Bacteria,1TR3W@1239|Firmicutes,247PW@186801|Clostridia,3WGZ4@541000|Ruminococcaceae 186801|Clostridia GM Polysaccharide biosynthesis protein capD - - - - - - - - - - - CoA_binding_3,Polysacc_synt_2 HNDODLHM_01346 411467.BACCAP_00192 1.11e-49 172.0 COG1408@1|root,COG1408@2|Bacteria,1UU17@1239|Firmicutes,248PS@186801|Clostridia,2699X@186813|unclassified Clostridiales 186801|Clostridia S Calcineurin-like phosphoesterase - - - ko:K07098 - - - - ko00000 - - - Metallophos HNDODLHM_01347 1408823.AXUS01000007_gene2970 8.69e-11 70.5 COG2207@1|root,COG3664@1|root,COG2207@2|Bacteria,COG3664@2|Bacteria,1TQGI@1239|Firmicutes,2490Q@186801|Clostridia 186801|Clostridia G PFAM glycoside hydrolase family 39 - - 3.2.1.37 ko:K01198 ko00520,ko01100,map00520,map01100 - R01433 RC00467 ko00000,ko00001,ko01000 - GH43 - AraC_binding,Cupin_2,Glyco_hydro_39,HTH_18 HNDODLHM_01348 1408321.JNJD01000008_gene1949 1.08e-65 211.0 COG0062@1|root,COG0062@2|Bacteria,1VWCC@1239|Firmicutes,2513Y@186801|Clostridia,27UM7@186928|unclassified Lachnospiraceae 186801|Clostridia G YjeF-related protein N-terminus - - - - - - - - - - - - YjeF_N HNDODLHM_01349 641112.ACOK01000115_gene2207 1.11e-44 157.0 28RJ8@1|root,2ZDY4@2|Bacteria,1V64R@1239|Firmicutes,25GI1@186801|Clostridia,3WSFI@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - - HNDODLHM_01350 1469948.JPNB01000001_gene447 6.42e-87 276.0 2F3Y4@1|root,33WQ6@2|Bacteria,1UKAG@1239|Firmicutes,24JVD@186801|Clostridia 186801|Clostridia M Psort location CytoplasmicMembrane, score 9.99 - - - - - - - - - - - - Acyl_transf_3 HNDODLHM_01352 428125.CLOLEP_03715 5.98e-56 192.0 COG0110@1|root,COG0110@2|Bacteria,1V23V@1239|Firmicutes,24GGM@186801|Clostridia,3WJ74@541000|Ruminococcaceae 186801|Clostridia S COG COG0110 Acetyltransferase (isoleucine patch superfamily) - - - - - - - - - - - - ATPgrasp_ST HNDODLHM_01353 702450.CUW_1624 2.86e-64 217.0 COG0787@1|root,COG0787@2|Bacteria,1TNYY@1239|Firmicutes,3VPKC@526524|Erysipelotrichia 526524|Erysipelotrichia M Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids alr - 5.1.1.1 ko:K01775 ko00473,ko01100,ko01502,map00473,map01100,map01502 - R00401 RC00285 ko00000,ko00001,ko01000,ko01011 - - - Ala_racemase_C,Ala_racemase_N HNDODLHM_01354 697329.Rumal_1534 6.38e-50 191.0 COG5279@1|root,COG5279@2|Bacteria 2|Bacteria D protein involved in cytokinesis, contains TGc (transglutaminase protease-like) domain - - - - - - - - - - - - Cadherin-like,LRR_5,Transglut_core HNDODLHM_01355 428125.CLOLEP_00331 1.1e-33 118.0 COG1609@1|root,COG1609@2|Bacteria,1VADF@1239|Firmicutes,24MXI@186801|Clostridia,3WKHX@541000|Ruminococcaceae 186801|Clostridia K sporulation transcriptional regulator SpoIIID spoIIID - - ko:K06283 - - - - ko00000,ko03000 - - - SpoIIID HNDODLHM_01356 435591.BDI_1838 5.02e-193 546.0 COG0399@1|root,COG0399@2|Bacteria,4NFQ8@976|Bacteroidetes,2FMKJ@200643|Bacteroidia,22ZYB@171551|Porphyromonadaceae 976|Bacteroidetes E Belongs to the DegT DnrJ EryC1 family - - 2.6.1.59 ko:K02805 - - - - ko00000,ko01000,ko01007 - - - DegT_DnrJ_EryC1 HNDODLHM_01357 471875.RUMLAC_00719 2.03e-19 84.0 arCOG12654@1|root,330YI@2|Bacteria,1VGQU@1239|Firmicutes,24N61@186801|Clostridia,3WQ3R@541000|Ruminococcaceae 186801|Clostridia S HIRAN domain - - - - - - - - - - - - HIRAN HNDODLHM_01359 663952.SDD27957_04550 4.91e-28 117.0 COG2207@1|root,COG2207@2|Bacteria,1UZG6@1239|Firmicutes,4HCQS@91061|Bacilli,1M9XV@119603|Streptococcus dysgalactiae group 91061|Bacilli K AraC-type DNA-binding domain-containing proteins bglC - - - - - - - - - - - AraC_binding,HTH_18,HTH_AraC HNDODLHM_01360 1232443.BAIA02000143_gene1661 1.13e-117 350.0 COG2378@1|root,COG2378@2|Bacteria,1TSA2@1239|Firmicutes,247S2@186801|Clostridia,26844@186813|unclassified Clostridiales 186801|Clostridia K WYL domain - - - - - - - - - - - - WYL HNDODLHM_01361 1120746.CCNL01000014_gene2185 2.43e-62 207.0 COG0679@1|root,COG0679@2|Bacteria 2|Bacteria S auxin-activated signaling pathway mleP3 - - ko:K07088 - - - - ko00000 - - - Mem_trans HNDODLHM_01362 1408323.JQKK01000012_gene880 1.28e-05 48.1 2BCWF@1|root,326H8@2|Bacteria,1USE0@1239|Firmicutes,25AD7@186801|Clostridia,27Q7W@186928|unclassified Lachnospiraceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01363 180332.JTGN01000005_gene2779 4.04e-215 607.0 COG0372@1|root,COG0372@2|Bacteria,1TPPS@1239|Firmicutes,24865@186801|Clostridia 186801|Clostridia C citrate synthase - - 2.3.3.1 ko:K01647 ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00740 R00351 RC00004,RC00067 br01601,ko00000,ko00001,ko00002,ko01000 - - - Citrate_synt HNDODLHM_01364 1449050.JNLE01000003_gene2028 1.56e-274 787.0 COG0366@1|root,COG3291@1|root,COG0366@2|Bacteria,COG3291@2|Bacteria,1V0U1@1239|Firmicutes,24ZQ4@186801|Clostridia 186801|Clostridia G Alpha amylase, catalytic domain - - - - - - - - - - - - Alpha-amylase HNDODLHM_01365 585394.RHOM_02225 9.75e-124 367.0 COG1181@1|root,COG1181@2|Bacteria,1TP2Y@1239|Firmicutes,248CR@186801|Clostridia 186801|Clostridia F Belongs to the D-alanine--D-alanine ligase family ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N HNDODLHM_01366 397288.C806_02959 1.41e-147 435.0 COG0770@1|root,COG0770@2|Bacteria,1VT78@1239|Firmicutes,25100@186801|Clostridia,27K9X@186928|unclassified Lachnospiraceae 186801|Clostridia M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M HNDODLHM_01367 411902.CLOBOL_04492 2.17e-215 611.0 COG0147@1|root,COG0147@2|Bacteria,1TQAP@1239|Firmicutes,24946@186801|Clostridia,21XU4@1506553|Lachnoclostridium 186801|Clostridia EH Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia trpE - 4.1.3.27 ko:K01657 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Anth_synt_I_N,Chorismate_bind HNDODLHM_01368 1298920.KI911353_gene4141 8.57e-91 270.0 COG0512@1|root,COG0512@2|Bacteria,1TT9R@1239|Firmicutes,24FR0@186801|Clostridia,21YT9@1506553|Lachnoclostridium 186801|Clostridia EH Peptidase C26 trpG - 4.1.3.27 ko:K01658 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - GATase HNDODLHM_01369 913865.DOT_2164 1.37e-142 413.0 COG0547@1|root,COG0547@2|Bacteria,1TP8U@1239|Firmicutes,247WY@186801|Clostridia,2600U@186807|Peptococcaceae 186801|Clostridia F Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD - 2.4.2.18,4.1.3.27 ko:K00766,ko:K13497 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R00985,R00986,R01073 RC00010,RC00440,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 HNDODLHM_01370 1120933.ATUY01000007_gene575 4.15e-113 332.0 COG0134@1|root,COG0134@2|Bacteria,2GIVV@201174|Actinobacteria,4D348@85005|Actinomycetales 201174|Actinobacteria E Indole-3-glycerol phosphate synthase trpC GO:0000162,GO:0000287,GO:0003674,GO:0003824,GO:0004425,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016020,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043167,GO:0043169,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046219,GO:0046391,GO:0046394,GO:0046483,GO:0046872,GO:0071704,GO:0071944,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.48 ko:K01609 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03508 RC00944 ko00000,ko00001,ko00002,ko01000 - - - IGPS HNDODLHM_01371 509191.AEDB02000098_gene3535 1.36e-241 669.0 COG0133@1|root,COG0133@2|Bacteria,1TPI3@1239|Firmicutes,24881@186801|Clostridia,3WGIV@541000|Ruminococcaceae 186801|Clostridia E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB - 4.2.1.20 ko:K01696 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP HNDODLHM_01372 1298920.KI911353_gene4146 3.64e-126 365.0 COG0159@1|root,COG0159@2|Bacteria,1TPXA@1239|Firmicutes,248M2@186801|Clostridia,21ZDY@1506553|Lachnoclostridium 186801|Clostridia E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate trpA - 4.2.1.20 ko:K01695 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - Trp_syntA HNDODLHM_01373 1160721.RBI_I01463 7.45e-131 375.0 COG0846@1|root,COG0846@2|Bacteria,1TQKD@1239|Firmicutes,2491J@186801|Clostridia,3WGSY@541000|Ruminococcaceae 186801|Clostridia K NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form cobB - - ko:K12410 - - - - ko00000,ko01000 - - - SIR2 HNDODLHM_01374 1105031.HMPREF1141_0671 1.65e-27 102.0 COG0268@1|root,COG0268@2|Bacteria,1VEGX@1239|Firmicutes,24QNX@186801|Clostridia,36KIE@31979|Clostridiaceae 186801|Clostridia J Binds directly to 16S ribosomal RNA rpsT - - ko:K02968 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S20p HNDODLHM_01376 445973.CLOBAR_00924 6.68e-17 75.9 2E7YJ@1|root,33A8K@2|Bacteria,1VQP8@1239|Firmicutes,24QA7@186801|Clostridia,25U19@186804|Peptostreptococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01377 1415774.U728_2869 1.27e-47 172.0 COG0727@1|root,COG0727@2|Bacteria,1TSB6@1239|Firmicutes,24AQ9@186801|Clostridia,36EKJ@31979|Clostridiaceae 186801|Clostridia S N-methylation of lysine residues in flagellin K00599 - - - ko:K18475 - - - - ko00000,ko01000,ko02035 - - - CxxCxxCC HNDODLHM_01378 1280692.AUJL01000001_gene118 4.81e-142 425.0 COG0642@1|root,COG2205@2|Bacteria,1V10X@1239|Firmicutes,24P7E@186801|Clostridia,36UII@31979|Clostridiaceae 186801|Clostridia T Histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA HNDODLHM_01379 394503.Ccel_0246 1.25e-125 361.0 COG0745@1|root,COG0745@2|Bacteria,1TPZ0@1239|Firmicutes,2484X@186801|Clostridia,36DGI@31979|Clostridiaceae 186801|Clostridia T response regulator, receiver - - - ko:K07775 ko02020,map02020 M00458 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C HNDODLHM_01380 428125.CLOLEP_00267 1.01e-143 412.0 COG1951@1|root,COG1951@2|Bacteria,1TPXQ@1239|Firmicutes,248T7@186801|Clostridia,3WH30@541000|Ruminococcaceae 186801|Clostridia C Hydrolyase, tartrate alpha subunit fumarate domain protein, Fe-S type - - 4.2.1.2 ko:K01677 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - Fumerase HNDODLHM_01381 428125.CLOLEP_00268 1.38e-95 282.0 COG1838@1|root,COG1838@2|Bacteria,1V1CP@1239|Firmicutes,24FRK@186801|Clostridia,3WI2S@541000|Ruminococcaceae 186801|Clostridia C Hydrolyase, tartrate beta subunit fumarate domain protein, Fe-S type fumB - 4.2.1.2 ko:K01678 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - Fumerase_C HNDODLHM_01382 428125.CLOLEP_01836 8.15e-124 362.0 28HAW@1|root,2Z7N4@2|Bacteria,1TPVP@1239|Firmicutes,249H5@186801|Clostridia,3WH85@541000|Ruminococcaceae 186801|Clostridia S COG NOG08824 non supervised orthologous group - - - - - - - - - - - - KilA-N HNDODLHM_01384 556261.HMPREF0240_01326 1.02e-55 177.0 COG0494@1|root,COG0494@2|Bacteria,1UHVA@1239|Firmicutes,24PC0@186801|Clostridia,36K2C@31979|Clostridiaceae 186801|Clostridia L Nudix hydrolase - - 3.6.1.55 ko:K03574 - - - - ko00000,ko01000,ko03400 - - - NUDIX HNDODLHM_01385 428125.CLOLEP_00323 1.73e-86 261.0 COG1974@1|root,COG1974@2|Bacteria,1TQ3H@1239|Firmicutes,24AXJ@186801|Clostridia,3WHGN@541000|Ruminococcaceae 186801|Clostridia K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair lexA - 3.4.21.88 ko:K01356 - M00729 - - ko00000,ko00002,ko01000,ko01002,ko03400 - - - LexA_DNA_bind,Peptidase_S24 HNDODLHM_01386 428125.CLOLEP_01895 1.05e-83 252.0 COG0503@1|root,COG0503@2|Bacteria,1V1XS@1239|Firmicutes,25QBJ@186801|Clostridia,3WIP6@541000|Ruminococcaceae 186801|Clostridia F Psort location Cytoplasmic, score - - 2.4.2.7 ko:K00759 ko00230,ko01100,map00230,map01100 - R00190,R01229,R04378 RC00063 ko00000,ko00001,ko01000,ko04147 - - - Pribosyltran HNDODLHM_01387 428125.CLOLEP_01894 8.87e-49 158.0 COG0537@1|root,COG0537@2|Bacteria,1V9ZJ@1239|Firmicutes,24JCW@186801|Clostridia,3WJJW@541000|Ruminococcaceae 186801|Clostridia FG Psort location Cytoplasmic, score hinT - - ko:K02503 - - - - ko00000,ko04147 - - - HIT HNDODLHM_01388 428125.CLOLEP_00450 2.61e-62 202.0 COG0344@1|root,COG0344@2|Bacteria,1VA3J@1239|Firmicutes,24JA2@186801|Clostridia,3WJFE@541000|Ruminococcaceae 186801|Clostridia I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP plsY - 2.3.1.15 ko:K08591 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - G3P_acyltransf HNDODLHM_01389 428125.CLOLEP_00451 8.13e-231 645.0 COG1160@1|root,COG1160@2|Bacteria,1TPNM@1239|Firmicutes,2493T@186801|Clostridia,3WGNU@541000|Ruminococcaceae 186801|Clostridia S GTPase that plays an essential role in the late steps of ribosome biogenesis der - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 HNDODLHM_01390 428125.CLOLEP_00452 3.01e-169 489.0 COG1625@1|root,COG1625@2|Bacteria,1TSFU@1239|Firmicutes,247JK@186801|Clostridia,3WGI9@541000|Ruminococcaceae 186801|Clostridia C FeS-containing Cyanobacterial-specific oxidoreductase - - - - - - - - - - - - DUF512 HNDODLHM_01391 428125.CLOLEP_00453 1.44e-19 80.5 COG0333@1|root,COG0333@2|Bacteria,1VEFI@1239|Firmicutes,24QM0@186801|Clostridia,3WKID@541000|Ruminococcaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bL32 family rpmF - - ko:K02911 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_L32p HNDODLHM_01392 1160721.RBI_II00028 4.94e-37 131.0 COG1399@1|root,COG1399@2|Bacteria,1VEXU@1239|Firmicutes,24RKT@186801|Clostridia,3WJHF@541000|Ruminococcaceae 186801|Clostridia S metal-binding, possibly nucleic acid-binding protein - - - ko:K07040 - - - - ko00000 - - - DUF177 HNDODLHM_01393 1029718.SFBM_1150 2.36e-114 333.0 COG1244@1|root,COG1244@2|Bacteria,1UZ5M@1239|Firmicutes,24AIM@186801|Clostridia,36G6G@31979|Clostridiaceae 186801|Clostridia S Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - - HNDODLHM_01394 1203606.HMPREF1526_02400 3.24e-101 300.0 COG1738@1|root,COG1738@2|Bacteria,1TSAY@1239|Firmicutes,24EFG@186801|Clostridia,36Q0T@31979|Clostridiaceae 186801|Clostridia S Involved in the import of queuosine (Q) precursors, required for Q precursor salvage - - - ko:K09125 - - - - ko00000 - - - Vut_1 HNDODLHM_01396 397291.C804_05571 5.64e-16 87.4 COG4219@1|root,COG4219@2|Bacteria,1TQ0K@1239|Firmicutes,24AVI@186801|Clostridia,27JIN@186928|unclassified Lachnospiraceae 186801|Clostridia KT BlaR1 peptidase M56 - - - - - - - - - - - - Peptidase_M56 HNDODLHM_01398 545696.HOLDEFILI_01435 1.08e-130 391.0 COG1322@1|root,COG1322@2|Bacteria,1TPWI@1239|Firmicutes,3VQCE@526524|Erysipelotrichia 526524|Erysipelotrichia S RmuC domain protein rmuC - - ko:K09760 - - - - ko00000 - - - RmuC HNDODLHM_01399 428125.CLOLEP_02938 3.27e-125 367.0 COG0539@1|root,COG0539@2|Bacteria,1UV93@1239|Firmicutes,249P6@186801|Clostridia,3WH6M@541000|Ruminococcaceae 186801|Clostridia J S1 RNA binding domain protein - - - ko:K02945 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - S1 HNDODLHM_01400 1121334.KB911069_gene1717 2.59e-58 196.0 COG0652@1|root,COG0652@2|Bacteria,1TRHW@1239|Firmicutes,2504A@186801|Clostridia 186801|Clostridia O Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - - - - - - - - - - Pro_isomerase HNDODLHM_01401 1007096.BAGW01000015_gene1041 1.41e-124 364.0 COG0560@1|root,COG0560@2|Bacteria,1TRRS@1239|Firmicutes,249NX@186801|Clostridia,2N6BI@216572|Oscillospiraceae 186801|Clostridia E haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD HNDODLHM_01402 641112.ACOK01000097_gene920 1.1e-117 348.0 COG0714@1|root,COG0714@2|Bacteria,1TPKR@1239|Firmicutes,248IM@186801|Clostridia,3WGAD@541000|Ruminococcaceae 186801|Clostridia S associated with various cellular activities - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 HNDODLHM_01403 1121333.JMLH01000044_gene2666 3.74e-14 79.7 COG1721@1|root,COG1721@2|Bacteria,1VA3G@1239|Firmicutes,3VSAP@526524|Erysipelotrichia 526524|Erysipelotrichia S Protein of unknown function DUF58 - - - - - - - - - - - - DUF58 HNDODLHM_01404 665956.HMPREF1032_02216 7.69e-27 125.0 COG1305@1|root,COG1305@2|Bacteria,1TP8K@1239|Firmicutes,24CZV@186801|Clostridia,3WI6I@541000|Ruminococcaceae 186801|Clostridia E Transglutaminase/protease-like homologues - - - - - - - - - - - - DUF4129,Transglut_core HNDODLHM_01406 1117108.PAALTS15_01857 2.48e-49 162.0 COG3279@1|root,COG3279@2|Bacteria,1VD10@1239|Firmicutes,4HMF3@91061|Bacilli,274DW@186822|Paenibacillaceae 91061|Bacilli K LytTr DNA-binding domain - - - - - - - - - - - - LytTR HNDODLHM_01408 1278311.AUAL01000016_gene1380 4.88e-112 333.0 COG1131@1|root,COG1131@2|Bacteria,3WTDR@544448|Tenericutes 544448|Tenericutes V abc transporter atp-binding protein - - - ko:K11050 ko02010,map02010 M00298 - - ko00000,ko00001,ko00002,ko02000 3.A.1.130 - - ABC_tran HNDODLHM_01409 1408321.JNJD01000009_gene1864 6.15e-68 221.0 COG0842@1|root,COG0842@2|Bacteria,1TSH0@1239|Firmicutes,24BEN@186801|Clostridia,27MHV@186928|unclassified Lachnospiraceae 186801|Clostridia V ABC-2 type transporter - - - ko:K01992,ko:K11051 ko02010,map02010 M00254,M00298 - - ko00000,ko00001,ko00002,ko02000 3.A.1,3.A.1.130 - - ABC2_membrane,ABC2_membrane_3 HNDODLHM_01410 1160721.RBI_I01026 1.71e-202 568.0 COG0620@1|root,COG0620@2|Bacteria,1TPDQ@1239|Firmicutes,248U0@186801|Clostridia,3WH02@541000|Ruminococcaceae 186801|Clostridia E Psort location