GCA_008868445.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaOFFBOPIM_1 (original name was: gnl|Prokka|OFFBOPIM_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	256,570	266,962

gnlProkkaOFFBOPIM_4 (original name was: gnl|Prokka|OFFBOPIM_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	lanthipeptide-class-i	20,391	44,384

gnlProkkaOFFBOPIM_12 (original name was: gnl|Prokka|OFFBOPIM_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RiPP-like	430,622	441,029

gnlProkkaOFFBOPIM_28 (original name was: gnl|Prokka|OFFBOPIM_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	NRPS-like	51,191	93,500	nosiheptide	RiPP:Thiopeptide	7%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	256,570	266,962
Region 4.1	lanthipeptide-class-i	20,391	44,384
Region 12.1	RiPP-like	430,622	441,029
Region 22.1	NRPS-like	51,191	93,500	nosiheptide	RiPP:Thiopeptide	7%

No secondary metabolite regions were found in these records:: gnlProkkaOFFBOPIM_2 (original name was: gnl|Prokka|OFFBOPIM_2); gnlProkkaOFFBOPIM_3 (original name was: gnl|Prokka|OFFBOPIM_3); gnlProkkaOFFBOPIM_5 (original name was: gnl|Prokka|OFFBOPIM_5); gnlProkkaOFFBOPIM_6 (original name was: gnl|Prokka|OFFBOPIM_6); gnlProkkaOFFBOPIM_7 (original name was: gnl|Prokka|OFFBOPIM_7); gnlProkkaOFFBOPIM_8 (original name was: gnl|Prokka|OFFBOPIM_8); gnlProkkaOFFBOPIM_9 (original name was: gnl|Prokka|OFFBOPIM_9); gnlProkkaOFFBOPIM_10 (original name was: gnl|Prokka|OFFBOPIM_10); gnlProkkaOFFBOPIM_11 (original name was: gnl|Prokka|OFFBOPIM_11); gnlProkkaOFFBOPIM_13 (original name was: gnl|Prokka|OFFBOPIM_13); gnlProkkaOFFBOPIM_14 (original name was: gnl|Prokka|OFFBOPIM_14); gnlProkkaOFFBOPIM_15 (original name was: gnl|Prokka|OFFBOPIM_15); gnlProkkaOFFBOPIM_16 (original name was: gnl|Prokka|OFFBOPIM_16); gnlProkkaOFFBOPIM_23 (original name was: gnl|Prokka|OFFBOPIM_23); gnlProkkaOFFBOPIM_24 (original name was: gnl|Prokka|OFFBOPIM_24); gnlProkkaOFFBOPIM_25 (original name was: gnl|Prokka|OFFBOPIM_25); gnlProkkaOFFBOPIM_26 (original name was: gnl|Prokka|OFFBOPIM_26); gnlProkkaOFFBOPIM_27 (original name was: gnl|Prokka|OFFBOPIM_27); gnlProkkaOFFBOPIM_29 (original name was: gnl|Prokka|OFFBOPIM_29)

Compact view

gnlProkkaOFFBOPIM_1 - Region 1 - RiPP-like

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Location: 256,570 - 266,962 nt. (total: 10,393 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOFFBOPIM_4 - Region 1 - lanthipeptide-class-i

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Location: 20,391 - 44,384 nt. (total: 23,994 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

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transport-related genes

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resistance

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KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaOFFBOPIM_12 - Region 1 - RiPP-like

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Location: 430,622 - 441,029 nt. (total: 10,408 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaOFFBOPIM_28 - Region 1 - NRPS-like

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Location: 51,191 - 93,500 nt. (total: 42,310 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg22_50

AMP-binding (14..217): X

nrpys: (unknown)

SVM prediction details:

NOTE: uncertain match

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFF------K
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)