GCA_009019355.1 - 8 region(s)

Identified primary metabolite regions

c00011_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	PFOR_II_pathway	SCFA	50,622	74,179	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00056_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_56)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	Pyruvate2acetate-formate	SCFA	283,971	306,926	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00067_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_67)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	NADH_dehydrogenase_I	E-MGC	141,568	171,813	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00071_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_71)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	porA	SCFA	19,154	41,997	porA C. sporogenes	POR	80%

c00089_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_89)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 89.1	TPP_AA_metabolism	Putative	59,982	86,063

c00111_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_111)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 111.1	Fumarate2succinate	SCFA	65,741	89,211	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00133_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_133)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 133.1	Rnf_complex	E-MGC	84,173	109,407	Rnf complex C. sporogenes	RNF	83%

c00144_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_144)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 144.1	succinate2propionate	SCFA	58,553	83,261	Succinate to propionate B. theta	PRO	75%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_1); c00002_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_2); c00003_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_3); c00004_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_4); c00005_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_5); c00006_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_6); c00007_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_7); c00008_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_8); c00009_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_9); c00010_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_10); c00012_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_12); c00013_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_13); c00014_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_14); c00015_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_15); c00016_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_16); c00017_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_17); c00018_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_18); c00019_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_19); c00020_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_20); c00021_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_21); c00022_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_22); c00023_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_23); c00024_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_24); c00025_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_25); c00026_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_26); c00027_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_27); c00028_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_28); c00029_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_29); c00030_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_30); c00031_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_31); c00032_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_32); c00033_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_33); c00034_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_34); c00035_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_35); c00036_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_36); c00037_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_37); c00038_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_38); c00039_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_39); c00040_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_40); c00041_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_41); c00042_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_42); c00043_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_43); c00044_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_44); c00045_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_45); c00046_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_46); c00047_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_47); c00048_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_48); c00049_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_49); c00050_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_50); c00051_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_51); c00052_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_52); c00053_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_53); c00054_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_54); c00055_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_55); c00057_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_57); c00058_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_58); c00059_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_59); c00060_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_60); c00061_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_61); c00062_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_62); c00063_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_63); c00064_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_64); c00065_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_65); c00066_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_66); c00068_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_68); c00069_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_69); c00070_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_70); c00072_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_72); c00073_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_73); c00074_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_74); c00075_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_75); c00076_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_76); c00077_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_77); c00078_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_78); c00079_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_79); c00080_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_80); c00081_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_81); c00082_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_82); c00083_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_83); c00084_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_84); c00085_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_85); c00086_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_86); c00087_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_87); c00088_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_88); c00090_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_90); c00091_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_91); c00092_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_92); c00093_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_93); c00094_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_94); c00095_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_95); c00096_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_96); c00097_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_97); c00098_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_98); c00099_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_99); c00100_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_100); c00101_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_101); c00102_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_102); c00103_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_103); c00104_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_104); c00105_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_105); c00106_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_106); c00107_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_107); c00108_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_108); c00109_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_109); c00110_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_110); c00112_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_112); c00113_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_113); c00114_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_114); c00115_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_115); c00116_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_116); c00117_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_117); c00118_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_118); c00119_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_119); c00120_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_120); c00121_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_121); c00122_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_122); c00123_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_123); c00124_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_124); c00125_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_125); c00126_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_126); c00127_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_127); c00128_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_128); c00129_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_129); c00130_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_130); c00131_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_131); c00132_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_132); c00134_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_134); c00135_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_135); c00136_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_136); c00137_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_137); c00138_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_138); c00139_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_139); c00140_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_140); c00141_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_141); c00142_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_142); c00143_gnlPro.. (original name was: gnl|Prokka|OBDADIFO_143)

Compact view

c00011_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 50,622 - 74,179 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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c00056_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 283,971 - 306,926 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00067_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 141,568 - 171,813 nt. (total: 30,246 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00071_gnlPro.. - Region 1 - porA

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Location: 19,154 - 41,997 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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c00089_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 59,982 - 86,063 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00111_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 65,741 - 89,211 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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c00133_gnlPro.. - Region 1 - Rnf_complex

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Location: 84,173 - 109,407 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00144_gnlPro.. - Region 1 - succinate2propionate

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Location: 58,553 - 83,261 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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