Cytoplasmic, score - - - - - - - - - - - - Meth_synt_2 HNDODLHM_01411 411461.DORFOR_01751 9.78e-147 421.0 COG0583@1|root,COG0583@2|Bacteria,1TP3E@1239|Firmicutes,248HI@186801|Clostridia,27WHM@189330|Dorea 186801|Clostridia K Psort location Cytoplasmic, score 9.98 - - - - - - - - - - - - HTH_1,LysR_substrate HNDODLHM_01412 883156.HMPREF9282_01288 2.93e-85 255.0 COG0778@1|root,COG0778@2|Bacteria,1V4K6@1239|Firmicutes,4H4AS@909932|Negativicutes 909932|Negativicutes C Nitroreductase family - - - - - - - - - - - - Nitroreductase HNDODLHM_01413 1211844.CBLM010000028_gene1902 6.61e-65 204.0 COG0778@1|root,COG0778@2|Bacteria,1V3ZT@1239|Firmicutes,3VQKT@526524|Erysipelotrichia 526524|Erysipelotrichia C Nitroreductase family - - - - - - - - - - - - Nitroreductase HNDODLHM_01414 1232446.BAIE02000072_gene3459 8.83e-16 84.0 COG0679@1|root,COG0679@2|Bacteria,1UY4N@1239|Firmicutes,24ACC@186801|Clostridia,26AFB@186813|unclassified Clostridiales 186801|Clostridia S Membrane transport protein - - - ko:K07088 - - - - ko00000 - - - Mem_trans HNDODLHM_01415 428125.CLOLEP_02547 7.58e-21 83.6 2C3DI@1|root,33B22@2|Bacteria,1VK4D@1239|Firmicutes,258DN@186801|Clostridia,3WMHB@541000|Ruminococcaceae 186801|Clostridia S Domain of Unknown Function (DUF1540) - - - - - - - - - - - - DUF1540 HNDODLHM_01416 428125.CLOLEP_01534 4.48e-27 103.0 2CARW@1|root,33CNX@2|Bacteria,1W1RF@1239|Firmicutes,24X6E@186801|Clostridia,3WQR2@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01418 397290.C810_02057 7.15e-194 547.0 COG0426@1|root,COG0426@2|Bacteria,1TQE9@1239|Firmicutes,249CU@186801|Clostridia,27I60@186928|unclassified Lachnospiraceae 186801|Clostridia C Metallo-beta-lactamase superfamily - - - - - - - - - - - - Flavodoxin_1,Flavodoxin_5,Lactamase_B HNDODLHM_01419 445973.CLOBAR_02074 1.98e-36 132.0 COG3707@1|root,COG3707@2|Bacteria,1V9FH@1239|Firmicutes,24JZU@186801|Clostridia 186801|Clostridia T ANTAR domain protein - - - ko:K22010 - M00839 - - ko00000,ko00002,ko02022 - - - ANTAR,Response_reg HNDODLHM_01420 1160721.RBI_II00014 9.3e-185 522.0 COG0505@1|root,COG0505@2|Bacteria,1TQ8N@1239|Firmicutes,247Q8@186801|Clostridia,3WH1G@541000|Ruminococcaceae 186801|Clostridia F Belongs to the CarA family carA - 6.3.5.5 ko:K01956 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_sm_chain,GATase HNDODLHM_01421 428125.CLOLEP_02638 0.0 2136.0 COG0458@1|root,COG0458@2|Bacteria,1TPID@1239|Firmicutes,2498I@186801|Clostridia,3WG9X@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan carB - 6.3.5.5 ko:K01955 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_L_D2,CPSase_L_D3,DAP_epimerase,MGS HNDODLHM_01422 500632.CLONEX_00534 3.33e-295 816.0 COG0504@1|root,COG0504@2|Bacteria,1TP34@1239|Firmicutes,2482E@186801|Clostridia 186801|Clostridia F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG - 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS01075 CTP_synth_N,GATase HNDODLHM_01423 1160721.RBI_II00016 1.5e-205 578.0 COG0436@1|root,COG0436@2|Bacteria,1TQD6@1239|Firmicutes,24969@186801|Clostridia,3WGFU@541000|Ruminococcaceae 186801|Clostridia H Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate dapL - 2.6.1.83 ko:K10206 ko00300,ko01100,ko01110,ko01130,ko01230,map00300,map01100,map01110,map01130,map01230 M00527 R07613 RC00006,RC01847 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 HNDODLHM_01424 1160721.RBI_I02050 1.18e-309 846.0 COG0423@1|root,COG0423@2|Bacteria,1TP94@1239|Firmicutes,248FB@186801|Clostridia,3WGTU@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the attachment of glycine to tRNA(Gly) glyQS GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 ko:K01880 ko00970,map00970 M00359,M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - HGTP_anticodon,tRNA-synt_2b HNDODLHM_01426 556261.HMPREF0240_03532 9.93e-45 154.0 COG1878@1|root,COG1878@2|Bacteria,1VDFH@1239|Firmicutes,25CZC@186801|Clostridia 186801|Clostridia S Putative cyclase - - 3.5.1.9 ko:K07130 ko00380,ko00630,ko01100,map00380,map00630,map01100 M00038 R00988,R01959,R04911 RC00263,RC00323 ko00000,ko00001,ko00002,ko01000 - - - Cyclase HNDODLHM_01427 428125.CLOLEP_01169 2.44e-61 197.0 COG0546@1|root,COG0546@2|Bacteria,1V3YI@1239|Firmicutes,24HZR@186801|Clostridia,3WJQC@541000|Ruminococcaceae 186801|Clostridia S phosphoglycolate phosphatase, bacterial - - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 HNDODLHM_01428 1121296.JONJ01000005_gene1219 8.47e-94 280.0 COG1636@1|root,COG1636@2|Bacteria,1TT7H@1239|Firmicutes,248EA@186801|Clostridia,21YQV@1506553|Lachnoclostridium 186801|Clostridia C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) queH - 1.17.99.6 ko:K09765 - - - - ko00000,ko01000,ko03016 - - - DUF208 HNDODLHM_01429 1280679.ATVX01000016_gene3315 4.3e-240 679.0 COG1080@1|root,COG1080@2|Bacteria,1TPK8@1239|Firmicutes,248QP@186801|Clostridia,4BXQH@830|Butyrivibrio 186801|Clostridia G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) ptsP - 2.7.3.9,2.7.9.2 ko:K01007,ko:K08483 ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,ko02060,map00620,map00680,map00720,map01100,map01120,map01200,map02060 M00173,M00374 R00199 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko02000 8.A.7 - - PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C HNDODLHM_01430 1042156.CXIVA_17750 5.87e-35 121.0 COG1925@1|root,COG1925@2|Bacteria,1VA0R@1239|Firmicutes,24QIP@186801|Clostridia,36KJQ@31979|Clostridiaceae 186801|Clostridia G HPr family ptsH - - ko:K11189 - - - - ko00000,ko02000 4.A.2.1 - - PTS-HPr HNDODLHM_01431 1384065.JAGS01000001_gene468 1.29e-266 752.0 COG1299@1|root,COG1445@1|root,COG1762@1|root,COG1299@2|Bacteria,COG1445@2|Bacteria,COG1762@2|Bacteria,1TPKU@1239|Firmicutes,248V6@186801|Clostridia,3WHCI@541000|Ruminococcaceae 186801|Clostridia G PTS system fruA - 2.7.1.202 ko:K02768,ko:K02769,ko:K02770 ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060 M00273 R03232 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.2.1 - - PTS_EIIA_2,PTS_EIIC,PTS_IIB HNDODLHM_01432 1280685.AUKC01000005_gene2039 2.44e-125 367.0 COG1105@1|root,COG1105@2|Bacteria,1TQ36@1239|Firmicutes,249RK@186801|Clostridia,4BW6I@830|Butyrivibrio 186801|Clostridia G Phosphomethylpyrimidine kinase pfkB - 2.7.1.56 ko:K00882 ko00051,map00051 - R02071 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PfkB HNDODLHM_01433 1280680.AUJU01000026_gene2862 1.8e-88 270.0 COG1349@1|root,COG1349@2|Bacteria,1TSF8@1239|Firmicutes,2498W@186801|Clostridia,4BWMS@830|Butyrivibrio 186801|Clostridia GK DeoR C terminal sensor domain fruR - - ko:K03436 - - - - ko00000,ko03000 - - - DeoRC,HTH_DeoR HNDODLHM_01434 1410617.JHXH01000009_gene1645 9.28e-44 152.0 COG0664@1|root,COG0664@2|Bacteria,1V8K7@1239|Firmicutes,24JZ5@186801|Clostridia,3WPPC@541000|Ruminococcaceae 186801|Clostridia K COG COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - - - - - - - - - - HTH_Crp_2,cNMP_binding HNDODLHM_01435 476272.RUMHYD_00816 7.78e-20 100.0 COG1196@1|root,COG5492@1|root,COG1196@2|Bacteria,COG5492@2|Bacteria,1U4RJ@1239|Firmicutes,25K63@186801|Clostridia,3Y24N@572511|Blautia 186801|Clostridia N Fibronectin type III domain - - - - - - - - - - - - fn3 HNDODLHM_01436 1384065.JAGS01000001_gene1007 3.61e-95 287.0 COG1351@1|root,COG1351@2|Bacteria,1TRAA@1239|Firmicutes,249DJ@186801|Clostridia,3WGNR@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant thyX - 2.1.1.148 ko:K03465 ko00240,ko00670,ko01100,map00240,map00670,map01100 - R06613 RC00022,RC00332 ko00000,ko00001,ko01000 - - - Thy1 HNDODLHM_01437 1105031.HMPREF1141_2215 6.87e-85 258.0 COG0125@1|root,COG0125@2|Bacteria,1V2D5@1239|Firmicutes,259SU@186801|Clostridia,36F78@31979|Clostridiaceae 186801|Clostridia F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis tmk - 2.7.4.9 ko:K00943 ko00240,ko01100,map00240,map01100 M00053 R02094,R02098 RC00002 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS00680 Thymidylate_kin HNDODLHM_01438 1125701.HMPREF1221_00114 5.75e-62 205.0 COG4866@1|root,COG4866@2|Bacteria,2J5HZ@203691|Spirochaetes 203691|Spirochaetes S conserved protein (DUF2156) - - - ko:K01163 - - - - ko00000 - - - DUF2156 HNDODLHM_01439 762968.HMPREF9441_00004 1.98e-06 57.0 COG4552@1|root,COG4866@1|root,COG4552@2|Bacteria,COG4866@2|Bacteria,4NGJE@976|Bacteroidetes,2FNB2@200643|Bacteroidia 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 - - - ko:K01163 - - - - ko00000 - - - Acetyltransf_9,DUF2156 HNDODLHM_01440 1410617.JHXH01000001_gene936 1.54e-66 208.0 COG0693@1|root,COG0693@2|Bacteria,1V3WB@1239|Firmicutes,24HGU@186801|Clostridia,3WJ0K@541000|Ruminococcaceae 186801|Clostridia S DJ-1 family yajL - 3.5.1.124 ko:K03152 - - - - ko00000,ko01000,ko01002 - - - DJ-1_PfpI HNDODLHM_01441 1120746.CCNL01000010_gene1426 3.05e-63 201.0 COG0212@1|root,COG0212@2|Bacteria,2NRKD@2323|unclassified Bacteria 2|Bacteria H 5-formyltetrahydrofolate cyclo-ligase family ygfA GO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019752,GO:0022611,GO:0030272,GO:0032502,GO:0034641,GO:0035999,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.2 ko:K01934 ko00670,ko01100,map00670,map01100 - R02301 RC00183 ko00000,ko00001,ko01000 - - iECABU_c1320.ECABU_c31940,iECOK1_1307.ECOK1_3298,iECSF_1327.ECSF_2705,iUTI89_1310.UTI89_C3298 5-FTHF_cyc-lig HNDODLHM_01442 1105031.HMPREF1141_2220 1.18e-105 327.0 COG1559@1|root,COG1559@2|Bacteria,1TS48@1239|Firmicutes,2493B@186801|Clostridia,36FDF@31979|Clostridiaceae 186801|Clostridia S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation mltG - - ko:K07082 - - - - ko00000 - - - YceG HNDODLHM_01443 428125.CLOLEP_01888 1.76e-178 510.0 COG0826@1|root,COG0826@2|Bacteria,1TPRE@1239|Firmicutes,248I3@186801|Clostridia,3WGFB@541000|Ruminococcaceae 186801|Clostridia O Peptidase U32 yhbU_1 - - ko:K08303 ko05120,map05120 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_U32,Peptidase_U32_C HNDODLHM_01444 428125.CLOLEP_01892 0.0 1157.0 COG0013@1|root,COG0013@2|Bacteria,1TPK6@1239|Firmicutes,248M3@186801|Clostridia,3WGEX@541000|Ruminococcaceae 186801|Clostridia J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS - 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD HNDODLHM_01447 445973.CLOBAR_01153 3.91e-138 397.0 COG0648@1|root,COG0648@2|Bacteria,1TP1D@1239|Firmicutes,2499E@186801|Clostridia,25SGH@186804|Peptostreptococcaceae 186801|Clostridia L Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin nfo - 3.1.21.2 ko:K01151 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - AP_endonuc_2 HNDODLHM_01448 754476.Q7A_2921 1.01e-26 102.0 COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,1S5WR@1236|Gammaproteobacteria,460QC@72273|Thiotrichales 72273|Thiotrichales O Belongs to the thioredoxin family - - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin HNDODLHM_01449 641107.CDLVIII_3733 2.91e-89 275.0 COG0492@1|root,COG0492@2|Bacteria,1TNZS@1239|Firmicutes,2491M@186801|Clostridia,36E0J@31979|Clostridiaceae 186801|Clostridia C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family trxB - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2 HNDODLHM_01450 632245.CLP_3688 5.62e-79 249.0 COG0697@1|root,COG0697@2|Bacteria,1TRH8@1239|Firmicutes,24B85@186801|Clostridia,36DNS@31979|Clostridiaceae 186801|Clostridia EG EamA-like transporter family - - - - - - - - - - - - EamA HNDODLHM_01451 1410617.JHXH01000007_gene1513 1.17e-72 226.0 COG0637@1|root,COG0637@2|Bacteria,1VA5Z@1239|Firmicutes,24JNY@186801|Clostridia,3WI50@541000|Ruminococcaceae 186801|Clostridia S IA, variant 3 - - - - - - - - - - - - HAD_2,Mannitol_dh_C HNDODLHM_01452 1298920.KI911353_gene4569 3e-207 588.0 COG1115@1|root,COG1115@2|Bacteria,1TNZP@1239|Firmicutes,247S6@186801|Clostridia,21YBJ@1506553|Lachnoclostridium 186801|Clostridia E amino acid carrier protein - - - ko:K03310 - - - - ko00000 2.A.25 - - Na_Ala_symp HNDODLHM_01453 411468.CLOSCI_01782 1.23e-101 298.0 COG1896@1|root,COG1896@2|Bacteria,1V3MK@1239|Firmicutes,24IBW@186801|Clostridia,21ZZT@1506553|Lachnoclostridium 186801|Clostridia S HD domain - - - ko:K07023 - - - - ko00000 - - - HD_3 HNDODLHM_01454 511680.BUTYVIB_01629 0.0 910.0 COG0129@1|root,COG0129@2|Bacteria,1TP1R@1239|Firmicutes,247UC@186801|Clostridia,4BWZ5@830|Butyrivibrio 186801|Clostridia EG Dehydratase family ilvD - 4.2.1.9 ko:K01687 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R04441,R05070 RC00468,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD HNDODLHM_01455 428125.CLOLEP_01614 0.0 1045.0 COG0480@1|root,COG0480@2|Bacteria,1TPWN@1239|Firmicutes,247N4@186801|Clostridia,3WGA7@541000|Ruminococcaceae 186801|Clostridia J translation elongation fusA2 - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 HNDODLHM_01456 411489.CLOL250_00996 2.91e-133 386.0 COG1284@1|root,COG1284@2|Bacteria,1TQTP@1239|Firmicutes,25CBN@186801|Clostridia,36WSY@31979|Clostridiaceae 186801|Clostridia S Uncharacterized protein conserved in bacteria (DUF2179) - - - - - - - - - - - - DUF2179,YitT_membrane HNDODLHM_01457 445972.ANACOL_01687 1.01e-144 423.0 COG0053@1|root,COG0053@2|Bacteria,1TSGY@1239|Firmicutes,2491V@186801|Clostridia,3WGK3@541000|Ruminococcaceae 186801|Clostridia P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - - - - - - - - - - Cation_efflux,ZT_dimer HNDODLHM_01458 428125.CLOLEP_00391 5.6e-238 675.0 COG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,247Q0@186801|Clostridia,3WGVP@541000|Ruminococcaceae 186801|Clostridia V ABC-type multidrug transport system ATPase and permease - - - ko:K06147,ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran HNDODLHM_01459 428125.CLOLEP_00392 3.86e-242 685.0 COG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,247T8@186801|Clostridia,3WGTD@541000|Ruminococcaceae 186801|Clostridia V ABC transporter - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran HNDODLHM_01460 428125.CLOLEP_01129 9.48e-290 800.0 COG0696@1|root,COG0696@2|Bacteria,1TPM4@1239|Firmicutes,247JG@186801|Clostridia,3WGBI@541000|Ruminococcaceae 186801|Clostridia G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gpmI - 5.4.2.12 ko:K15633 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000 - - - Metalloenzyme,Phosphodiest,iPGM_N HNDODLHM_01461 697329.Rumal_0090 1.79e-133 384.0 COG0149@1|root,COG0149@2|Bacteria,1TP2F@1239|Firmicutes,248JN@186801|Clostridia,3WGWY@541000|Ruminococcaceae 186801|Clostridia G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA - 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - iHN637.CLJU_RS19265 TIM HNDODLHM_01462 1160721.RBI_II00637 4.38e-245 678.0 COG0126@1|root,COG0126@2|Bacteria,1TP3H@1239|Firmicutes,248VS@186801|Clostridia,3WGM9@541000|Ruminococcaceae 186801|Clostridia G Phosphoglycerate kinase pgk - 2.7.2.3,5.3.1.1 ko:K00927,ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01015,R01512 RC00002,RC00043,RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGK HNDODLHM_01463 428125.CLOLEP_01125 2.57e-93 275.0 COG0219@1|root,COG0219@2|Bacteria,1V3GW@1239|Firmicutes,24HVV@186801|Clostridia,3WIDH@541000|Ruminococcaceae 186801|Clostridia J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily trmL - 2.1.1.207 ko:K03216 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase HNDODLHM_01465 1120746.CCNL01000011_gene1617 9.17e-38 154.0 COG0739@1|root,COG0739@2|Bacteria 2|Bacteria M heme binding - - - - - - - - - - - - G5,LysM,Peptidase_M23 HNDODLHM_01466 1105031.HMPREF1141_3092 2.08e-67 208.0 COG1854@1|root,COG1854@2|Bacteria,1V1CH@1239|Firmicutes,24G3R@186801|Clostridia,36I3G@31979|Clostridiaceae 186801|Clostridia H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) luxS - 4.4.1.21 ko:K07173 ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111 M00609 R01291 RC00069,RC01929 ko00000,ko00001,ko00002,ko01000 - - - LuxS HNDODLHM_01467 1384066.JAGT01000001_gene1424 2.06e-77 246.0 COG3757@1|root,COG3757@2|Bacteria,1V5MP@1239|Firmicutes,24HFV@186801|Clostridia,3WS76@541000|Ruminococcaceae 186801|Clostridia M Glycosyl hydrolases family 25 - - - - - - - - - - - - Glyco_hydro_25 HNDODLHM_01469 332101.JIBU02000018_gene2276 5.14e-34 141.0 COG1376@1|root,COG1376@2|Bacteria,1TQMA@1239|Firmicutes,248H0@186801|Clostridia,36DSK@31979|Clostridiaceae 186801|Clostridia S PFAM ErfK YbiS YcfS YnhG family protein - - - - - - - - - - - - PG_binding_4,YkuD HNDODLHM_01471 138119.DSY0630 3.24e-08 53.9 COG1476@1|root,COG1476@2|Bacteria,1VEIS@1239|Firmicutes,24R6J@186801|Clostridia,265V1@186807|Peptococcaceae 186801|Clostridia K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_19,HTH_3 HNDODLHM_01472 1105031.HMPREF1141_1498 1.58e-76 231.0 COG1327@1|root,COG1327@2|Bacteria,1V3JA@1239|Firmicutes,24HFT@186801|Clostridia,36HY1@31979|Clostridiaceae 186801|Clostridia K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes nrdR - - ko:K07738 - - - - ko00000,ko03000 - - - ATP-cone HNDODLHM_01473 1105031.HMPREF1141_0730 1.22e-129 389.0 COG1686@1|root,COG1686@2|Bacteria,1TQ8M@1239|Firmicutes,2480S@186801|Clostridia,36EWK@31979|Clostridiaceae 186801|Clostridia M Belongs to the peptidase S11 family dacF1 - 3.4.16.4 ko:K01286,ko:K07258 ko00550,ko01100,map00550,map01100 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - PBP5_C,Peptidase_S11 HNDODLHM_01474 428125.CLOLEP_03962 1.51e-244 699.0 COG1200@1|root,COG1200@2|Bacteria,1TQ6I@1239|Firmicutes,247T0@186801|Clostridia,3WG7A@541000|Ruminococcaceae 186801|Clostridia L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) recG - 3.6.4.12 ko:K03655 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,RecG_wedge HNDODLHM_01475 428125.CLOLEP_03963 3.71e-231 655.0 COG1461@1|root,COG1461@2|Bacteria,1TQMX@1239|Firmicutes,247XI@186801|Clostridia,3WH9C@541000|Ruminococcaceae 186801|Clostridia S DAK2 domain fusion protein YloV - - - ko:K07030 - - - - ko00000 - - - Dak1_2,Dak2 HNDODLHM_01476 428125.CLOLEP_03966 3.24e-116 340.0 COG1692@1|root,COG1692@2|Bacteria,1TR9P@1239|Firmicutes,24967@186801|Clostridia,3WHB0@541000|Ruminococcaceae 186801|Clostridia S metallophosphoesterase - - - ko:K09769 - - - - ko00000 - - - YmdB HNDODLHM_01477 1348908.KI518588_gene2156 1.81e-21 103.0 COG0561@1|root,COG0561@2|Bacteria,1TR3N@1239|Firmicutes,4HC8P@91061|Bacilli,1ZBP7@1386|Bacillus 91061|Bacilli S Stage IV sporulation yqfD - - ko:K06438 - - - - ko00000 - - - YqfD HNDODLHM_01479 693746.OBV_35770 2.72e-24 108.0 COG3314@1|root,COG3314@2|Bacteria,1TR0V@1239|Firmicutes,247XA@186801|Clostridia,2N6DP@216572|Oscillospiraceae 186801|Clostridia S Sporulation integral membrane protein YlbJ ylbJ - - - - - - - - - - - Gate HNDODLHM_01480 1499683.CCFF01000017_gene1801 3.45e-266 749.0 COG0367@1|root,COG0367@2|Bacteria,1TRPB@1239|Firmicutes,247YA@186801|Clostridia,36ERR@31979|Clostridiaceae 186801|Clostridia E asparagine synthase asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 HNDODLHM_01481 515620.EUBELI_01018 1.79e-19 85.9 COG0671@1|root,COG0671@2|Bacteria,1VB2R@1239|Firmicutes,24MQ9@186801|Clostridia,25X1V@186806|Eubacteriaceae 186801|Clostridia I Psort location CytoplasmicMembrane, score - - - - - - - - - - - - PAP2 HNDODLHM_01482 428125.CLOLEP_01583 7.66e-54 173.0 COG1970@1|root,COG1970@2|Bacteria,1VA14@1239|Firmicutes,24JAB@186801|Clostridia,3WISA@541000|Ruminococcaceae 186801|Clostridia M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell mscL - - ko:K03282 - - - - ko00000,ko02000 1.A.22.1 - - MscL HNDODLHM_01483 411459.RUMOBE_01174 1.01e-229 640.0 COG0162@1|root,COG0162@2|Bacteria,1TPGN@1239|Firmicutes,247QC@186801|Clostridia,3XYHR@572511|Blautia 186801|Clostridia J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) tyrS - 6.1.1.1 ko:K01866 ko00970,map00970 M00359,M00360 R02918 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - S4,tRNA-synt_1b HNDODLHM_01484 1262449.CP6013_4051 8.74e-45 160.0 COG2333@1|root,COG2333@2|Bacteria,1TS9U@1239|Firmicutes,249VR@186801|Clostridia,36DFY@31979|Clostridiaceae 186801|Clostridia L domain protein - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Ada_Zn_binding,Lactamase_B HNDODLHM_01485 428125.CLOLEP_02954 2.78e-310 862.0 COG1032@1|root,COG1032@2|Bacteria,1TQ8X@1239|Firmicutes,248IW@186801|Clostridia,3WGM7@541000|Ruminococcaceae 186801|Clostridia C UPF0313 protein - - - - - - - - - - - - DUF3362,Radical_SAM,Radical_SAM_N HNDODLHM_01486 428125.CLOLEP_02952 2.78e-223 662.0 COG1674@1|root,COG1674@2|Bacteria,1TPJR@1239|Firmicutes,247KM@186801|Clostridia,3WGRB@541000|Ruminococcaceae 186801|Clostridia D Belongs to the FtsK SpoIIIE SftA family spoIIIE - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma HNDODLHM_01487 1105031.HMPREF1141_2936 8.42e-92 282.0 COG1968@1|root,COG1968@2|Bacteria,1TPFA@1239|Firmicutes,249KK@186801|Clostridia,36EFN@31979|Clostridiaceae 186801|Clostridia V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA HNDODLHM_01488 428125.CLOLEP_02951 1.68e-107 320.0 COG0740@1|root,COG0740@2|Bacteria,1TPX2@1239|Firmicutes,249QX@186801|Clostridia,3WGED@541000|Ruminococcaceae 186801|Clostridia OU Psort location Cytoplasmic, score tepA - 3.4.21.92 ko:K01358 ko04112,ko04212,map04112,map04212 - - - ko00000,ko00001,ko01000,ko01002 - - - CLP_protease HNDODLHM_01489 428125.CLOLEP_02644 1.02e-124 375.0 COG1253@1|root,COG1253@2|Bacteria,1TPN0@1239|Firmicutes,2489N@186801|Clostridia,3WGDS@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - CBS,CorC_HlyC,DUF21 HNDODLHM_01490 357809.Cphy_3715 2.1e-21 90.5 COG4905@1|root,COG4905@2|Bacteria,1VA0H@1239|Firmicutes,24NAK@186801|Clostridia,2210T@1506553|Lachnoclostridium 186801|Clostridia S Psort location CytoplasmicMembrane, score 9.26 - - - - - - - - - - - - ABC_trans_CmpB HNDODLHM_01491 663278.Ethha_2087 1.69e-62 199.0 COG1658@1|root,COG1658@2|Bacteria,1V3K3@1239|Firmicutes,24I8W@186801|Clostridia,3WIWX@541000|Ruminococcaceae 186801|Clostridia L Ribonuclease M5 rnmV - 3.1.26.8 ko:K05985 - - - - ko00000,ko01000 - - - DUF4093,Toprim,Toprim_4 HNDODLHM_01492 1262449.CP6013_2186 5.13e-28 119.0 COG1466@1|root,COG1466@2|Bacteria,1TRM0@1239|Firmicutes,24ASN@186801|Clostridia,36FMH@31979|Clostridiaceae 186801|Clostridia L DNA polymerase III delta subunit holA - 2.7.7.7 ko:K02340 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta HNDODLHM_01493 428125.CLOLEP_01896 1.55e-55 211.0 COG0658@1|root,COG0658@2|Bacteria,1VGSX@1239|Firmicutes,249H4@186801|Clostridia,3WKE7@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Competence HNDODLHM_01494 410358.Mlab_1452 1.07e-22 100.0 COG2172@1|root,arCOG06892@2157|Archaea 2157|Archaea T PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like - - - - - - - - - - - - HATPase_c_2 HNDODLHM_01495 1408324.JNJK01000004_gene2756 2.99e-22 90.1 COG1366@1|root,COG1366@2|Bacteria,1VB77@1239|Firmicutes,24NE7@186801|Clostridia,27NXD@186928|unclassified Lachnospiraceae 186801|Clostridia T STAS domain - - - - - - - - - - - - STAS,STAS_2 HNDODLHM_01496 386456.JQKN01000009_gene1214 9.06e-103 329.0 COG0534@1|root,COG2172@1|root,arCOG01732@2157|Archaea,arCOG06892@2157|Archaea,2XVF5@28890|Euryarchaeota,23PHB@183925|Methanobacteria 183925|Methanobacteria V MatE - - - - - - - - - - - - MatE HNDODLHM_01497 97139.C824_00379 0.0 2179.0 COG1020@1|root,COG3320@1|root,COG1020@2|Bacteria,COG3320@2|Bacteria,1TPTH@1239|Firmicutes,2490U@186801|Clostridia,36EG3@31979|Clostridiaceae 186801|Clostridia Q TIGRFAM amino acid adenylation domain - - 6.1.1.13 ko:K03367 ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150 M00725 R02718 RC00037,RC00094 ko00000,ko00001,ko00002,ko01000,ko01504 - - - AMP-binding,AMP-binding_C,Condensation,NAD_binding_4,PP-binding HNDODLHM_01498 1002809.SSIL_3198 1.57e-10 63.9 COG4767@1|root,COG4767@2|Bacteria,1VAH6@1239|Firmicutes,4HN8M@91061|Bacilli,26FXF@186818|Planococcaceae 91061|Bacilli V VanZ like family - - - - - - - - - - - - VanZ HNDODLHM_01499 1384065.JAGS01000001_gene2376 4.66e-50 170.0 COG3279@1|root,COG3279@2|Bacteria,1TSDB@1239|Firmicutes,24MQ4@186801|Clostridia,3WKJJ@541000|Ruminococcaceae 186801|Clostridia K LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg HNDODLHM_01500 272563.CD630_05760 5.11e-10 69.7 COG0642@1|root,COG0642@2|Bacteria,1V7G1@1239|Firmicutes,25ER0@186801|Clostridia 186801|Clostridia T GHKL domain - - - - - - - - - - - - HATPase_c_5 HNDODLHM_01501 1256908.HMPREF0373_01622 8.22e-81 244.0 COG0350@1|root,COG0350@2|Bacteria,1V2MB@1239|Firmicutes,24HJ0@186801|Clostridia,25W3N@186806|Eubacteriaceae 186801|Clostridia H Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated - - 2.1.1.63 ko:K00567 - - - - ko00000,ko01000,ko03400 - - - DNA_binding_1,Methyltransf_1N HNDODLHM_01503 1188235.MBVG_3880 4.31e-23 89.7 COG2314@1|root,COG2314@2|Bacteria,3WU5Y@544448|Tenericutes 544448|Tenericutes S TM2 domain - - - - - - - - - - - - TM2 HNDODLHM_01504 411473.RUMCAL_01843 5.22e-305 843.0 COG2895@1|root,COG2895@2|Bacteria,1UI8R@1239|Firmicutes,249BX@186801|Clostridia,3WSPE@541000|Ruminococcaceae 186801|Clostridia H Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily cysN - 2.7.1.25,2.7.7.4 ko:K00955,ko:K00956 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00509,R00529,R04928,R04929 RC00002,RC00078,RC02809,RC02889 ko00000,ko00001,ko00002,ko01000 - - - APS_kinase,GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 HNDODLHM_01505 411473.RUMCAL_01842 4.87e-205 568.0 COG0175@1|root,COG0175@2|Bacteria,1U1VN@1239|Firmicutes,248Y9@186801|Clostridia,3WJJK@541000|Ruminococcaceae 186801|Clostridia EH PFAM Phosphoadenosine phosphosulfate reductase cysD - 1.8.4.10,1.8.4.8,2.7.7.4 ko:K00390,ko:K00957 ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130 M00176,M00596 R00529,R02021,R04929 RC00007,RC02809,RC02862,RC02889 ko00000,ko00001,ko00002,ko01000 - - - PAPS_reduct HNDODLHM_01506 59374.Fisuc_0145 1.94e-52 166.0 COG1146@1|root,COG1146@2|Bacteria 2|Bacteria C 4 iron, 4 sulfur cluster binding - - 1.8.99.2 ko:K00395 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00596 R00860,R04927,R08553 RC00007,RC01239,RC02862 ko00000,ko00001,ko00002,ko01000 - - - Fer4,Fer4_10,Fer4_4,Fer4_9 HNDODLHM_01507 411473.RUMCAL_01840 1.51e-312 862.0 COG1053@1|root,COG1053@2|Bacteria,1TRE8@1239|Firmicutes,247TH@186801|Clostridia,3WNS7@541000|Ruminococcaceae 186801|Clostridia C Fumarate reductase flavoprotein C-term aprA - 1.8.99.2 ko:K00394 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00596 R00860,R04927,R08553 RC00007,RC01239,RC02862 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C HNDODLHM_01508 411473.RUMCAL_01839 7.78e-110 327.0 COG0492@1|root,COG0492@2|Bacteria,1TNZS@1239|Firmicutes,2491M@186801|Clostridia,3WHUP@541000|Ruminococcaceae 186801|Clostridia C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family trxB - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Thioredoxin HNDODLHM_01509 411473.RUMCAL_01838 1.23e-77 233.0 COG1310@1|root,COG1310@2|Bacteria,1V6TY@1239|Firmicutes,24JI8@186801|Clostridia,3WJ1M@541000|Ruminococcaceae 186801|Clostridia S Mov34 MPN PAD-1 family - - 3.13.1.6 ko:K21140 ko04122,map04122 - R11524 RC00064,RC00090 ko00000,ko00001,ko01000 - - - Prok-JAB HNDODLHM_01510 1160721.RBI_I01805 3.34e-177 495.0 COG0476@1|root,COG0476@2|Bacteria,1TQ3U@1239|Firmicutes,25CJC@186801|Clostridia,3WGRI@541000|Ruminococcaceae 186801|Clostridia H PFAM UBA THIF-type NAD FAD binding protein - - 2.7.7.80 ko:K21029 ko04122,map04122 - R07459 RC00043 ko00000,ko00001,ko01000 - - - Rhodanese,ThiF HNDODLHM_01511 1160721.RBI_I01806 4.36e-35 120.0 COG2104@1|root,COG2104@2|Bacteria,1VFJR@1239|Firmicutes,24SEU@186801|Clostridia,3WKGM@541000|Ruminococcaceae 186801|Clostridia H TIGRFAM thiamine biosynthesis protein ThiS thiS - - ko:K03154 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS HNDODLHM_01512 411473.RUMCAL_01835 2.47e-40 136.0 COG0526@1|root,COG0526@2|Bacteria,1UG1U@1239|Firmicutes,24SF7@186801|Clostridia,3WKHR@541000|Ruminococcaceae 186801|Clostridia O Thioredoxin-like domain - - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin HNDODLHM_01513 1160721.RBI_I01808 4.73e-47 151.0 COG0425@1|root,COG0425@2|Bacteria,1VBET@1239|Firmicutes,24NV0@186801|Clostridia,3WJTK@541000|Ruminococcaceae 186801|Clostridia O Belongs to the sulfur carrier protein TusA family - - - - - - - - - - - - TusA HNDODLHM_01514 1160721.RBI_I01809 4.39e-172 484.0 COG2221@1|root,COG2221@2|Bacteria,1TR7P@1239|Firmicutes,2493K@186801|Clostridia,3WHZF@541000|Ruminococcaceae 186801|Clostridia C PFAM nitrite and sulphite reductase 4Fe-4S - - - - - - - - - - - - Fer4,NIR_SIR,NIR_SIR_ferr HNDODLHM_01515 1160721.RBI_I01810 3.32e-225 629.0 COG2873@1|root,COG2873@2|Bacteria,1TXZ1@1239|Firmicutes,248M7@186801|Clostridia,3WH3A@541000|Ruminococcaceae 186801|Clostridia E Cys/Met metabolism PLP-dependent enzyme - - 2.5.1.49 ko:K01740 ko00270,ko01100,map00270,map01100 - R01287,R04859 RC00020,RC02821,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP HNDODLHM_01516 1384065.JAGS01000001_gene1529 6.35e-36 128.0 COG1959@1|root,COG1959@2|Bacteria,1V6RP@1239|Firmicutes,24KGB@186801|Clostridia,3WKDJ@541000|Ruminococcaceae 186801|Clostridia K transcriptional regulator, Rrf2 family - - - - - - - - - - - - Rrf2 HNDODLHM_01517 1160721.RBI_I00187 1.41e-216 607.0 COG0001@1|root,COG0001@2|Bacteria,1TPNH@1239|Firmicutes,248II@186801|Clostridia,3WGHS@541000|Ruminococcaceae 186801|Clostridia H PFAM Aminotransferase class-III hemL - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 HNDODLHM_01518 1160721.RBI_I00188 7.2e-170 481.0 COG0113@1|root,COG0113@2|Bacteria,1TP09@1239|Firmicutes,2496V@186801|Clostridia,3WGUW@541000|Ruminococcaceae 186801|Clostridia H Belongs to the ALAD family hemB - 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - iHN637.CLJU_RS15750 ALAD HNDODLHM_01519 1160721.RBI_I00189 1.31e-156 461.0 COG0007@1|root,COG0007@2|Bacteria,1TQNH@1239|Firmicutes,2487I@186801|Clostridia,3WHWX@541000|Ruminococcaceae 186801|Clostridia H Belongs to the precorrin methyltransferase family cobA - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 ko:K02302,ko:K02303,ko:K13542 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02864,R03165,R03194,R03947 RC00003,RC00871,RC01012,RC01034,RC01861 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS15755 HEM4,Porphobil_deam,Porphobil_deamC,TP_methylase HNDODLHM_01520 1160721.RBI_I00190 6.87e-88 270.0 COG0181@1|root,COG0181@2|Bacteria,1TPFQ@1239|Firmicutes,2494Z@186801|Clostridia,3WG89@541000|Ruminococcaceae 186801|Clostridia H Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps hemC - 2.5.1.61 ko:K01749 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00084 RC02317 ko00000,ko00001,ko00002,ko01000 - - - Porphobil_deam,Porphobil_deamC HNDODLHM_01521 1160721.RBI_I00191 7.37e-44 152.0 COG1648@1|root,COG1648@2|Bacteria,1VA2E@1239|Firmicutes,24N6M@186801|Clostridia,3WKZJ@541000|Ruminococcaceae 186801|Clostridia H Putative NAD(P)-binding cysG - 1.3.1.76,4.99.1.4 ko:K02304 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02864,R03947 RC01012,RC01034 ko00000,ko00001,ko00002,ko01000 - - - CysG_dimeriser,NAD_binding_7,Sirohm_synth_M HNDODLHM_01522 610130.Closa_3083 7.85e-102 313.0 COG0373@1|root,COG0373@2|Bacteria,1TQN9@1239|Firmicutes,2496M@186801|Clostridia,220JE@1506553|Lachnoclostridium 186801|Clostridia H Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) hemA - 1.2.1.70 ko:K02492 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R04109 RC00055,RC00149 ko00000,ko00001,ko00002,ko01000 - - - GlutR_N,GlutR_dimer,Shikimate_DH HNDODLHM_01523 1392491.JIAE01000001_gene1839 2.09e-139 398.0 COG1179@1|root,COG1179@2|Bacteria,1TQ7A@1239|Firmicutes,248RA@186801|Clostridia,3WG8S@541000|Ruminococcaceae 186801|Clostridia H Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 thiF - - ko:K22132 - - - - ko00000,ko03016 - - - ThiF HNDODLHM_01524 411473.RUMCAL_00436 1.94e-180 510.0 COG3842@1|root,COG3842@2|Bacteria,1TP2M@1239|Firmicutes,247JR@186801|Clostridia,3WSP6@541000|Ruminococcaceae 186801|Clostridia E ATPases associated with a variety of cellular activities cysA - 3.6.3.25 ko:K02045,ko:K02052 ko00920,ko02010,ko02024,map00920,map02010,map02024 M00185,M00193 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.11,3.A.1.6.1,3.A.1.6.3 - - ABC_tran,TOBE_2 HNDODLHM_01525 59374.Fisuc_0151 6.11e-147 419.0 COG4208@1|root,COG4208@2|Bacteria 2|Bacteria P ATPase-coupled sulfate transmembrane transporter activity cysW - - ko:K02047 ko00920,ko02010,map00920,map02010 M00185 - - ko00000,ko00001,ko00002,ko02000 3.A.1.6.1,3.A.1.6.3 - - BPD_transp_1 HNDODLHM_01526 411473.RUMCAL_00438 2.32e-150 428.0 COG0555@1|root,COG0555@2|Bacteria,1TQHR@1239|Firmicutes,24ACM@186801|Clostridia,3WIAX@541000|Ruminococcaceae 186801|Clostridia P Sulfate ABC transporter, permease protein CysT cysT - - ko:K02046,ko:K15496 ko00920,ko02010,map00920,map02010 M00185,M00423 - - ko00000,ko00001,ko00002,ko02000 3.A.1.6.1,3.A.1.6.3,3.A.1.6.5 - - BPD_transp_1 HNDODLHM_01527 411473.RUMCAL_00439 8.68e-190 533.0 COG1613@1|root,COG1613@2|Bacteria,1TS25@1239|Firmicutes,24B9S@186801|Clostridia,3WGXR@541000|Ruminococcaceae 186801|Clostridia P Extracellular solute-binding protein sbp - - ko:K02048 ko00920,ko02010,map00920,map02010 M00185 - - ko00000,ko00001,ko00002,ko02000 3.A.1.6.1,3.A.1.6.3 - - SBP_bac_11 HNDODLHM_01529 1105031.HMPREF1141_3229 8.12e-120 358.0 COG0635@1|root,COG0635@2|Bacteria,1TPES@1239|Firmicutes,247P8@186801|Clostridia,36DU5@31979|Clostridiaceae 186801|Clostridia H Involved in the biosynthesis of porphyrin-containing compound hemN - - - - - - - - - - - HemN_C,Radical_SAM HNDODLHM_01530 1105031.HMPREF1141_1128 6.15e-296 817.0 COG4108@1|root,COG4108@2|Bacteria,1TPYT@1239|Firmicutes,247X3@186801|Clostridia,36DUQ@31979|Clostridiaceae 186801|Clostridia J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP prfC - - ko:K02837 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,RF3_C HNDODLHM_01531 140626.JHWB01000009_gene1099 4.23e-122 371.0 COG1982@1|root,COG1982@2|Bacteria,1TNZ9@1239|Firmicutes,247RA@186801|Clostridia 186801|Clostridia E Orn Lys Arg decarboxylase major speA - 4.1.1.19 ko:K01585 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - OKR_DC_1,OKR_DC_1_C HNDODLHM_01532 657322.FPR_28300 3.53e-15 68.6 2EGRK@1|root,33AHS@2|Bacteria,1VK9R@1239|Firmicutes,24UM0@186801|Clostridia,3WMB3@541000|Ruminococcaceae 186801|Clostridia S RSAM-modified six-cysteine peptide scfA - - - - - - - - - - - SCIFF HNDODLHM_01533 411483.FAEPRAA2165_01520 6.16e-279 769.0 COG0641@1|root,COG0641@2|Bacteria,1TQPS@1239|Firmicutes,248DD@186801|Clostridia,3WGAH@541000|Ruminococcaceae 186801|Clostridia C Radical SAM scfB - - ko:K06871 - - - - ko00000 - - - Fer4_12,Radical_SAM,SPASM HNDODLHM_01534 997884.HMPREF1068_02632 1.32e-115 339.0 COG1234@1|root,COG1234@2|Bacteria,4NH9K@976|Bacteroidetes,2FP6X@200643|Bacteroidia,4AP3W@815|Bacteroidaceae 976|Bacteroidetes S Psort location Cytoplasmic, score 8.96 - - 3.1.26.11 ko:K00784 ko03013,map03013 - - - ko00000,ko00001,ko01000,ko03016 - - - Lactamase_B_2 HNDODLHM_01535 203119.Cthe_1404 1.07e-223 646.0 COG0370@1|root,COG0370@2|Bacteria,1TP7E@1239|Firmicutes,24885@186801|Clostridia,3WH9H@541000|Ruminococcaceae 186801|Clostridia P transporter of a GTP-driven Fe(2 ) uptake system feoB2 - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoB_C,FeoB_N,Gate HNDODLHM_01536 1232446.BAIE02000048_gene178 5.15e-12 62.8 COG1918@1|root,COG1918@2|Bacteria,1VK8Z@1239|Firmicutes 1239|Firmicutes P Fe2 transport system protein A - - - ko:K04758 - - - - ko00000,ko02000 - - - FeoA HNDODLHM_01537 411474.COPEUT_00855 2.58e-104 350.0 COG1657@1|root,COG3209@1|root,COG4733@1|root,COG1657@2|Bacteria,COG3209@2|Bacteria,COG4733@2|Bacteria,1UZVS@1239|Firmicutes,24DV2@186801|Clostridia 186801|Clostridia I Leucine-rich repeat (LRR) protein - - - - - - - - - - - - Big_2,DUF4430,Prenyltrans,SLH,SQHop_cyclase_C HNDODLHM_01538 1121289.JHVL01000037_gene3042 8.79e-77 242.0 COG1657@1|root,COG1657@2|Bacteria,1VBUR@1239|Firmicutes,24F29@186801|Clostridia,36HXY@31979|Clostridiaceae 186801|Clostridia I Domain of unknown function (DUF4430) - - - - - - - - - - - - DUF4430 HNDODLHM_01539 138119.DSY3852 1.17e-107 322.0 COG0619@1|root,COG0619@2|Bacteria,1TSB5@1239|Firmicutes,24AN7@186801|Clostridia,2616E@186807|Peptococcaceae 186801|Clostridia P PFAM Cobalt transport protein - - - ko:K16785 ko02010,map02010 M00582 - - ko00000,ko00001,ko00002,ko02000 3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35 - - CbiQ HNDODLHM_01540 138119.DSY3851 0.0 952.0 COG1129@1|root,COG4720@1|root,COG1129@2|Bacteria,COG4720@2|Bacteria,1TQRP@1239|Firmicutes,24YCF@186801|Clostridia,267B9@186807|Peptococcaceae 186801|Clostridia G AAA domain, putative AbiEii toxin, Type IV TA system - - - ko:K16785,ko:K16786,ko:K16787 ko02010,map02010 M00582 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35 - - ABC_tran,ECF-ribofla_trS,ECF_trnsprt HNDODLHM_01541 411474.COPEUT_02205 1.99e-307 842.0 COG0034@1|root,COG0034@2|Bacteria,1TPH3@1239|Firmicutes,247RF@186801|Clostridia 186801|Clostridia F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine purF_1 - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_7,Pribosyltran HNDODLHM_01542 1203606.HMPREF1526_02111 9.18e-162 458.0 COG0024@1|root,COG0024@2|Bacteria,1TQC1@1239|Firmicutes,248I8@186801|Clostridia,36DNY@31979|Clostridiaceae 186801|Clostridia E Methionine aminopeptidase map - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24,SEC-C HNDODLHM_01543 411463.EUBVEN_01864 2.51e-114 345.0 COG0571@1|root,COG0571@2|Bacteria,1UYIA@1239|Firmicutes,24CBC@186801|Clostridia,25Y4U@186806|Eubacteriaceae 186801|Clostridia K Double-stranded RNA binding motif - - 3.1.26.3 ko:K03685 ko03008,ko05205,map03008,map05205 - - - ko00000,ko00001,ko01000,ko03009,ko03019,ko03036 - - - Ribonucleas_3_3,dsrm HNDODLHM_01544 585394.RHOM_15120 6.44e-19 78.6 2C3TZ@1|root,33DSH@2|Bacteria,1VM6H@1239|Firmicutes,254ZM@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01547 1384065.JAGS01000001_gene3244 3.02e-155 457.0 COG2865@1|root,COG2865@2|Bacteria,1U8FY@1239|Firmicutes,24B8W@186801|Clostridia,3WJKE@541000|Ruminococcaceae 186801|Clostridia K Putative DNA-binding domain - - - - - - - - - - - - AlbA_2,HATPase_c_4,HTH_24 HNDODLHM_01548 500632.CLONEX_00486 8.44e-312 862.0 COG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,247PY@186801|Clostridia 186801|Clostridia V abc transporter atp-binding protein - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran HNDODLHM_01549 411468.CLOSCI_00939 1.99e-265 745.0 COG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,247VZ@186801|Clostridia,21YU8@1506553|Lachnoclostridium 186801|Clostridia V COG COG1132 ABC-type multidrug transport system, ATPase and permease components - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran HNDODLHM_01550 658086.HMPREF0994_00438 1.14e-83 253.0 COG1309@1|root,COG1309@2|Bacteria,1TT2J@1239|Firmicutes,24A5X@186801|Clostridia,27KNC@186928|unclassified Lachnospiraceae 186801|Clostridia K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N HNDODLHM_01551 1690.BPSG_0058 4.24e-56 179.0 COG0454@1|root,COG0454@2|Bacteria,2I2HV@201174|Actinobacteria,4D1HR@85004|Bifidobacteriales 201174|Actinobacteria K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_10 HNDODLHM_01552 428125.CLOLEP_02009 3.01e-38 129.0 COG1396@1|root,COG1396@2|Bacteria,1VJNB@1239|Firmicutes,24TZB@186801|Clostridia 186801|Clostridia K sequence-specific DNA binding - - - - - - - - - - - - HTH_19 HNDODLHM_01553 1120746.CCNL01000007_gene399 7.29e-188 555.0 COG0826@1|root,COG0826@2|Bacteria,2NPQH@2323|unclassified Bacteria 2|Bacteria O Evidence 5 No homology to any previously reported sequences - - - ko:K08303 ko05120,map05120 - - - ko00000,ko00001,ko01000,ko01002 - - - DUF3656,Peptidase_U32 HNDODLHM_01555 428125.CLOLEP_01246 1.95e-223 643.0 COG0366@1|root,COG0366@2|Bacteria,1TNZ0@1239|Firmicutes,247YM@186801|Clostridia,3WGCV@541000|Ruminococcaceae 186801|Clostridia G Alpha amylase, catalytic domain protein apu - 2.4.1.25,3.2.1.133,3.2.1.135,3.2.1.20,3.2.1.54 ko:K00705,ko:K01187,ko:K01208 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R02112,R03122,R05196,R06087,R06088,R11262 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH13,GH31,GH77 - Alpha-amylase,Alpha-amylase_N,Glyco_hydro_77,Malt_amylase_C HNDODLHM_01556 1160721.RBI_I00554 3.9e-223 635.0 COG2197@1|root,COG2197@2|Bacteria,1U63E@1239|Firmicutes,24F84@186801|Clostridia,3WKYE@541000|Ruminococcaceae 186801|Clostridia KT response regulator - - - - - - - - - - - - - HNDODLHM_01557 1160721.RBI_I00553 3.38e-169 507.0 29URU@1|root,30G3W@2|Bacteria,1UF59@1239|Firmicutes,25K62@186801|Clostridia,3WP2M@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01559 428125.CLOLEP_01250 0.0 1072.0 COG0188@1|root,COG0188@2|Bacteria,1TP2Z@1239|Firmicutes,2482G@186801|Clostridia,3WGW0@541000|Ruminococcaceae 186801|Clostridia L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV HNDODLHM_01560 428125.CLOLEP_01251 3.94e-40 138.0 COG0824@1|root,COG0824@2|Bacteria,1VAGM@1239|Firmicutes,24NBX@186801|Clostridia,3WJ96@541000|Ruminococcaceae 186801|Clostridia S acyl-CoA thioester hydrolase FcbC - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 HNDODLHM_01561 428125.CLOLEP_01253 0.0 1001.0 COG0187@1|root,COG0187@2|Bacteria,1TQ0R@1239|Firmicutes,248AV@186801|Clostridia,3WGZ0@541000|Ruminococcaceae 186801|Clostridia L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrB - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim HNDODLHM_01563 428125.CLOLEP_01255 4.52e-31 112.0 2E36Q@1|root,32Y6E@2|Bacteria,1VEZV@1239|Firmicutes,24MQP@186801|Clostridia,3WKJK@541000|Ruminococcaceae 186801|Clostridia S Domain of unknown function (DUF370) - - - - - - - - - - - - DUF370 HNDODLHM_01564 428125.CLOLEP_01256 4.05e-122 363.0 COG1195@1|root,COG1195@2|Bacteria,1TP9U@1239|Firmicutes,247KY@186801|Clostridia,3WHXU@541000|Ruminococcaceae 186801|Clostridia L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP recF - - ko:K03629 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - SMC_N HNDODLHM_01565 1519439.JPJG01000095_gene930 6.04e-25 94.7 COG2501@1|root,COG2501@2|Bacteria,1TU9W@1239|Firmicutes,25NDU@186801|Clostridia,2N7QR@216572|Oscillospiraceae 186801|Clostridia S S4 domain - - - ko:K14761 - - - - ko00000,ko03009 - - - S4_2 HNDODLHM_01566 428125.CLOLEP_01258 7.17e-141 414.0 COG0592@1|root,COG0592@2|Bacteria,1TQ7J@1239|Firmicutes,248EG@186801|Clostridia,3WGZ2@541000|Ruminococcaceae 186801|Clostridia L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria dnaN - 2.7.7.7 ko:K02338 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3 HNDODLHM_01567 428125.CLOLEP_01262 4.13e-199 566.0 COG0593@1|root,COG0593@2|Bacteria,1TPV7@1239|Firmicutes,2490S@186801|Clostridia,3WGJH@541000|Ruminococcaceae 186801|Clostridia L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids dnaA - - ko:K02313 ko02020,ko04112,map02020,map04112 - - - ko00000,ko00001,ko03032,ko03036 - - - Bac_DnaA,Bac_DnaA_C,DnaA_N HNDODLHM_01568 1120746.CCNL01000017_gene3154 5.39e-205 574.0 COG3842@1|root,COG3842@2|Bacteria,2NNU0@2323|unclassified Bacteria 2|Bacteria E ATPases associated with a variety of cellular activities msmX - - ko:K10112 ko02010,map02010 M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1 - - ABC_tran,TOBE,TOBE_2 HNDODLHM_01569 428125.CLOLEP_01618 2.66e-73 230.0 COG1187@1|root,COG1187@2|Bacteria,1TQZ2@1239|Firmicutes,248HC@186801|Clostridia,3WHTI@541000|Ruminococcaceae 186801|Clostridia J Belongs to the pseudouridine synthase RsuA family rsuA - 5.4.99.19 ko:K06183 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 HNDODLHM_01571 411461.DORFOR_01437 6.49e-41 145.0 COG0546@1|root,COG0546@2|Bacteria,1V1FQ@1239|Firmicutes,24G1U@186801|Clostridia,27VI1@189330|Dorea 186801|Clostridia S HAD-hyrolase-like nt5e - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 HNDODLHM_01572 585503.HMPREF7545_0883 2.17e-23 95.1 COG5496@1|root,COG5496@2|Bacteria,1VAZJ@1239|Firmicutes,4H5M5@909932|Negativicutes 909932|Negativicutes S Thioesterase family - - - - - - - - - - - - 4HBT HNDODLHM_01573 1120746.CCNL01000017_gene3230 6.71e-208 581.0 COG0012@1|root,COG0012@2|Bacteria,2NNNF@2323|unclassified Bacteria 2|Bacteria J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner ychF - - ko:K06942 - - - - ko00000,ko03009 - - - MMR_HSR1,YchF-GTPase_C HNDODLHM_01575 1120746.CCNL01000008_gene579 4.7e-158 451.0 COG3958@1|root,COG3958@2|Bacteria,2NQFH@2323|unclassified Bacteria 2|Bacteria G Transketolase, pyrimidine binding domain tklB - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C HNDODLHM_01576 1120746.CCNL01000008_gene578 2.11e-138 397.0 COG3959@1|root,COG3959@2|Bacteria,2NP12@2323|unclassified Bacteria 2|Bacteria G Transketolase, thiamine diphosphate binding domain tktA - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transketolase_N HNDODLHM_01577 428125.CLOLEP_02571 9.21e-84 258.0 COG1521@1|root,COG1521@2|Bacteria,1TR0X@1239|Firmicutes,248PX@186801|Clostridia,3WHZV@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis coaX - 2.7.1.33 ko:K03525 ko00770,ko01100,map00770,map01100 M00120 R02971,R03018,R04391 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Pan_kinase HNDODLHM_01578 622312.ROSEINA2194_00831 6.02e-47 160.0 COG4684@1|root,COG4684@2|Bacteria,1V2ZW@1239|Firmicutes 1239|Firmicutes S ECF transporter, substrate-specific component - - - - - - - - - - - - ECF_trnsprt HNDODLHM_01579 428125.CLOLEP_03916 7.54e-99 302.0 COG0340@1|root,COG0340@2|Bacteria,1TQCU@1239|Firmicutes,248CK@186801|Clostridia,3WHDB@541000|Ruminococcaceae 186801|Clostridia HK Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor birA - 6.3.4.15 ko:K03524 ko00780,ko01100,map00780,map01100 - R01074,R05145 RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko01000,ko03000 - - - BPL_C,BPL_LplA_LipB,HTH_11 HNDODLHM_01580 469606.FSCG_01306 1.21e-61 203.0 COG4185@1|root,COG4185@2|Bacteria,378KI@32066|Fusobacteria 32066|Fusobacteria S Zeta toxin - - 2.7.1.176 ko:K16214 - - - - ko00000,ko01000,ko02048 - - - Zeta_toxin HNDODLHM_01581 1378168.N510_01232 1.8e-288 801.0 COG1961@1|root,COG1961@2|Bacteria,1TWK9@1239|Firmicutes 1239|Firmicutes L Resolvase, N terminal domain - - - - - - - - - - - - Recombinase,Resolvase,Zn_ribbon_recom HNDODLHM_01582 1514668.JOOA01000002_gene1475 1.28e-197 562.0 COG1373@1|root,COG1373@2|Bacteria,1TQ8Z@1239|Firmicutes,24A83@186801|Clostridia,3WI22@541000|Ruminococcaceae 186801|Clostridia S Domain of unknown function (DUF4143) - - - - - - - - - - - - AAA_14,DUF4143 HNDODLHM_01583 537013.CLOSTMETH_01937 3.19e-242 691.0 COG0514@1|root,COG0514@2|Bacteria,1TPN5@1239|Firmicutes,247ZA@186801|Clostridia,3WHAU@541000|Ruminococcaceae 186801|Clostridia L ATP-dependent DNA helicase RecQ recQ - 3.6.4.12 ko:K03654 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind HNDODLHM_01584 1122917.KB899659_gene5296 5.1e-37 128.0 COG1695@1|root,COG1695@2|Bacteria,1VAKA@1239|Firmicutes,4IR4T@91061|Bacilli,276N1@186822|Paenibacillaceae 91061|Bacilli K Transcriptional regulator PadR-like family - - - - - - - - - - - - PadR HNDODLHM_01587 1235835.C814_01774 5.19e-283 795.0 COG3855@1|root,COG3855@2|Bacteria,1TPFU@1239|Firmicutes,248ZC@186801|Clostridia,3WGTB@541000|Ruminococcaceae 186801|Clostridia G D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 fbp - 3.1.3.11 ko:K04041 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200 M00003,M00165,M00167 R00762,R04780 RC00017 ko00000,ko00001,ko00002,ko01000 - - - FBPase_2 HNDODLHM_01588 1226322.HMPREF1545_01173 1.13e-289 810.0 COG0326@1|root,COG0326@2|Bacteria,1TQEU@1239|Firmicutes,247ND@186801|Clostridia,2N70B@216572|Oscillospiraceae 186801|Clostridia O Hsp90 protein htpG - - ko:K04079 ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418 - - - ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147 - - - HATPase_c,HATPase_c_3,HSP90 HNDODLHM_01589 755731.Clo1100_2141 6.35e-154 469.0 COG1368@1|root,COG1368@2|Bacteria,1TRMA@1239|Firmicutes,2480C@186801|Clostridia,36GR9@31979|Clostridiaceae 186801|Clostridia M Sulfatase - - - - - - - - - - - - Sulfatase HNDODLHM_01590 428125.CLOLEP_00039 9.52e-45 165.0 COG5279@1|root,COG5279@2|Bacteria,1V4SN@1239|Firmicutes,24HXN@186801|Clostridia,3WKJI@541000|Ruminococcaceae 186801|Clostridia D Transglutaminase-like superfamily - - - - - - - - - - - - Transglut_core HNDODLHM_01591 428125.CLOLEP_00362 4.99e-92 278.0 COG0543@1|root,COG0543@2|Bacteria,1TQ5D@1239|Firmicutes,24AY2@186801|Clostridia,3WGW1@541000|Ruminococcaceae 186801|Clostridia C Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) pyrK - - ko:K02823 ko00240,ko01100,map00240,map01100 - - - ko00000,ko00001 - - - DHODB_Fe-S_bind,FAD_binding_6,NAD_binding_1 HNDODLHM_01592 428125.CLOLEP_00361 5.64e-174 490.0 COG0167@1|root,COG0167@2|Bacteria,1TPFV@1239|Firmicutes,248CQ@186801|Clostridia,3WGC5@541000|Ruminococcaceae 186801|Clostridia F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily pyrD - 1.3.1.14 ko:K17828 ko00240,ko01100,map00240,map01100 M00051 R01869 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh HNDODLHM_01593 573061.Clocel_2497 3.16e-63 204.0 COG2323@1|root,COG2323@2|Bacteria,1TRWQ@1239|Firmicutes,24CFP@186801|Clostridia,36EE2@31979|Clostridiaceae 186801|Clostridia S membrane - - - - - - - - - - - - DUF421 HNDODLHM_01594 357809.Cphy_3785 9.11e-271 764.0 COG1501@1|root,COG1501@2|Bacteria,1TR8N@1239|Firmicutes,24A10@186801|Clostridia,222FN@1506553|Lachnoclostridium 186801|Clostridia G Galactose mutarotase-like - - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - DUF5110,Gal_mutarotas_2,Glyco_hydro_31 HNDODLHM_01595 1121333.JMLH01000027_gene1155 1.63e-35 131.0 COG1476@1|root,COG1476@2|Bacteria,1VMIP@1239|Firmicutes,3VS6X@526524|Erysipelotrichia 526524|Erysipelotrichia K Cro/C1-type HTH DNA-binding domain - - - - - - - - - - - - HTH_3 HNDODLHM_01596 428125.CLOLEP_02426 1.47e-246 690.0 COG1109@1|root,COG1109@2|Bacteria,1TS6S@1239|Firmicutes,2491F@186801|Clostridia,3WN8S@541000|Ruminococcaceae 186801|Clostridia G Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II - - 5.4.2.2 ko:K01835 ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00549 R00959,R01057,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III HNDODLHM_01597 246199.CUS_7762 0.0 1223.0 COG1327@1|root,COG1328@1|root,COG1327@2|Bacteria,COG1328@2|Bacteria,1TR9K@1239|Firmicutes,247WF@186801|Clostridia,3WHPK@541000|Ruminococcaceae 186801|Clostridia F Ribonucleoside-triphosphate reductase nrdD - 1.1.98.6 ko:K21636 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R11633,R11634,R11635,R11636 RC00613 ko00000,ko00001,ko00002,ko01000 - - - ATP-cone,NRDD HNDODLHM_01598 471875.RUMLAC_00869 2.71e-90 268.0 COG0602@1|root,COG0602@2|Bacteria,1V1HG@1239|Firmicutes,24HIJ@186801|Clostridia,3WIIU@541000|Ruminococcaceae 186801|Clostridia C Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine nrdG - 1.97.1.4 ko:K04068 - - R04710 - ko00000,ko01000 - - - Fer4_12,Radical_SAM HNDODLHM_01599 1280682.AUKA01000010_gene106 7.67e-14 72.8 2EFW8@1|root,339NG@2|Bacteria,1VI6U@1239|Firmicutes,24UK7@186801|Clostridia,4C05M@830|Butyrivibrio 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01601 1410617.JHXH01000001_gene722 8.96e-41 149.0 2EV14@1|root,33NG8@2|Bacteria,1VU24@1239|Firmicutes,24Z1N@186801|Clostridia,3WHPM@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01603 877411.JMMA01000002_gene466 4.58e-28 114.0 COG0681@1|root,COG0681@2|Bacteria,1VH6F@1239|Firmicutes,259NA@186801|Clostridia,3WGDR@541000|Ruminococcaceae 186801|Clostridia U Peptidase S24-like - - 3.4.21.89 ko:K13280 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S24 HNDODLHM_01604 1209989.TepiRe1_2839 9.07e-50 164.0 COG1943@1|root,COG1943@2|Bacteria,1VCIB@1239|Firmicutes,24MZS@186801|Clostridia 186801|Clostridia L Transposase IS200 like - - - - - - - - - - - - Y1_Tnp HNDODLHM_01605 246199.CUS_7883 4.81e-180 523.0 COG1401@1|root,COG1401@2|Bacteria,1TRK1@1239|Firmicutes,24EKG@186801|Clostridia,3WI4A@541000|Ruminococcaceae 186801|Clostridia V ATPase associated with various cellular activities - - - - - - - - - - - - - HNDODLHM_01606 1278311.AUAL01000001_gene160 1.2e-13 83.6 COG0681@1|root,COG0681@2|Bacteria 2|Bacteria U signal peptide processing - - 3.4.21.89 ko:K13280 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - DUF2357,Peptidase_S24 HNDODLHM_01612 1121101.HMPREF1532_01707 9.36e-78 243.0 COG0561@1|root,COG0561@2|Bacteria,4NICE@976|Bacteroidetes,2G396@200643|Bacteroidia,4AWBZ@815|Bacteroidaceae 976|Bacteroidetes S Sucrose-6F-phosphate phosphohydrolase - - - - - - - - - - - - Hydrolase_3 HNDODLHM_01613 1519439.JPJG01000050_gene827 1.47e-46 150.0 COG1278@1|root,COG1278@2|Bacteria,1VBBH@1239|Firmicutes,24QK9@186801|Clostridia,2N7GS@216572|Oscillospiraceae 186801|Clostridia K Probable zinc-ribbon domain - - - - - - - - - - - - zf-trcl HNDODLHM_01614 861450.HMPREF0080_01893 2.29e-25 105.0 COG1595@1|root,COG1595@2|Bacteria,1TP55@1239|Firmicutes,4H2TH@909932|Negativicutes 909932|Negativicutes K Belongs to the sigma-70 factor family sigH - - ko:K03091 - - - - ko00000,ko03021 - - - GerE,Sigma70_r2,Sigma70_r4_2 HNDODLHM_01615 1120746.CCNL01000011_gene1511 3.62e-215 611.0 COG0606@1|root,COG0606@2|Bacteria,2NNW7@2323|unclassified Bacteria 2|Bacteria O Magnesium chelatase, subunit ChlI C-terminal comM - - ko:K06400,ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C HNDODLHM_01616 411467.BACCAP_02043 9.37e-27 99.0 COG1251@1|root,COG1251@2|Bacteria,1W1DD@1239|Firmicutes,25EHF@186801|Clostridia,269MR@186813|unclassified Clostridiales 186801|Clostridia C Domain of unknown function (DUF1858) - - - - - - - - - - - - DUF1858 HNDODLHM_01617 887325.HMPREF0381_1485 7.59e-45 156.0 COG2384@1|root,COG2384@2|Bacteria,1V3I4@1239|Firmicutes,24BJI@186801|Clostridia,1HUFJ@1164882|Lachnoanaerobaculum 186801|Clostridia J tRNA (adenine(22)-N(1))-methyltransferase trmK - 2.1.1.217 ko:K06967 - - - - ko00000,ko01000,ko03016 - - - Methyltransf_18,TrmK HNDODLHM_01618 1105031.HMPREF1141_2697 4.53e-73 230.0 COG0327@1|root,COG0327@2|Bacteria,1TQ27@1239|Firmicutes,248Q2@186801|Clostridia,36E01@31979|Clostridiaceae 186801|Clostridia S dinuclear metal center protein, YbgI - - - - - - - - - - - - NIF3 HNDODLHM_01619 290402.Cbei_0833 4.12e-84 256.0 COG0220@1|root,COG0220@2|Bacteria,1TQCA@1239|Firmicutes,248YR@186801|Clostridia,36DWU@31979|Clostridiaceae 186801|Clostridia J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA trmB - 2.1.1.33 ko:K03439 - - - - ko00000,ko01000,ko03016 - - - Methyltransf_4 HNDODLHM_01620 428125.CLOLEP_01976 3.76e-37 148.0 COG0457@1|root,COG0457@2|Bacteria,1V0WM@1239|Firmicutes,24D57@186801|Clostridia,3WS6H@541000|Ruminococcaceae 186801|Clostridia S Tetratricopeptide repeat - - - - - - - - - - - - VCBS HNDODLHM_01621 428125.CLOLEP_01977 4.45e-139 396.0 COG0745@1|root,COG0745@2|Bacteria,1TPN8@1239|Firmicutes,248UA@186801|Clostridia,3WGQR@541000|Ruminococcaceae 186801|Clostridia K response regulator receiver - - - - - - - - - - - - Response_reg,Trans_reg_C HNDODLHM_01622 1120746.CCNL01000017_gene3068 3.06e-153 452.0 COG5000@1|root,COG5002@1|root,COG5000@2|Bacteria,COG5002@2|Bacteria 2|Bacteria T protein histidine kinase activity yclK - 2.7.13.3 ko:K07636,ko:K07769 ko02020,map02020 M00434,M00466 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA HNDODLHM_01623 1120746.CCNL01000017_gene3067 2.87e-125 368.0 COG3872@1|root,COG3872@2|Bacteria,2NP59@2323|unclassified Bacteria 2|Bacteria S Protein of unknown function (DUF1385) prmC - - - - - - - - - - - DUF1385 HNDODLHM_01624 1120746.CCNL01000017_gene3066 3.91e-70 225.0 COG2890@1|root,COG2890@2|Bacteria,2NPDN@2323|unclassified Bacteria 2|Bacteria J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif prmB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009007,GO:0009008,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0032775,GO:0034641,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044728,GO:0046483,GO:0071704,GO:0090304,GO:0140096,GO:0140097,GO:1901360,GO:1901564 2.1.1.297,2.1.1.298 ko:K02493,ko:K07320 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03009,ko03012 - - - MTS HNDODLHM_01625 428125.CLOLEP_01982 1.15e-196 554.0 COG0468@1|root,COG0468@2|Bacteria,1TPD5@1239|Firmicutes,247SF@186801|Clostridia,3WGST@541000|Ruminococcaceae 186801|Clostridia L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage recA - - ko:K03553 ko03440,map03440 M00729 - - ko00000,ko00001,ko00002,ko03400 - - - RecA HNDODLHM_01626 428125.CLOLEP_01983 9.73e-69 215.0 COG2137@1|root,COG2137@2|Bacteria,1VAFI@1239|Firmicutes,25DPI@186801|Clostridia,3WSGY@541000|Ruminococcaceae 186801|Clostridia S Modulates RecA activity recX - - ko:K03565 - - - - ko00000,ko03400 - - - RecX HNDODLHM_01627 1105031.HMPREF1141_1371 5.2e-199 565.0 COG0621@1|root,COG0621@2|Bacteria,1TP2W@1239|Firmicutes,2487D@186801|Clostridia,36E1K@31979|Clostridiaceae 186801|Clostridia J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 HNDODLHM_01628 1105031.HMPREF1141_1372 5.22e-55 180.0 COG0558@1|root,COG0558@2|Bacteria,1V6PJ@1239|Firmicutes,24J7Y@186801|Clostridia,36FYW@31979|Clostridiaceae 186801|Clostridia I Belongs to the CDP-alcohol phosphatidyltransferase class-I family pgsA - 2.7.8.41,2.7.8.5 ko:K00995,ko:K08744 ko00564,ko01100,map00564,map01100 - R01801,R02030 RC00002,RC00017,RC02795 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf HNDODLHM_01629 428125.CLOLEP_01986 1.59e-96 287.0 COG1045@1|root,COG1045@2|Bacteria,1TR42@1239|Firmicutes,249SF@186801|Clostridia,3WHD9@541000|Ruminococcaceae 186801|Clostridia E serine O-acetyltransferase cysE - 2.3.1.30 ko:K00640 ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111 M00021 R00586 RC00004,RC00041 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,SATase_N HNDODLHM_01630 411467.BACCAP_02437 1.82e-253 705.0 COG0215@1|root,COG0215@2|Bacteria,1TP9D@1239|Firmicutes,247KS@186801|Clostridia,2684B@186813|unclassified Clostridiales 186801|Clostridia J Belongs to the class-I aminoacyl-tRNA synthetase family cysS - 6.1.1.16 ko:K01883 ko00970,map00970 M00359,M00360 R03650 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_2,tRNA-synt_1e,tRNA-synt_1g HNDODLHM_01631 1120746.CCNL01000011_gene1653 6.63e-94 283.0 COG0726@1|root,COG0726@2|Bacteria,2NRM5@2323|unclassified Bacteria 2|Bacteria G Polysaccharide deacetylase pdaB GO:0005575,GO:0005623,GO:0016020,GO:0042763,GO:0044464 3.5.1.104 ko:K22278 - - - - ko00000,ko01000 - - - Polysacc_deac_1 HNDODLHM_01632 1232449.BAHV02000008_gene631 0.00035 44.3 2DQ5Z@1|root,334WJ@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Phage_GP20 HNDODLHM_01633 1235799.C818_04221 1.14e-38 132.0 2E3WI@1|root,32YTQ@2|Bacteria,1VHE5@1239|Firmicutes,25IYB@186801|Clostridia,27SYM@186928|unclassified Lachnospiraceae 186801|Clostridia S YjcQ protein - - - - - - - - - - - - YjcQ HNDODLHM_01634 511680.BUTYVIB_00504 2.19e-53 197.0 2DBJI@1|root,2Z9M2@2|Bacteria,1V4CA@1239|Firmicutes,24IGG@186801|Clostridia,4BYMF@830|Butyrivibrio 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - HisKA_7TM HNDODLHM_01635 1280681.AUJZ01000003_gene1919 2.42e-46 172.0 COG4585@1|root,COG4585@2|Bacteria,1V4GJ@1239|Firmicutes,24M3N@186801|Clostridia,4BYYX@830|Butyrivibrio 186801|Clostridia T Psort location - - - - - - - - - - - - - HNDODLHM_01636 1042156.CXIVA_14890 7.88e-83 252.0 COG2197@1|root,COG2197@2|Bacteria,1TQ1U@1239|Firmicutes,24E7M@186801|Clostridia 186801|Clostridia T Response regulator receiver domain protein - - - ko:K07694 ko02020,map02020 M00480 - - ko00000,ko00001,ko00002,ko02022 - - - GerE,Response_reg HNDODLHM_01639 1384065.JAGS01000001_gene1730 1.8e-45 155.0 2A1UJ@1|root,30Q3Q@2|Bacteria,1V50E@1239|Firmicutes,24ITX@186801|Clostridia,3WJ9S@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01641 548479.HMPREF0573_10770 3.18e-34 137.0 2C1YG@1|root,2ZAA0@2|Bacteria,2GV42@201174|Actinobacteria,4D7DB@85005|Actinomycetales 201174|Actinobacteria S Domain of unknown function (DUF4428) - - - - - - - - - - - - DUF4428 HNDODLHM_01643 457412.RSAG_00912 1.44e-47 155.0 COG4422@1|root,COG4422@2|Bacteria,1TPP1@1239|Firmicutes,248RZ@186801|Clostridia,3WHGZ@541000|Ruminococcaceae 186801|Clostridia S Protein of unknown function (DUF5131) - - - - - - - - - - - - DUF4186,DUF5131 HNDODLHM_01644 1120998.AUFC01000003_gene1438 8.08e-243 689.0 COG0514@1|root,COG0514@2|Bacteria 2|Bacteria L ATP-dependent DNA helicase (RecQ) recQ - 3.6.4.12 ko:K03654 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind HNDODLHM_01645 545695.TREAZ_1436 1.15e-96 300.0 COG0400@1|root,COG0400@2|Bacteria,2J6EZ@203691|Spirochaetes 203691|Spirochaetes S Protein of unknown function (DUF2974) - - - - - - - - - - - - DUF2974 HNDODLHM_01646 411463.EUBVEN_02011 2.61e-158 446.0 COG0708@1|root,COG0708@2|Bacteria,1TPFB@1239|Firmicutes,24849@186801|Clostridia,25V2W@186806|Eubacteriaceae 186801|Clostridia L exodeoxyribonuclease III xth - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos HNDODLHM_01647 626939.HMPREF9443_01862 1.87e-29 104.0 COG1773@1|root,COG1773@2|Bacteria,1VEQC@1239|Firmicutes 1239|Firmicutes C rubredoxin rubR2 - - - - - - - - - - - Rubredoxin HNDODLHM_01648 1256908.HMPREF0373_02781 1.32e-95 281.0 COG1592@1|root,COG1592@2|Bacteria,1TSUY@1239|Firmicutes,248GY@186801|Clostridia,25VDD@186806|Eubacteriaceae 186801|Clostridia C Psort location Cytoplasmic, score rbr3A - - - - - - - - - - - Rubrerythrin HNDODLHM_01649 545695.TREAZ_0035 1.38e-40 139.0 COG0735@1|root,COG0735@2|Bacteria 2|Bacteria P belongs to the Fur family fur - - ko:K03711,ko:K09825 - - - - ko00000,ko03000 - - - FUR HNDODLHM_01650 428125.CLOLEP_01587 1.24e-82 257.0 COG0726@1|root,COG0726@2|Bacteria,1V6AW@1239|Firmicutes,24EU8@186801|Clostridia,3WINV@541000|Ruminococcaceae 186801|Clostridia G PFAM Polysaccharide deacetylase - - - - - - - - - - - - Polysacc_deac_1 HNDODLHM_01651 411489.CLOL250_02176 2.63e-46 177.0 COG3307@1|root,COG3307@2|Bacteria,1UK9W@1239|Firmicutes,25FS0@186801|Clostridia,36KWE@31979|Clostridiaceae 186801|Clostridia M O-Antigen ligase - - - - - - - - - - - - Wzy_C HNDODLHM_01652 478749.BRYFOR_09340 2.66e-31 121.0 COG0546@1|root,COG0546@2|Bacteria,1V1FQ@1239|Firmicutes,24G1U@186801|Clostridia 186801|Clostridia F Psort location Cytoplasmic, score - - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 HNDODLHM_01653 1121334.KB911070_gene1299 6.62e-216 627.0 COG0323@1|root,COG0323@2|Bacteria,1TPGK@1239|Firmicutes,24902@186801|Clostridia,3WHC5@541000|Ruminococcaceae 186801|Clostridia L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL - - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C HNDODLHM_01654 428125.CLOLEP_01950 0.0 1088.0 COG0249@1|root,COG0249@2|Bacteria,1TPRJ@1239|Firmicutes,248GI@186801|Clostridia,3WGM4@541000|Ruminococcaceae 186801|Clostridia L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS - - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V HNDODLHM_01655 1121334.KB911070_gene1301 3.54e-27 105.0 COG3679@1|root,COG3679@2|Bacteria,1VDFJ@1239|Firmicutes,24MY6@186801|Clostridia,3WJJP@541000|Ruminococcaceae 186801|Clostridia S Belongs to the UPF0342 family - - - - - - - - - - - - Com_YlbF HNDODLHM_01656 1120746.CCNL01000011_gene1865 6.63e-231 648.0 COG0621@1|root,COG0621@2|Bacteria,2NNUN@2323|unclassified Bacteria 2|Bacteria J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050497,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 HNDODLHM_01657 537013.CLOSTMETH_02581 3.91e-23 100.0 2B51H@1|root,31XUS@2|Bacteria,1V6KA@1239|Firmicutes,24JQP@186801|Clostridia,3WKHP@541000|Ruminococcaceae 186801|Clostridia S sporulation protein YunB yunB - - - - - - - - - - - Spore_YunB HNDODLHM_01658 1105031.HMPREF1141_0769 4.91e-28 108.0 2E3FE@1|root,32YE8@2|Bacteria,1VFR0@1239|Firmicutes,24MNV@186801|Clostridia,36W39@31979|Clostridiaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_01659 1105031.HMPREF1141_0768 8.22e-120 343.0 COG0231@1|root,COG0231@2|Bacteria,1TR8P@1239|Firmicutes,249DV@186801|Clostridia,36DS4@31979|Clostridiaceae 186801|Clostridia J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase efp - - ko:K02356 - - - - ko00000,ko03012 - - - EFP,EFP_N,Elong-fact-P_C HNDODLHM_01660 428125.CLOLEP_03279 6.22e-99 304.0 COG0006@1|root,COG0006@2|Bacteria,1TQ44@1239|Firmicutes,247SG@186801|Clostridia,3WGZP@541000|Ruminococcaceae 186801|Clostridia E Xaa-Pro aminopeptidase - - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - Creatinase_N,Peptidase_M24 HNDODLHM_01661 1120746.CCNL01000011_gene1643 2.91e-75 227.0 COG0757@1|root,COG0757@2|Bacteria,2NPMW@2323|unclassified Bacteria 2|Bacteria E Catalyzes a trans-dehydration via an enolate intermediate aroQ - 4.2.1.10 ko:K03786 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - iLJ478.TM0349 DHquinase_II HNDODLHM_01662 1105031.HMPREF1141_0762 5.27e-25 94.0 COG0828@1|root,COG0828@2|Bacteria,1VEHU@1239|Firmicutes,24QP9@186801|Clostridia,36MKD@31979|Clostridiaceae 186801|Clostridia J Belongs to the bacterial ribosomal protein bS21 family rpsU - - ko:K02970 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S21 HNDODLHM_01663 1120746.CCNL01000012_gene1931 0.0 1349.0 COG0495@1|root,COG0495@2|Bacteria,2NNQH@2323|unclassified Bacteria 2|Bacteria J Belongs to the class-I aminoacyl-tRNA synthetase family leuS GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 ko:K01869 ko00970,map00970 M00359,M00360 R03657 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Anticodon_1,tRNA-synt_1,tRNA-synt_1_2 HNDODLHM_01664 428125.CLOLEP_03286 8.26e-44 145.0 COG0799@1|root,COG0799@2|Bacteria,1VA2Z@1239|Firmicutes,24MVA@186801|Clostridia,3WJVU@541000|Ruminococcaceae 186801|Clostridia J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation rsfS - - ko:K09710 - - - - ko00000,ko03009 - - - RsfS HNDODLHM_01665 428125.CLOLEP_03287 1.45e-68 214.0 COG1713@1|root,COG1713@2|Bacteria,1V6Y1@1239|Firmicutes,24HN2@186801|Clostridia,3WJZX@541000|Ruminococcaceae 186801|Clostridia H HD superfamily hydrolase involved in NAD metabolism nadD - 2.7.7.18 ko:K00969 ko00760,ko01100,map00760,map01100 M00115 R00137,R03005 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like,HD HNDODLHM_01666 1105031.HMPREF1141_2676 2.87e-50 168.0 COG1057@1|root,COG1057@2|Bacteria,1V3SK@1239|Firmicutes,24JFM@186801|Clostridia,36I7Z@31979|Clostridiaceae 186801|Clostridia H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) nadD - 2.7.7.18 ko:K00969 ko00760,ko01100,map00760,map01100 M00115 R00137,R03005 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_like HNDODLHM_01667 428125.CLOLEP_03289 7.19e-39 132.0 COG1534@1|root,COG1534@2|Bacteria,1VEGM@1239|Firmicutes,24QZB@186801|Clostridia,3WKIM@541000|Ruminococcaceae 186801|Clostridia J RNA-binding protein, YhbY family yhbY - - ko:K07574 - - - - ko00000,ko03009 - - - CRS1_YhbY HNDODLHM_01668 1105031.HMPREF1141_2674 2.01e-77 237.0 COG0127@1|root,COG0127@2|Bacteria,1V6RN@1239|Firmicutes,249GK@186801|Clostridia,36HYU@31979|Clostridiaceae 186801|Clostridia F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions rdgB - 3.6.1.66 ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000 - - - Ham1p_like HNDODLHM_01669 428125.CLOLEP_03292 2.48e-157 448.0 COG0552@1|root,COG0552@2|Bacteria,1TPRI@1239|Firmicutes,247JD@186801|Clostridia,3WGFT@541000|Ruminococcaceae 186801|Clostridia U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) ftsY - - ko:K03110 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2,3.A.5.7 - - SRP54,SRP54_N HNDODLHM_01670 1120746.CCNL01000012_gene1938 0.0 988.0 COG1196@1|root,COG1196@2|Bacteria,2NNYZ@2323|unclassified Bacteria 2|Bacteria D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N,SMC_hinge HNDODLHM_01671 1120746.CCNL01000012_gene1939 2.06e-97 297.0 COG1243@1|root,COG1243@2|Bacteria 2|Bacteria BK radical SAM domain protein - - 2.3.1.48 ko:K07739 - - - - ko00000,ko01000,ko03016,ko03036 - - - Acetyltransf_1,Fer4_14,Radical_SAM,Radical_SAM_C HNDODLHM_01672 428125.CLOLEP_03295 5.67e-108 317.0 COG0571@1|root,COG0571@2|Bacteria,1TPGC@1239|Firmicutes,249QD@186801|Clostridia,3WG7D@541000|Ruminococcaceae 186801|Clostridia J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism rnc - 3.1.26.3 ko:K03685 ko03008,ko05205,map03008,map05205 - - - ko00000,ko00001,ko01000,ko03009,ko03019,ko03036 - - - Ribonucleas_3_3,dsrm HNDODLHM_01673 428125.CLOLEP_03296 1.47e-143 415.0 COG0416@1|root,COG0416@2|Bacteria,1TPXS@1239|Firmicutes,247KW@186801|Clostridia,3WGC6@541000|Ruminococcaceae 186801|Clostridia I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA plsX - 2.3.1.15 ko:K03621 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FA_synthesis HNDODLHM_01674 1120746.CCNL01000012_gene1942 1.29e-211 596.0 COG1206@1|root,COG1206@2|Bacteria,2NS4B@2323|unclassified Bacteria 2|Bacteria J Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs trmFO GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 ko:K04094 - - - - ko00000,ko01000,ko03016,ko03036 - - - GIDA HNDODLHM_01675 428125.CLOLEP_03298 0.0 926.0 COG0550@1|root,COG0550@2|Bacteria,1TPUS@1239|Firmicutes,248MG@186801|Clostridia,3WGDZ@541000|Ruminococcaceae 186801|Clostridia L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone topA - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_bac,Toprim,zf-C4_Topoisom HNDODLHM_01676 1105031.HMPREF1141_2666 5.46e-70 234.0 COG0758@1|root,COG0758@2|Bacteria,1TPP7@1239|Firmicutes,24AS2@186801|Clostridia,36EJZ@31979|Clostridiaceae 186801|Clostridia LU DNA protecting protein DprA dprA - - ko:K04096 - - - - ko00000 - - - DNA_processg_A HNDODLHM_01677 428125.CLOLEP_03300 3.18e-83 257.0 COG0566@1|root,COG0566@2|Bacteria,1V3JP@1239|Firmicutes,248DV@186801|Clostridia,3WIQ9@541000|Ruminococcaceae 186801|Clostridia J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family spoU - - ko:K03437 - - - - ko00000,ko03016 - - - SpoU_methylase,SpoU_sub_bind HNDODLHM_01678 428125.CLOLEP_03301 2.22e-66 202.0 COG0292@1|root,COG0292@2|Bacteria,1V6DB@1239|Firmicutes,24JBJ@186801|Clostridia,3WIYY@541000|Ruminococcaceae 186801|Clostridia J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit rplT - - ko:K02887 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L20 HNDODLHM_01679 428125.CLOLEP_03302 5.89e-34 117.0 COG0291@1|root,COG0291@2|Bacteria,1VF5W@1239|Firmicutes,24QJD@186801|Clostridia,3WKKQ@541000|Ruminococcaceae 186801|Clostridia J Ribosomal protein L35 rpmI - - ko:K02916 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L35p HNDODLHM_01680 428125.CLOLEP_03303 6.37e-97 286.0 COG0290@1|root,COG0290@2|Bacteria,1V1RC@1239|Firmicutes,24FUS@186801|Clostridia,3WIZW@541000|Ruminococcaceae 186801|Clostridia J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins infC - - ko:K02520 - - - - ko00000,ko03012,ko03029 - - - IF3_C,IF3_N HNDODLHM_01681 428125.CLOLEP_02105 6.45e-141 407.0 COG0264@1|root,COG0264@2|Bacteria,1TPFJ@1239|Firmicutes,248J2@186801|Clostridia,3WGCR@541000|Ruminococcaceae 186801|Clostridia J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome tsf - - ko:K02357 - - - - ko00000,ko03012,ko03029 - - - EF_TS HNDODLHM_01682 1105031.HMPREF1141_0183 1.26e-144 410.0 COG0052@1|root,COG0052@2|Bacteria,1TPNA@1239|Firmicutes,247ZR@186801|Clostridia,36DHW@31979|Clostridiaceae 186801|Clostridia J Belongs to the universal ribosomal protein uS2 family rpsB - - ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S2 HNDODLHM_01684 663278.Ethha_1626 9.46e-17 75.9 COG1873@1|root,COG1873@2|Bacteria,1VGWH@1239|Firmicutes,259AU@186801|Clostridia,3WKPN@541000|Ruminococcaceae 186801|Clostridia S sporulation protein, YlmC YmxH family - - - - - - - - - - - - PRC HNDODLHM_01685 318464.IO99_15925 8.43e-99 298.0 COG1307@1|root,COG1307@2|Bacteria,1TQDI@1239|Firmicutes,24ADT@186801|Clostridia,36EZJ@31979|Clostridiaceae 186801|Clostridia S DegV family - - - - - - - - - - - - DegV HNDODLHM_01686 1120746.CCNL01000011_gene1798 9.54e-40 146.0 2APHB@1|root,31EKA@2|Bacteria,2NRSM@2323|unclassified Bacteria 2|Bacteria S Sporulation factor SpoIIGA - - - - - - - - - - - - Peptidase_U4 HNDODLHM_01687 428125.CLOLEP_02097 1.29e-109 321.0 COG1191@1|root,COG1191@2|Bacteria,1TP3T@1239|Firmicutes,24A4T@186801|Clostridia,3WGM5@541000|Ruminococcaceae 186801|Clostridia K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released sigE - - ko:K03091 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4 HNDODLHM_01689 177437.HRM2_22860 4.91e-59 195.0 COG0668@1|root,COG0668@2|Bacteria,1N596@1224|Proteobacteria,42M0U@68525|delta/epsilon subdivisions,2WJR5@28221|Deltaproteobacteria,2MIAJ@213118|Desulfobacterales 28221|Deltaproteobacteria M Mechanosensitive ion channel - - - ko:K03442 - - - - ko00000,ko02000 1.A.23.2 - - LysM,MS_channel,TM_helix HNDODLHM_01691 428125.CLOLEP_00557 1.46e-165 471.0 COG0205@1|root,COG0205@2|Bacteria,1TPF4@1239|Firmicutes,248PB@186801|Clostridia,3WH67@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis pfkA - 2.7.1.11 ko:K00850 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230 M00001,M00345 R00756,R03236,R03237,R03238,R03239,R04779 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000,ko01009,ko03019 - - - PFK HNDODLHM_01693 1105031.HMPREF1141_1640 2.89e-59 187.0 COG4463@1|root,COG4463@2|Bacteria,1VAXT@1239|Firmicutes,24JH3@186801|Clostridia,36JKR@31979|Clostridiaceae 186801|Clostridia K Belongs to the CtsR family ctsR - - ko:K03708 - - - - ko00000,ko03000 - - - CtsR HNDODLHM_01694 592015.HMPREF1705_00208 4.23e-33 122.0 COG3880@1|root,COG3880@2|Bacteria,3TBG4@508458|Synergistetes 508458|Synergistetes S PFAM UvrB uvrC - - - ko:K19411 - - - - ko00000 - - - UVR HNDODLHM_01695 1105031.HMPREF1141_1642 1.09e-120 357.0 COG3869@1|root,COG3869@2|Bacteria,1TPBA@1239|Firmicutes,247SS@186801|Clostridia,36DF3@31979|Clostridiaceae 186801|Clostridia E Catalyzes the specific phosphorylation of arginine residues in proteins mcsB - 2.7.14.1 ko:K19405 - - R11090 RC00002,RC00203 ko00000,ko01000 - - - ATP-gua_Ptrans HNDODLHM_01696 1105031.HMPREF1141_1643 0.0 1051.0 COG0542@1|root,COG0542@2|Bacteria,1TPMU@1239|Firmicutes,247TD@186801|Clostridia,36DF4@31979|Clostridiaceae 186801|Clostridia O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpC - - ko:K03696 ko01100,map01100 - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N,UVR HNDODLHM_01697 1304866.K413DRAFT_1842 1.58e-23 97.4 COG5652@1|root,COG5652@2|Bacteria 2|Bacteria - - - - - ko:K07098 - - - - ko00000 - - - VanZ HNDODLHM_01698 1280692.AUJL01000004_gene673 6.32e-158 462.0 COG0534@1|root,COG0534@2|Bacteria,1TP5P@1239|Firmicutes,247PQ@186801|Clostridia,36VMU@31979|Clostridiaceae 186801|Clostridia V Psort location CytoplasmicMembrane, score - - - - - - - - - - - - MatE HNDODLHM_01700 489825.LYNGBM3L_56700 0.000591 47.4 COG1994@1|root,COG1994@2|Bacteria,1G05Y@1117|Cyanobacteria,1H8MI@1150|Oscillatoriales 1117|Cyanobacteria S Belongs to the peptidase M50B family - - - ko:K06402 - - - - ko00000,ko01000,ko01002 - - - CBS,Peptidase_M50,Peptidase_M50B HNDODLHM_01701 1120746.CCNL01000011_gene1718 0.0 903.0 COG1032@1|root,COG1032@2|Bacteria,2NNKI@2323|unclassified Bacteria 2|Bacteria C Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - DUF2344,Radical_SAM HNDODLHM_01702 1120746.CCNL01000011_gene1719 7.35e-67 212.0 COG5011@1|root,COG5011@2|Bacteria 2|Bacteria C Protein conserved in bacteria - - - - - - - - - - - - DUF2344,Radical_SAM HNDODLHM_01704 1256908.HMPREF0373_01351 7.87e-127 370.0 COG1242@1|root,COG1242@2|Bacteria,1TQ57@1239|Firmicutes,247U3@186801|Clostridia,25V7W@186806|Eubacteriaceae 186801|Clostridia S radical SAM protein, TIGR01212 family ytqA - - ko:K07139 - - - - ko00000 - - - Radical_SAM,Radical_SAM_C HNDODLHM_01707 1120746.CCNL01000011_gene1788 1.89e-136 390.0 COG0528@1|root,COG0528@2|Bacteria,2NNRY@2323|unclassified Bacteria 2|Bacteria F Catalyzes the reversible phosphorylation of UMP to UDP pyrH GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006225,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009163,GO:0009165,GO:0009185,GO:0009188,GO:0009193,GO:0009194,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046048,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.4.22 ko:K09903 ko00240,ko01100,map00240,map01100 - R00158 RC00002 ko00000,ko00001,ko01000 - - iSB619.SA_RS06240 AA_kinase HNDODLHM_01708 428125.CLOLEP_02960 2.94e-78 238.0 COG0233@1|root,COG0233@2|Bacteria,1V1F2@1239|Firmicutes,24HWS@186801|Clostridia,3WIRX@541000|Ruminococcaceae 186801|Clostridia J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another frr - - ko:K02838 - - - - ko00000,ko03012 - - - RRF HNDODLHM_01709 428125.CLOLEP_02961 6.04e-114 333.0 COG0020@1|root,COG0020@2|Bacteria,1TQTS@1239|Firmicutes,247TE@186801|Clostridia,3WGF5@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids uppS - 2.5.1.31 ko:K00806 ko00900,ko01110,map00900,map01110 - R06447 RC00279,RC02839 ko00000,ko00001,ko01000,ko01006 - - - Prenyltransf HNDODLHM_01710 428125.CLOLEP_02962 7.81e-49 170.0 COG0575@1|root,COG0575@2|Bacteria,1UPNB@1239|Firmicutes,248BP@186801|Clostridia,3WH2Z@541000|Ruminococcaceae 186801|Clostridia I Psort location CytoplasmicMembrane, score 10.00 cdsA - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 HNDODLHM_01711 1120746.CCNL01000011_gene1784 3.4e-170 487.0 COG0743@1|root,COG0743@2|Bacteria,2NNW2@2323|unclassified Bacteria 2|Bacteria I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) dxr GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0050897,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 ko:K00099 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05688 RC01452 ko00000,ko00001,ko00002,ko01000 - - iAPECO1_1312.APECO1_1814,iECOK1_1307.ECOK1_0174,iECS88_1305.ECS88_0183,iHN637.CLJU_RS06420,iNJ661.Rv2870c,iUMN146_1321.UM146_23670,iUTI89_1310.UTI89_C0188 DXPR_C,DXP_redisom_C,DXP_reductoisom HNDODLHM_01712 428125.CLOLEP_02964 1.34e-107 330.0 COG0750@1|root,COG0750@2|Bacteria,1TPMC@1239|Firmicutes,247MT@186801|Clostridia,3WGQW@541000|Ruminococcaceae 186801|Clostridia M Metalloprotease rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 HNDODLHM_01713 428125.CLOLEP_02965 8.88e-187 526.0 COG0821@1|root,COG0821@2|Bacteria,1TPFR@1239|Firmicutes,247N1@186801|Clostridia,3WGBA@541000|Ruminococcaceae 186801|Clostridia I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate ispG - 1.17.7.1,1.17.7.3 ko:K03526 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R08689,R10859 RC01486 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS06430 GcpE HNDODLHM_01714 428125.CLOLEP_02966 0.0 1859.0 COG2176@1|root,COG2176@2|Bacteria,1TPAG@1239|Firmicutes,248YB@186801|Clostridia,3WGJN@541000|Ruminococcaceae 186801|Clostridia L Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity polC - 2.7.7.7 ko:K02342,ko:K03763 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_a_NI,DNA_pol3_a_NII,DNA_pol3_alpha,HHH_6,PHP,RNase_T,tRNA_anti-codon HNDODLHM_01715 1280689.AUJC01000010_gene1811 6.94e-74 243.0 COG0628@1|root,COG0628@2|Bacteria,1TQ84@1239|Firmicutes,248FS@186801|Clostridia,36EE4@31979|Clostridiaceae 186801|Clostridia S hmm pf01594 yhhT - - - - - - - - - - - AI-2E_transport HNDODLHM_01716 428125.CLOLEP_02968 8.63e-135 398.0 COG3705@1|root,COG3705@2|Bacteria,1TPZZ@1239|Firmicutes,248CB@186801|Clostridia,3WGQF@541000|Ruminococcaceae 186801|Clostridia E Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine hisZ - - ko:K02502 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002 - - - tRNA-synt_His HNDODLHM_01717 1120746.CCNL01000011_gene1779 2.99e-107 313.0 COG0040@1|root,COG0040@2|Bacteria,2NPCD@2323|unclassified Bacteria 2|Bacteria E Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity hisG GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 ko:K00765,ko:K02502 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002,ko01000 - - - HisG HNDODLHM_01718 428125.CLOLEP_02970 1.77e-212 598.0 COG0141@1|root,COG0141@2|Bacteria,1TPAW@1239|Firmicutes,248X8@186801|Clostridia,3WGCJ@541000|Ruminococcaceae 186801|Clostridia E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine hisD - 1.1.1.23 ko:K00013 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01158,R01163,R03012 RC00099,RC00242,RC00463 ko00000,ko00001,ko00002,ko01000 - - - Histidinol_dh HNDODLHM_01719 428125.CLOLEP_02971 2.93e-124 369.0 COG0079@1|root,COG0079@2|Bacteria,1TPUV@1239|Firmicutes,24837@186801|Clostridia,3WGEN@541000|Ruminococcaceae 186801|Clostridia E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC GO:0003674,GO:0003824,GO:0008110,GO:0008483,GO:0016740,GO:0016769 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 HNDODLHM_01720 428125.CLOLEP_02972 1.53e-86 259.0 COG0131@1|root,COG0131@2|Bacteria,1TRH7@1239|Firmicutes,247WC@186801|Clostridia,3WH5P@541000|Ruminococcaceae 186801|Clostridia E Imidazoleglycerol-phosphate dehydratase hisB - 4.2.1.19 ko:K01693 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03457 RC00932 ko00000,ko00001,ko00002,ko01000 - - - IGPD HNDODLHM_01721 445972.ANACOL_01968 3.47e-97 290.0 COG0106@1|root,COG0106@2|Bacteria,1V1IR@1239|Firmicutes,24GBJ@186801|Clostridia,3WH1N@541000|Ruminococcaceae 186801|Clostridia E 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase hisA - 5.3.1.16 ko:K01814 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04640 RC00945 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth HNDODLHM_01722 1232443.BAIA02000077_gene312 3.91e-60 186.0 COG0139@1|root,COG0139@2|Bacteria,1UYNA@1239|Firmicutes,247RS@186801|Clostridia 186801|Clostridia E Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP hisI - 3.5.4.19,3.6.1.31 ko:K01496,ko:K11755 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035,R04037 RC00002,RC01055 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS05760 His_biosynth,PRA-CH,PRA-PH HNDODLHM_01723 428125.CLOLEP_02974 3.79e-55 174.0 COG0140@1|root,COG0140@2|Bacteria,1VB6S@1239|Firmicutes,24MP1@186801|Clostridia,3WJ8Q@541000|Ruminococcaceae 186801|Clostridia E Phosphoribosyl-ATP hisE - 3.6.1.31 ko:K01523 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035 RC00002 ko00000,ko00001,ko00002,ko01000 - - - PRA-PH HNDODLHM_01725 428125.CLOLEP_02630 5.06e-167 483.0 COG0621@1|root,COG0621@2|Bacteria,1TPBR@1239|Firmicutes,247IX@186801|Clostridia,3WG80@541000|Ruminococcaceae 186801|Clostridia J tRNA methylthiotransferase YqeV yqeV - 2.8.4.5 ko:K18707 - - R10649 RC00003,RC03221 ko00000,ko01000,ko03016 - - - Radical_SAM,UPF0004 HNDODLHM_01726 1120746.CCNL01000012_gene1927 1.17e-108 333.0 COG1649@1|root,COG1649@2|Bacteria,2NP67@2323|unclassified Bacteria 2|Bacteria S Glycosyl hydrolase-like 10 - - - - - - - - - - - - Big_2,GHL10 HNDODLHM_01727 663278.Ethha_1081 1.52e-17 77.8 COG3326@1|root,COG3326@2|Bacteria 2|Bacteria L Membrane ysdA - - - - - - - - - - - CSD,DUF1294 HNDODLHM_01728 428125.CLOLEP_02664 8.46e-75 238.0 COG0564@1|root,COG0564@2|Bacteria,1TS1T@1239|Firmicutes,249AH@186801|Clostridia,3WI75@541000|Ruminococcaceae 186801|Clostridia J Responsible for synthesis of pseudouridine from uracil rluD_2 - 5.4.99.23 ko:K06180 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2 HNDODLHM_01729 1105031.HMPREF1141_2476 2.77e-141 409.0 COG1493@1|root,COG1493@2|Bacteria,1TP5Z@1239|Firmicutes,24999@186801|Clostridia,36F8F@31979|Clostridiaceae 186801|Clostridia F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion hprK - - ko:K06023 - - - - ko00000,ko01000 - - - Hpr_kinase_C,Hpr_kinase_N HNDODLHM_01730 428125.CLOLEP_00067 7.51e-104 312.0 COG0812@1|root,COG0812@2|Bacteria,1TP3W@1239|Firmicutes,247IU@186801|Clostridia,3WGX6@541000|Ruminococcaceae 186801|Clostridia M Cell wall formation murB - 1.3.1.98 ko:K00075 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R03191,R03192 RC02639 ko00000,ko00001,ko01000,ko01011 - - - FAD_binding_4,MurB_C HNDODLHM_01731 428125.CLOLEP_00068 4.08e-109 324.0 COG1660@1|root,COG1660@2|Bacteria,1TPS4@1239|Firmicutes,248KQ@186801|Clostridia,3WGDD@541000|Ruminococcaceae 186801|Clostridia S Displays ATPase and GTPase activities yvcJ - - ko:K06958 - - - - ko00000,ko03019 - - - ATP_bind_2 HNDODLHM_01732 1105031.HMPREF1141_2479 5.28e-82 257.0 COG1481@1|root,COG1481@2|Bacteria,1TP2X@1239|Firmicutes,2484M@186801|Clostridia,36EVX@31979|Clostridiaceae 186801|Clostridia K May be required for sporulation whiA - - ko:K09762 - - - - ko00000 - - - HTH_WhiA,LAGLIDADG_WhiA,WhiA_N HNDODLHM_01733 545264.KB898746_gene691 5.17e-05 45.1 COG1722@1|root,COG1722@2|Bacteria 2|Bacteria L exodeoxyribonuclease VII activity xseB GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 ko:K03602 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_S HNDODLHM_01734 428125.CLOLEP_03163 6.45e-116 342.0 COG0142@1|root,COG0142@2|Bacteria,1TPQY@1239|Firmicutes,248DE@186801|Clostridia,3WINP@541000|Ruminococcaceae 186801|Clostridia H Belongs to the FPP GGPP synthase family ispA - 2.5.1.1,2.5.1.10,2.5.1.29 ko:K13789 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00364,M00366 R01658,R02003,R02061 RC00279 ko00000,ko00001,ko00002,ko01000,ko01006 - - iHN637.CLJU_RS05465 polyprenyl_synt HNDODLHM_01735 428125.CLOLEP_03162 4.67e-263 742.0 COG1154@1|root,COG1154@2|Bacteria,1TP37@1239|Firmicutes,247P1@186801|Clostridia,3WGVF@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C HNDODLHM_01736 1120746.CCNL01000011_gene1761 5.84e-129 373.0 COG1189@1|root,COG1189@2|Bacteria,2NPHR@2323|unclassified Bacteria 2|Bacteria J FtsJ-like methyltransferase rrmJ - 2.1.1.226,2.1.1.227 ko:K06442 - - - - ko00000,ko01000,ko03009 - - - FtsJ,S4 HNDODLHM_01737 428125.CLOLEP_03160 3.94e-79 248.0 COG0061@1|root,COG0061@2|Bacteria,1TRB3@1239|Firmicutes,24BG6@186801|Clostridia,3WHYS@541000|Ruminococcaceae 186801|Clostridia H Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP nadK - 2.7.1.23 ko:K00858 ko00760,ko01100,map00760,map01100 - R00104 RC00002,RC00078 ko00000,ko00001,ko01000 - - iHN637.CLJU_RS05480 NAD_kinase HNDODLHM_01738 1121334.KB911066_gene620 1.22e-53 173.0 COG1438@1|root,COG1438@2|Bacteria,1V1R7@1239|Firmicutes,24HGQ@186801|Clostridia,3WJZ0@541000|Ruminococcaceae 186801|Clostridia K Regulates arginine biosynthesis genes argR - - ko:K03402 - - - - ko00000,ko03000 - - - Arg_repressor,Arg_repressor_C HNDODLHM_01739 1120746.CCNL01000011_gene1758 6.96e-169 497.0 COG0497@1|root,COG0497@2|Bacteria,2NNUS@2323|unclassified Bacteria 2|Bacteria L May be involved in recombinational repair of damaged DNA recN GO:0000724,GO:0000725,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009295,GO:0009314,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0030312,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:1901360 - ko:K03631,ko:K13582 ko04112,map04112 - - - ko00000,ko00001,ko03400 - - - AAA_23,SMC_N HNDODLHM_01740 1125725.HMPREF1325_2244 5.74e-29 106.0 2CFWV@1|root,32S2P@2|Bacteria,2J8P1@203691|Spirochaetes 203691|Spirochaetes - - - - - - - - - - - - - - - HNDODLHM_01741 97139.C824_00665 4.02e-18 79.3 2ENSY@1|root,33GE3@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - HNDODLHM_01742 411459.RUMOBE_01365 3.87e-49 157.0 2DXD5@1|root,344HG@2|Bacteria 2|Bacteria S Domain of unknown function (DUF4160) - - - - - - - - - - - - DUF4160 HNDODLHM_01743 428125.CLOLEP_03099 6.04e-233 671.0 COG0608@1|root,COG0608@2|Bacteria,1TPXE@1239|Firmicutes,247NU@186801|Clostridia,3WI09@541000|Ruminococcaceae 186801|Clostridia L exonuclease recJ - - ko:K07462 ko03410,ko03430,ko03440,map03410,map03430,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DHH,DHHA1 HNDODLHM_01744 428125.CLOLEP_03100 0.0 891.0 COG0317@1|root,COG0317@2|Bacteria,1TNYZ@1239|Firmicutes,2489A@186801|Clostridia,3WGUK@541000|Ruminococcaceae 186801|Clostridia KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance relA - 2.7.6.5 ko:K00951 ko00230,map00230 - R00429 RC00002,RC00078 ko00000,ko00001,ko01000 - - iHN637.CLJU_RS16615 ACT_4,HD_4,RelA_SpoT,TGS HNDODLHM_01745 537013.CLOSTMETH_01174 6.56e-66 204.0 COG1490@1|root,COG1490@2|Bacteria,1V6GH@1239|Firmicutes,24J90@186801|Clostridia,3WJM2@541000|Ruminococcaceae 186801|Clostridia J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality dtd - - ko:K07560 - - - - ko00000,ko01000,ko03016 - - - Tyr_Deacylase HNDODLHM_01746 97138.C820_01432 9.36e-56 182.0 COG0491@1|root,COG0491@2|Bacteria,1V6FA@1239|Firmicutes,24JGV@186801|Clostridia,36I3Z@31979|Clostridiaceae 186801|Clostridia S domain protein - - - - - - - - - - - - Lactamase_B HNDODLHM_01747 428125.CLOLEP_03103 4.64e-181 523.0 COG0635@1|root,COG0635@2|Bacteria,1TREM@1239|Firmicutes,247JT@186801|Clostridia,3WGA8@541000|Ruminococcaceae 186801|Clostridia C Coproporphyrinogen dehydrogenase hemZ - - - - - - - - - - - Radical_SAM HNDODLHM_01749 428125.CLOLEP_03106 2.84e-166 494.0 COG2244@1|root,COG2244@2|Bacteria,1TNYX@1239|Firmicutes,2485G@186801|Clostridia,3WH0Z@541000|Ruminococcaceae 186801|Clostridia S Polysaccharide biosynthesis protein - - - ko:K06409 - - - - ko00000,ko02000 2.A.66.2.14 - - Polysacc_synt,Polysacc_synt_C HNDODLHM_01750 428125.CLOLEP_03108 1.93e-123 359.0 COG1694@1|root,COG3956@2|Bacteria,1TPK1@1239|Firmicutes,247XM@186801|Clostridia,3WHY1@541000|Ruminococcaceae 186801|Clostridia S MazG family mazG - 3.6.1.66 ko:K02428,ko:K02499 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000,ko03036 - - - MazG,TP_methylase HNDODLHM_01751 1262915.BN574_01345 6.65e-36 124.0 COG0776@1|root,COG0776@2|Bacteria,1V9XQ@1239|Firmicutes,4H539@909932|Negativicutes 909932|Negativicutes L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions hup - - ko:K03530 - - - - ko00000,ko03032,ko03036,ko03400 - - - Bac_DNA_binding HNDODLHM_01752 411473.RUMCAL_01132 5.98e-34 118.0 COG1188@1|root,COG1188@2|Bacteria,1VEI5@1239|Firmicutes,24QNF@186801|Clostridia,3WKNC@541000|Ruminococcaceae 186801|Clostridia J S4 domain protein hslR - - - - - - - - - - - S4 HNDODLHM_01753 428125.CLOLEP_03271 5.45e-19 81.3 2E3ZZ@1|root,32YWW@2|Bacteria,1VEIW@1239|Firmicutes,24QNQ@186801|Clostridia,3WKKJ@541000|Ruminococcaceae 186801|Clostridia S Sporulation protein YabP yabP - - - - - - - - - - - YabP HNDODLHM_01754 663278.Ethha_0352 1.75e-09 58.9 COG2919@1|root,COG2919@2|Bacteria,1VKC5@1239|Firmicutes,24WD9@186801|Clostridia,3WMB8@541000|Ruminococcaceae 186801|Clostridia D Septum formation initiator - - - ko:K13052 - - - - ko00000,ko03036 - - - DivIC HNDODLHM_01755 1120746.CCNL01000011_gene1826 5.1e-44 149.0 COG1098@1|root,COG1098@2|Bacteria 2|Bacteria J S1 RNA binding domain yabR - - ko:K07570,ko:K07571 - - - - ko00000 - - - S1 HNDODLHM_01756 1105031.HMPREF1141_2103 1.83e-65 205.0 COG1544@1|root,COG1544@2|Bacteria,1V1D5@1239|Firmicutes,24HDH@186801|Clostridia,36I5Z@31979|Clostridiaceae 186801|Clostridia J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase hpf - - ko:K05808 - - - - ko00000,ko03009 - - - Ribosom_S30AE_C,Ribosomal_S30AE HNDODLHM_01757 428125.CLOLEP_03264 3.9e-154 445.0 COG0116@1|root,COG0116@2|Bacteria,1TP0X@1239|Firmicutes,248MA@186801|Clostridia,3WGN5@541000|Ruminococcaceae 186801|Clostridia L Belongs to the methyltransferase superfamily ypsC - - ko:K07444 - - - - ko00000,ko01000 - - - THUMP,UPF0020 HNDODLHM_01759 428125.CLOLEP_00564 4.05e-99 291.0 COG3481@1|root,COG3481@2|Bacteria,1TQEK@1239|Firmicutes,24BRR@186801|Clostridia,3WIKZ@541000|Ruminococcaceae 186801|Clostridia S metal-dependent phosphohydrolase, HD sub domain - - - - - - - - - - - - HD HNDODLHM_01760 428125.CLOLEP_03177 4.53e-297 831.0 COG0272@1|root,COG0272@2|Bacteria,1TPQ3@1239|Firmicutes,248AX@186801|Clostridia,3WGTP@541000|Ruminococcaceae 186801|Clostridia L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA - 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 HNDODLHM_01762 428125.CLOLEP_03176 1.17e-82 260.0 COG3854@1|root,COG3854@2|Bacteria,1TQ23@1239|Firmicutes,248S2@186801|Clostridia,3WGH3@541000|Ruminococcaceae 186801|Clostridia S stage III sporulation protein AA spoIIIAA - - ko:K06390 - - - - ko00000 - - - T2SSE HNDODLHM_01764 537013.CLOSTMETH_02787 1.35e-23 90.9 2E555@1|root,32ZY3@2|Bacteria,1VEM4@1239|Firmicutes,24QNR@186801|Clostridia,3WKGF@541000|Ruminococcaceae 186801|Clostridia S stage III sporulation protein AC spoIIIAC - - ko:K06392 - - - - ko00000 - - - SpoIIIAC HNDODLHM_01765 537013.CLOSTMETH_02786 6.87e-19 83.6 2CPUI@1|root,32SJW@2|Bacteria,1VA9Y@1239|Firmicutes,24NK6@186801|Clostridia 186801|Clostridia S Stage III sporulation protein AD spoIIIAD - - ko:K06393 - - - - ko00000 - - - SpoIIIAC HNDODLHM_01766 1120746.CCNL01000011_gene1594 4.37e-52 184.0 2C2CG@1|root,2Z7PW@2|Bacteria 2|Bacteria S stage III sporulation protein AE spoIIIAE - - ko:K06394 - - - - ko00000 - - - Spore_III_AE HNDODLHM_01768 428125.CLOLEP_03169 3.37e-13 70.9 2E6BB@1|root,32FH3@2|Bacteria,1V7J4@1239|Firmicutes,24J8Z@186801|Clostridia,3WKIY@541000|Ruminococcaceae 186801|Clostridia S stage III sporulation protein AG spoIIIAG - - ko:K06396 - - - - ko00000 - - - - HNDODLHM_01769 1121344.JHZO01000004_gene1612 3.88e-08 58.5 2E3US@1|root,32YS3@2|Bacteria 2|Bacteria S Stage III sporulation protein spoIIIAH - - ko:K06397 - - - - ko00000 1.A.34.1.1 - - SpoIIIAH HNDODLHM_01770 1121333.JMLH01000046_gene956 1.25e-113 328.0 COG1670@1|root,COG1670@2|Bacteria,1V6E0@1239|Firmicutes,3VQWF@526524|Erysipelotrichia 526524|Erysipelotrichia J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 HNDODLHM_01771 1504822.CCNO01000011_gene176 9.6e-197 558.0 COG0366@1|root,COG0366@2|Bacteria,2NPAG@2323|unclassified Bacteria 2|Bacteria G PFAM Alpha amylase, catalytic malS - 3.2.1.1 ko:K01176 ko00500,ko01100,ko04973,map00500,map01100,map04973 - R02108,R02112,R11262 - ko00000,ko00001,ko01000 - GH13 - Alpha-amylase HNDODLHM_01772 556261.HMPREF0240_01392 4.57e-121 350.0 COG0655@1|root,COG0655@2|Bacteria,1UI36@1239|Firmicutes,247R8@186801|Clostridia,36HCH@31979|Clostridiaceae 186801|Clostridia S NADPH-dependent FMN reductase - - - - - - - - - - - - FMN_red HNDODLHM_01773 411483.FAEPRAA2165_00750 3.19e-41 137.0 COG4115@1|root,COG4115@2|Bacteria,1VEN0@1239|Firmicutes,24MYT@186801|Clostridia,3WQ5F@541000|Ruminococcaceae 186801|Clostridia S YoeB-like toxin of bacterial type II toxin-antitoxin system - - - ko:K19158 - - - - ko00000,ko01000,ko02048 - - - YoeB_toxin HNDODLHM_01774 1410628.JNKS01000011_gene2644 3.58e-26 99.4 COG3077@1|root,COG3077@2|Bacteria,1TU5Z@1239|Firmicutes,25N1P@186801|Clostridia,27QG0@186928|unclassified Lachnospiraceae 186801|Clostridia L Addiction module antitoxin, RelB DinJ family - - - - - - - - - - - - RelB HNDODLHM_01775 411473.RUMCAL_00791 4.16e-257 709.0 COG1454@1|root,COG1454@2|Bacteria,1TPB4@1239|Firmicutes,247IQ@186801|Clostridia,3WHK1@541000|Ruminococcaceae 186801|Clostridia C belongs to the iron- containing alcohol dehydrogenase family adh - - - - - - - - - - - Fe-ADH HNDODLHM_01776 1123288.SOV_6c02250 7.08e-27 114.0 COG0583@1|root,COG0583@2|Bacteria,1VD3Q@1239|Firmicutes,4H5EE@909932|Negativicutes 909932|Negativicutes K LysR substrate binding domain - - - ko:K09681 - - - - ko00000,ko03000 - - - HTH_1,LysR_substrate HNDODLHM_01777 1203606.HMPREF1526_03160 3.46e-170 489.0 COG0304@1|root,COG0304@2|Bacteria,1TPA7@1239|Firmicutes,247VF@186801|Clostridia,36E5Q@31979|Clostridiaceae 186801|Clostridia I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - 2.3.1.179 ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt HNDODLHM_01778 1123405.AUMM01000016_gene2465 1.41e-255 717.0 COG0318@1|root,COG0318@2|Bacteria,1TPSX@1239|Firmicutes,4HE02@91061|Bacilli 91061|Bacilli IQ AMP-binding enzyme C-terminal domain - - - - - - - - - - - - AMP-binding,AMP-binding_C HNDODLHM_01779 476272.RUMHYD_00231 2.53e-33 121.0 COG0824@1|root,COG0824@2|Bacteria,1VAGM@1239|Firmicutes,24NBX@186801|Clostridia,3Y0GI@572511|Blautia 186801|Clostridia S Thioesterase-like superfamily FcbC - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 HNDODLHM_01780 411469.EUBHAL_00190 4.54e-51 164.0 COG0347@1|root,COG0347@2|Bacteria,1V9Z5@1239|Firmicutes,24MNA@186801|Clostridia,25X0F@186806|Eubacteriaceae 186801|Clostridia K Nitrogen regulatory protein P-II glnB - - ko:K04751,ko:K04752 ko02020,map02020 - - - ko00000,ko00001 - - - P-II HNDODLHM_01781 411473.RUMCAL_00859 3.03e-218 611.0 COG0004@1|root,COG0004@2|Bacteria,1TQYG@1239|Firmicutes,247W1@186801|Clostridia,3WGAK@541000|Ruminococcaceae 186801|Clostridia U Ammonium Transporter Family amt - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp HNDODLHM_01782 428125.CLOLEP_03967 1.15e-232 656.0 COG1418@1|root,COG1418@2|Bacteria,1TP48@1239|Firmicutes,248G8@186801|Clostridia,3WGE5@541000|Ruminococcaceae 186801|Clostridia D Endoribonuclease that initiates mRNA decay rny - - ko:K18682 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - DUF3552,HD,KH_1 HNDODLHM_01783 1121115.AXVN01000056_gene2502 0.0 1178.0 COG0577@1|root,COG4591@1|root,COG0577@2|Bacteria,COG4591@2|Bacteria,1TQ8P@1239|Firmicutes,25E38@186801|Clostridia,3XZ2P@572511|Blautia 186801|Clostridia MV COG COG0577 ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX HNDODLHM_01784 1235835.C814_02686 6.49e-138 392.0 COG1136@1|root,COG1136@2|Bacteria,1TP6H@1239|Firmicutes,247JJ@186801|Clostridia,3WG7X@541000|Ruminococcaceae 186801|Clostridia V ABC transporter, ATP-binding protein - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran HNDODLHM_01786 411471.SUBVAR_07091 5.22e-48 159.0 COG4474@1|root,COG4474@2|Bacteria,1VIQQ@1239|Firmicutes,24RMX@186801|Clostridia,3WKAU@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - DUF1273 HNDODLHM_01787 1321814.HMPREF9089_00905 7.31e-34 131.0 COG0582@1|root,COG0582@2|Bacteria,1TTJI@1239|Firmicutes,247V6@186801|Clostridia,25X8J@186806|Eubacteriaceae 186801|Clostridia L Phage integrase, N-terminal SAM-like domain - - - - - - - - - - - - Phage_int_SAM_3,Phage_integrase HNDODLHM_01788 457396.CSBG_02209 4.87e-92 283.0 COG1073@1|root,COG1073@2|Bacteria,1TQYU@1239|Firmicutes,249J1@186801|Clostridia,36DMG@31979|Clostridiaceae 186801|Clostridia S Serine aminopeptidase, S33 - - - ko:K06889 - - - - ko00000 - - - DLH,FSH1,Hydrolase_4 HNDODLHM_01789 411463.EUBVEN_01801 4.7e-157 443.0 COG1073@1|root,COG1073@2|Bacteria,1TTD2@1239|Firmicutes,25M90@186801|Clostridia,25Z6C@186806|Eubacteriaceae 186801|Clostridia S Prolyl oligopeptidase family - - - - - - - - - - - - - HNDODLHM_01792 1235793.C809_02295 1.54e-51 190.0 COG3206@1|root,COG3206@2|Bacteria,1TR5K@1239|Firmicutes,24ARC@186801|Clostridia,27K2X@186928|unclassified Lachnospiraceae 186801|Clostridia M Psort location Cytoplasmic, score - - - - - - - - - - - - Mob_Pre HNDODLHM_01793 936596.HMPREF1495_0080 8.61e-163 466.0 COG5527@1|root,COG5527@2|Bacteria 2|Bacteria L Initiator Replication protein - - - - - - - - - - - - Rep_3 HNDODLHM_01797 397287.C807_03443 4.4e-158 459.0 COG0475@1|root,COG0475@2|Bacteria,1TS32@1239|Firmicutes,247XW@186801|Clostridia,27J6N@186928|unclassified Lachnospiraceae 186801|Clostridia P Sodium/hydrogen exchanger family napA - - - - - - - - - - - Na_H_Exchanger HNDODLHM_01798 1226325.HMPREF1548_04369 3.27e-44 151.0 COG1309@1|root,COG1309@2|Bacteria,1V7J5@1239|Firmicutes,24JZZ@186801|Clostridia,36KF2@31979|Clostridiaceae 186801|Clostridia K Psort location Cytoplasmic, score - - - - - - - - - - - - TetR_N HNDODLHM_01799 428125.CLOLEP_00512 1.33e-299 842.0 COG0296@1|root,COG0296@2|Bacteria,1TP4M@1239|Firmicutes,247WH@186801|Clostridia,3WGDM@541000|Ruminococcaceae 186801|Clostridia G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position glgB - 2.4.1.18 ko:K00700 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R02110 - ko00000,ko00001,ko00002,ko01000,ko04147 - CBM48,GH13 - Alpha-amylase,Alpha-amylase_C,CBM_48 HNDODLHM_01800 1232453.BAIF02000102_gene3673 4.78e-35 146.0 2AHKI@1|root,317YB@2|Bacteria,1V965@1239|Firmicutes,24MIW@186801|Clostridia,26BP7@186813|unclassified Clostridiales 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - PMT_2 HNDODLHM_01801 545694.TREPR_3601 5.97e-18 90.1 COG1752@1|root,COG1752@2|Bacteria,2J6JW@203691|Spirochaetes 203691|Spirochaetes M esterase of the alpha-beta hydrolase superfamily - - - ko:K07001 - - - - ko00000 - - - Bac_surface_Ag,Patatin HNDODLHM_01802 698758.AXY_19270 2.93e-40 144.0 28JM5@1|root,2Z9DQ@2|Bacteria,1TS2D@1239|Firmicutes,4HRPU@91061|Bacilli 91061|Bacilli S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_01803 411483.FAEPRAA2165_01602 4.4e-25 94.4 COG4481@1|root,COG4481@2|Bacteria,1VEQ7@1239|Firmicutes,24QKA@186801|Clostridia,3WKJ4@541000|Ruminococcaceae 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - DUF951 HNDODLHM_01804 428125.CLOLEP_03918 2.64e-176 500.0 COG0216@1|root,COG0216@2|Bacteria,1TQ7V@1239|Firmicutes,248CN@186801|Clostridia,3WGA4@541000|Ruminococcaceae 186801|Clostridia J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 HNDODLHM_01805 428125.CLOLEP_03920 1.43e-134 393.0 COG0009@1|root,COG0009@2|Bacteria,1TP1I@1239|Firmicutes,248HS@186801|Clostridia,3WGIY@541000|Ruminococcaceae 186801|Clostridia J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine sua - 2.7.7.87 ko:K07566 - - R10463 RC00745 ko00000,ko01000,ko03009,ko03016 - - - SUA5,Sua5_yciO_yrdC HNDODLHM_01806 1341157.RF007C_09105 5.13e-52 173.0 COG0237@1|root,COG0237@2|Bacteria,1V6FS@1239|Firmicutes,24GFQ@186801|Clostridia,3WJC8@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A coaE - 2.7.1.24 ko:K00859 ko00770,ko01100,map00770,map01100 M00120 R00130 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - CoaE HNDODLHM_01807 1232443.BAIA02000045_gene2213 2.96e-38 135.0 COG0741@1|root,COG0741@2|Bacteria,1V6K4@1239|Firmicutes,24JB5@186801|Clostridia 186801|Clostridia M transglycosylase - - - ko:K08309 - - - - ko00000,ko01000,ko01011 - GH23 - SLT HNDODLHM_01808 428125.CLOLEP_03923 1.32e-228 642.0 COG1362@1|root,COG1362@2|Bacteria,1TP6G@1239|Firmicutes,2486Y@186801|Clostridia,3WHAH@541000|Ruminococcaceae 186801|Clostridia E M18 family aminopeptidase apeA - - - - - - - - - - - Peptidase_M18 HNDODLHM_01810 1203606.HMPREF1526_02883 6.91e-36 125.0 2CCSR@1|root,32RWC@2|Bacteria,1VHG8@1239|Firmicutes,24N36@186801|Clostridia,36K2K@31979|Clostridiaceae 186801|Clostridia S 23S rRNA-intervening sequence protein - - - - - - - - - - - - 23S_rRNA_IVP HNDODLHM_01811 552396.HMPREF0863_01358 1.28e-28 126.0 COG3942@1|root,COG5492@1|root,COG3942@2|Bacteria,COG5492@2|Bacteria,1VFAV@1239|Firmicutes 1239|Firmicutes M CHAP domain - - - - - - - - - - - - Big_2,CHAP,CW_binding_1,GBS_Bsp-like,RicinB_lectin_2 HNDODLHM_01812 1235793.C809_04307 5.69e-84 271.0 COG3290@1|root,COG3290@2|Bacteria,1V0KZ@1239|Firmicutes,25BG0@186801|Clostridia,27TX7@186928|unclassified Lachnospiraceae 186801|Clostridia T GHKL domain - - - - - - - - - - - - HATPase_c_5 HNDODLHM_01813 1458462.JNLK01000001_gene2795 2.12e-43 154.0 COG3279@1|root,COG3279@2|Bacteria,1VA5A@1239|Firmicutes,24DB9@186801|Clostridia,27TB9@186928|unclassified Lachnospiraceae 186801|Clostridia KT LytTr DNA-binding domain - - - - - - - - - - - - LytTR,Response_reg HNDODLHM_01815 1410617.JHXH01000013_gene6 4.46e-111 332.0 COG1052@1|root,COG1052@2|Bacteria,1TPCX@1239|Firmicutes,248UR@186801|Clostridia,3WG9C@541000|Ruminococcaceae 186801|Clostridia CH D-isomer specific 2-hydroxyacid dehydrogenase hprA - 1.1.1.29,1.1.1.399,1.1.1.95 ko:K00018,ko:K00058 ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00020,M00346 R00717,R01388,R01513 RC00031,RC00042 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C HNDODLHM_01816 471875.RUMLAC_01710 8.74e-56 185.0 COG0546@1|root,COG0546@2|Bacteria,1V3MH@1239|Firmicutes,25F06@186801|Clostridia 186801|Clostridia S PFAM Haloacid dehalogenase domain protein hydrolase - - - - - - - - - - - - HAD_2 HNDODLHM_01817 428125.CLOLEP_01772 0.0 1851.0 COG0046@1|root,COG0047@1|root,COG0046@2|Bacteria,COG0047@2|Bacteria,1TPAS@1239|Firmicutes,247W2@186801|Clostridia,3WGRN@541000|Ruminococcaceae 186801|Clostridia F phosphoribosylformylglycinamidine synthase purL - 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C,GATase_5 HNDODLHM_01821 658088.HMPREF0987_00083 5.5e-40 144.0 28RJ8@1|root,2ZDY4@2|Bacteria,1V64R@1239|Firmicutes,25A25@186801|Clostridia,27RQJ@186928|unclassified Lachnospiraceae 186801|Clostridia S Psort location Cytoplasmic, score 8.87 - - - - - - - - - - - - - HNDODLHM_01822 411463.EUBVEN_02379 2.67e-228 630.0 COG0115@1|root,COG0115@2|Bacteria,1TQQI@1239|Firmicutes,2480D@186801|Clostridia,25V2T@186806|Eubacteriaceae 186801|Clostridia E Branched-chain amino acid aminotransferase ilvE - 2.6.1.42,4.1.3.38 ko:K00826,ko:K02619 ko00270,ko00280,ko00290,ko00770,ko00790,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map00790,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R05553,R10991 RC00006,RC00036,RC01843,RC02148 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 HNDODLHM_01823 246199.CUS_4928 1.43e-109 332.0 COG2954@1|root,COG3911@1|root,COG2954@2|Bacteria,COG3911@2|Bacteria,1TQK3@1239|Firmicutes,24FBY@186801|Clostridia,3WJKT@541000|Ruminococcaceae 186801|Clostridia S CYTH - - - - - - - - - - - - AAA_28,CYTH HNDODLHM_01828 1160721.RBI_II00300 1.95e-304 843.0 COG1154@1|root,COG1154@2|Bacteria,1TP37@1239|Firmicutes,247P1@186801|Clostridia,3WH8S@541000|Ruminococcaceae 186801|Clostridia H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs1 - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C HNDODLHM_01829 661087.HMPREF1008_00694 9.95e-63 192.0 COG0599@1|root,COG0599@2|Bacteria 2|Bacteria S peroxiredoxin activity yphJ - 4.1.1.44 ko:K01607 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 - R03470 RC00938 ko00000,ko00001,ko01000 - - - CMD,Cupin_2 HNDODLHM_01832 1121334.KB911069_gene1487 2.1e-87 263.0 COG1394@1|root,COG1394@2|Bacteria,1TQ4P@1239|Firmicutes,24Z7J@186801|Clostridia,3WH3C@541000|Ruminococcaceae 186801|Clostridia C Produces ATP from ADP in the presence of a proton gradient across the membrane atpD - - ko:K02120 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_D HNDODLHM_01833 1120746.CCNL01000013_gene1968 8.62e-278 766.0 COG1156@1|root,COG1156@2|Bacteria 2|Bacteria C Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit atpB - - ko:K02118 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_ab,ATP-synt_ab_N HNDODLHM_01834 428125.CLOLEP_03321 0.0 936.0 COG1155@1|root,COG1155@2|Bacteria,1TPGS@1239|Firmicutes,24882@186801|Clostridia,3WGBK@541000|Ruminococcaceae 186801|Clostridia C Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit ntpA - 3.6.3.14,3.6.3.15 ko:K02117 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002,ko01000 3.A.2.2,3.A.2.3 - - ATP-synt_ab,ATP-synt_ab_N,ATP-synt_ab_Xtn HNDODLHM_01836 428125.CLOLEP_03319 1.88e-49 159.0 COG1436@1|root,COG1436@2|Bacteria,1VEN1@1239|Firmicutes,24K2E@186801|Clostridia,3WJWV@541000|Ruminococcaceae 186801|Clostridia C Archaeal vacuolar-type H -ATPase subunit F - - - ko:K02122 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_F HNDODLHM_01837 428125.CLOLEP_03318 1.35e-26 103.0 COG0636@1|root,COG0636@2|Bacteria,1VF4U@1239|Firmicutes,25CR4@186801|Clostridia,3WJIE@541000|Ruminococcaceae 186801|Clostridia C ATP synthase subunit C ntpK - - ko:K02124 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - ATP-synt_C HNDODLHM_01838 428125.CLOLEP_03317 2.44e-203 592.0 COG1269@1|root,COG1269@2|Bacteria,1TPTE@1239|Firmicutes,249YV@186801|Clostridia,3WHFQ@541000|Ruminococcaceae 186801|Clostridia C Belongs to the V-ATPase 116 kDa subunit family ntpI - - ko:K02123 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - V_ATPase_I HNDODLHM_01839 1120746.CCNL01000013_gene1962 1.81e-82 261.0 COG1527@1|root,COG1527@2|Bacteria 2|Bacteria C subunit (C ntpC - - ko:K02119 ko00190,ko01100,map00190,map01100 M00159 - - ko00000,ko00001,ko00002 3.A.2.2,3.A.2.3 - - vATP-synt_AC39 HNDODLHM_01841 1120746.CCNL01000013_gene1960 1.4e-256 711.0 COG2848@1|root,COG2848@2|Bacteria,2NPVH@2323|unclassified Bacteria 2|Bacteria S Uncharacterised ACR (DUF711) - - - ko:K09157 - - - - ko00000 - - - DUF711 HNDODLHM_01842 428125.CLOLEP_03312 1.54e-33 117.0 COG3830@1|root,COG3830@2|Bacteria,1VENW@1239|Firmicutes,24QNV@186801|Clostridia,3WJVR@541000|Ruminococcaceae 186801|Clostridia T Belongs to the UPF0237 family - - - ko:K07166 - - - - ko00000 - - - ACT_6 HNDODLHM_01843 1105031.HMPREF1141_2653 6.29e-66 213.0 COG1387@1|root,COG1387@2|Bacteria,1TRKS@1239|Firmicutes,249TM@186801|Clostridia,36FRF@31979|Clostridiaceae 186801|Clostridia E Histidinol phosphate phosphatase, HisJ family - - 3.1.3.15 ko:K04486 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03013 RC00017 ko00000,ko00001,ko00002,ko01000 - - - PHP HNDODLHM_01844 1105031.HMPREF1141_2834 9.97e-129 374.0 COG1210@1|root,COG1210@2|Bacteria,1TQ24@1239|Firmicutes,25E5A@186801|Clostridia,36EIH@31979|Clostridiaceae 186801|Clostridia M UTP-glucose-1-phosphate uridylyltransferase galU - 2.7.7.9 ko:K00963 ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130 M00129,M00361,M00362,M00549 R00289 RC00002 ko00000,ko00001,ko00002,ko01000 - - iHN637.CLJU_RS02205 NTP_transferase HNDODLHM_01845 1105031.HMPREF1141_2835 9.68e-54 187.0 2E0TS@1|root,32WBE@2|Bacteria,1VBFI@1239|Firmicutes,24M0A@186801|Clostridia,36NAB@31979|Clostridiaceae 186801|Clostridia S Prokaryotic RING finger family 1 - - - - - - - - - - - - DUF2628,Prok-RING_1,zinc_ribbon_2 HNDODLHM_01846 428125.CLOLEP_00523 8.09e-195 548.0 COG1186@1|root,COG1186@2|Bacteria,1TPSB@1239|Firmicutes,247KU@186801|Clostridia,3WG91@541000|Ruminococcaceae 186801|Clostridia J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA prfB - - ko:K02836 - - - - ko00000,ko03012 - - - PCRF,RF-1 HNDODLHM_01847 428125.CLOLEP_00764 8.68e-208 584.0 COG3635@1|root,COG3635@2|Bacteria,1TQ5S@1239|Firmicutes,248U6@186801|Clostridia,3WH2J@541000|Ruminococcaceae 186801|Clostridia G phosphoglycerate mutase - - 5.4.2.12 ko:K15635 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000 - - - Metalloenzyme,PhosphMutase HNDODLHM_01849 877411.JMMA01000002_gene1279 8.96e-33 115.0 2E3FD@1|root,32YE7@2|Bacteria,1VEE4@1239|Firmicutes,24QJ7@186801|Clostridia,3WKHY@541000|Ruminococcaceae 186801|Clostridia S TSCPD domain - - - - - - - - - - - - TSCPD HNDODLHM_01850 428125.CLOLEP_00529 3.57e-73 238.0 COG3935@1|root,COG3935@2|Bacteria,1TPR5@1239|Firmicutes,248E7@186801|Clostridia,3WJJV@541000|Ruminococcaceae 186801|Clostridia L DnaD domain protein dnaD - - - - - - - - - - - DnaB_2 HNDODLHM_01851 1120746.CCNL01000010_gene1368 9.41e-92 283.0 COG1484@1|root,COG1484@2|Bacteria 2|Bacteria L DNA-dependent DNA replication - - - ko:K02315,ko:K07452 - - - - ko00000,ko01000,ko02048,ko03032 - - - AAA_5,DUF4357,IstB_IS21 HNDODLHM_01855 428125.CLOLEP_01918 4.49e-313 879.0 COG0210@1|root,COG0210@2|Bacteria,1TPSU@1239|Firmicutes,247RM@186801|Clostridia,3WGKX@541000|Ruminococcaceae 186801|Clostridia L ATP-dependent DNA helicase pcrA - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C HNDODLHM_01856 545697.HMPREF0216_02333 6.09e-55 194.0 COG1680@1|root,COG1680@2|Bacteria,1TRR5@1239|Firmicutes,249KP@186801|Clostridia,36H4V@31979|Clostridiaceae 186801|Clostridia V beta-lactamase - - 3.4.16.4 ko:K01286 - - - - ko00000,ko01000 - - - Beta-lactamase,Cu_amine_oxidN1,DUF3471 HNDODLHM_01857 428125.CLOLEP_01917 3.66e-70 225.0 28J28@1|root,2Z8YU@2|Bacteria,1UYKD@1239|Firmicutes,24GNR@186801|Clostridia,3WHPZ@541000|Ruminococcaceae 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01858 1120746.CCNL01000014_gene2193 5.97e-109 337.0 COG1167@1|root,COG1167@2|Bacteria 2|Bacteria K transaminase activity gabR - - ko:K00375 - - - - ko00000,ko03000 - - - Aminotran_1_2,GntR HNDODLHM_01859 428125.CLOLEP_02021 1.64e-218 617.0 COG0771@1|root,COG0771@2|Bacteria,1TQ3P@1239|Firmicutes,248GS@186801|Clostridia,3WG85@541000|Ruminococcaceae 186801|Clostridia M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) murD - 6.3.2.9 ko:K01925 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R02783 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - iHN637.CLJU_RS20420 Mur_ligase_C,Mur_ligase_M HNDODLHM_01860 1120746.CCNL01000017_gene3116 2.59e-94 291.0 COG1363@1|root,COG1363@2|Bacteria 2|Bacteria G aminopeptidase activity - - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - Peptidase_M42 HNDODLHM_01861 1120746.CCNL01000017_gene3115 6.43e-116 346.0 COG1363@1|root,COG1363@2|Bacteria 2|Bacteria G aminopeptidase activity cel - 3.2.1.4 ko:K01179 ko00500,ko01100,map00500,map01100 - R06200,R11307,R11308 - ko00000,ko00001,ko01000 - GH5,GH9 - Peptidase_M42 HNDODLHM_01863 428125.CLOLEP_02025 1.17e-206 582.0 COG4100@1|root,COG4100@2|Bacteria,1TQ88@1239|Firmicutes,247Y4@186801|Clostridia,3WGF6@541000|Ruminococcaceae 186801|Clostridia P Cystathionine beta-lyase family protein involved in aluminum resistance ynbB - - - - - - - - - - - Met_gamma_lyase HNDODLHM_01864 1120746.CCNL01000017_gene3202 8.52e-67 206.0 COG0590@1|root,COG0590@2|Bacteria,2NPM7@2323|unclassified Bacteria 2|Bacteria FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) tadA - 3.5.4.1,3.5.4.33 ko:K01485,ko:K11991 ko00240,ko00330,ko01100,map00240,map00330,map01100 - R00974,R01411,R02922,R10223 RC00074,RC00477,RC00514,RC00809 ko00000,ko00001,ko01000,ko03016 - - - MafB19-deam HNDODLHM_01865 428125.CLOLEP_00048 1.18e-25 110.0 COG1266@1|root,COG1266@2|Bacteria,1VKW2@1239|Firmicutes,24QJG@186801|Clostridia,3WM89@541000|Ruminococcaceae 186801|Clostridia S Psort location CytoplasmicMembrane, score - - - ko:K07052 - - - - ko00000 - - - Abi HNDODLHM_01869 1121334.KB911072_gene2558 2.84e-133 381.0 COG0152@1|root,COG0152@2|Bacteria,1TP11@1239|Firmicutes,2483I@186801|Clostridia,3WGZE@541000|Ruminococcaceae 186801|Clostridia F Belongs to the SAICAR synthetase family purC - 4.3.2.2,6.3.2.6 ko:K01756,ko:K01923 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048,M00049 R01083,R04559,R04591 RC00064,RC00162,RC00379,RC00444,RC00445 ko00000,ko00001,ko00002,ko01000 - - - SAICAR_synt HNDODLHM_01870 428125.CLOLEP_03229 1.1e-248 694.0 COG0034@1|root,COG0034@2|Bacteria,1TPH3@1239|Firmicutes,247RF@186801|Clostridia,3WH6T@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_6,GATase_7,Pribosyltran HNDODLHM_01871 428125.CLOLEP_03228 6.6e-279 770.0 COG0015@1|root,COG0015@2|Bacteria,1TPMM@1239|Firmicutes,2485N@186801|Clostridia,3WG9P@541000|Ruminococcaceae 186801|Clostridia F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily purB - 4.3.2.2 ko:K01756 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048,M00049 R01083,R04559 RC00379,RC00444,RC00445 ko00000,ko00001,ko00002,ko01000 - - - ADSL_C,Lyase_1 HNDODLHM_01872 428125.CLOLEP_03227 2.94e-259 716.0 COG0104@1|root,COG0104@2|Bacteria,1TQ4C@1239|Firmicutes,247RN@186801|Clostridia,3WGUF@541000|Ruminococcaceae 186801|Clostridia F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA - 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt HNDODLHM_01873 641112.ACOK01000001_gene3581 3.12e-279 775.0 COG0519@1|root,COG0519@2|Bacteria,1TPG8@1239|Firmicutes,2487F@186801|Clostridia,3WGXK@541000|Ruminococcaceae 186801|Clostridia F Catalyzes the synthesis of GMP from XMP guaA - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase,GMP_synt_C,NAD_synthase,tRNA_Me_trans HNDODLHM_01875 428125.CLOLEP_03224 1.75e-75 230.0 COG1396@1|root,COG1396@2|Bacteria,1V1JY@1239|Firmicutes,24R5G@186801|Clostridia,3WRJ3@541000|Ruminococcaceae 186801|Clostridia K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_3 HNDODLHM_01876 411467.BACCAP_00949 1.31e-21 85.9 2E5UB@1|root,330IM@2|Bacteria,1VFEC@1239|Firmicutes,24R3P@186801|Clostridia,26BW6@186813|unclassified Clostridiales 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_01877 411467.BACCAP_00950 5.76e-206 575.0 COG0582@1|root,COG0582@2|Bacteria,1TTJI@1239|Firmicutes,247V6@186801|Clostridia,2689P@186813|unclassified Clostridiales 186801|Clostridia L Site-specific recombinase, phage integrase family - - - - - - - - - - - - Arm-DNA-bind_4,Phage_int_SAM_3,Phage_integrase HNDODLHM_01878 411460.RUMTOR_02161 7.35e-42 140.0 2AQJ5@1|root,31FRY@2|Bacteria,1V6TG@1239|Firmicutes,25MZ5@186801|Clostridia,3Y0P8@572511|Blautia 186801|Clostridia S Psort location Cytoplasmic, score - - - - - - - - - - - - - HNDODLHM_01879 428125.CLOLEP_03220 6.69e-213 597.0 COG3598@1|root,COG3598@2|Bacteria,1TU5N@1239|Firmicutes,247KK@186801|Clostridia,3WSPN@541000|Ruminococcaceae 186801|Clostridia L AAA domain - - - - - - - - - - - - AAA_25,PriCT_1,Prim-Pol HNDODLHM_01880 699218.HMPREF0889_0782 1.98e-23 99.4 2C9V3@1|root,2ZBBS@2|Bacteria,1V198@1239|Firmicutes 1239|Firmicutes S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - - HNDODLHM_01881 1121115.AXVN01000013_gene3196 1.18e-86 255.0 2C2YH@1|root,2ZBKZ@2|Bacteria,1V3N8@1239|Firmicutes,24FYJ@186801|Clostridia,3Y082@572511|Blautia 186801|Clostridia S Bacterial mobilisation protein (MobC) - - - - - - - - - - - - MobC HNDODLHM_01882 411902.CLOBOL_04284 9.28e-108 311.0 2EWMS@1|root,30FQV@2|Bacteria,1UEFU@1239|Firmicutes,25JCN@186801|Clostridia,2223E@1506553|Lachnoclostridium 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01883 1121115.AXVN01000013_gene3197 9.71e-74 220.0 2F2W4@1|root,33VRY@2|Bacteria,1VW1H@1239|Firmicutes,250T7@186801|Clostridia 186801|Clostridia - - - - - - - - - - - - - - - HNDODLHM_01884 411459.RUMOBE_00642 5.14e-21 83.2 2CDEH@1|root,32RXK@2|Bacteria,1VA17@1239|Firmicutes,24MPR@186801|Clostridia,3Y0UR@572511|Blautia 186801|Clostridia S Maff2 family - - - - - - - - - - - - Maff2 HNDODLHM_01885 411459.RUMOBE_00643 1.28e-170 476.0 COG3505@1|root,COG3505@2|Bacteria,1TPCF@1239|Firmicutes,2489C@186801|Clostridia,3XYP3@572511|Blautia 186801|Clostridia U COG COG3505 Type IV secretory pathway, VirD4 components - - - ko:K03205 ko03070,map03070 M00333 - - ko00000,ko00001,ko00002,ko02044 3.A.7 - - T4SS-DNA_transf,TraG-D_C ## 1586 queries scanned ## Total time (seconds): 769.46697473526 ## Rate: 2.06 q/s