GCA_009020275.1 - 8 region(s)

Identified primary metabolite regions

c00031_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_31)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Fumarate2succinate	SCFA	150,118	173,588	Fumarate to succinate B. thetaiotaomicron	SUC	100%
Region 31.2	NADH_dehydrogenase_I	E-MGC	399,043	429,274	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00041_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	Pyruvate2acetate-formate,GR_fatty_acids	Putative	1	27,834	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00055_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	PFOR_II_pathway	SCFA	51,182	74,739	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 55.2	succinate2propionate	SCFA	268,960	293,668	Succinate to propionate B. theta	PRO	75%
Region 55.3	porA	SCFA	369,355	392,198	porA C. sporogenes	POR	80%

c00076_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_76)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 76.1	TPP_AA_metabolism	Putative	66,352	92,433

c00165_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_165)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 165.1	Rnf_complex	E-MGC	78,130	103,364	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_1); c00002_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_2); c00003_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_3); c00004_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_4); c00005_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_5); c00006_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_6); c00007_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_7); c00008_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_8); c00009_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_9); c00010_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_10); c00011_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_11); c00012_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_12); c00013_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_13); c00014_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_14); c00015_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_15); c00016_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_16); c00017_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_17); c00018_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_18); c00019_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_19); c00020_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_20); c00021_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_21); c00022_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_22); c00023_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_23); c00024_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_24); c00025_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_25); c00026_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_26); c00027_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_27); c00028_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_28); c00029_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_29); c00030_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_30); c00032_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_32); c00033_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_33); c00034_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_34); c00035_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_35); c00036_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_36); c00037_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_37); c00038_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_38); c00039_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_39); c00040_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_40); c00042_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_42); c00043_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_43); c00044_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_44); c00045_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_45); c00046_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_46); c00047_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_47); c00048_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_48); c00049_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_49); c00050_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_50); c00051_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_51); c00052_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_52); c00053_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_53); c00054_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_54); c00056_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_56); c00057_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_57); c00058_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_58); c00059_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_59); c00060_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_60); c00061_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_61); c00062_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_62); c00063_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_63); c00064_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_64); c00065_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_65); c00066_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_66); c00067_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_67); c00068_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_68); c00069_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_69); c00070_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_70); c00071_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_71); c00072_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_72); c00073_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_73); c00074_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_74); c00075_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_75); c00077_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_77); c00078_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_78); c00079_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_79); c00080_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_80); c00081_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_81); c00082_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_82); c00083_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_83); c00084_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_84); c00085_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_85); c00086_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_86); c00087_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_87); c00088_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_88); c00089_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_89); c00090_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_90); c00091_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_91); c00092_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_92); c00093_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_93); c00094_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_94); c00095_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_95); c00096_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_96); c00097_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_97); c00098_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_98); c00099_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_99); c00100_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_100); c00101_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_101); c00102_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_102); c00103_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_103); c00104_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_104); c00105_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_105); c00106_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_106); c00107_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_107); c00108_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_108); c00109_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_109); c00110_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_110); c00111_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_111); c00112_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_112); c00113_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_113); c00114_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_114); c00115_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_115); c00116_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_116); c00117_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_117); c00118_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_118); c00119_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_119); c00120_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_120); c00121_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_121); c00122_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_122); c00123_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_123); c00124_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_124); c00125_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_125); c00126_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_126); c00127_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_127); c00128_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_128); c00129_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_129); c00130_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_130); c00131_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_131); c00132_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_132); c00133_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_133); c00134_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_134); c00135_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_135); c00136_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_136); c00137_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_137); c00138_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_138); c00139_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_139); c00140_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_140); c00141_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_141); c00142_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_142); c00143_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_143); c00144_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_144); c00145_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_145); c00146_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_146); c00147_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_147); c00148_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_148); c00149_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_149); c00150_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_150); c00151_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_151); c00152_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_152); c00153_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_153); c00154_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_154); c00155_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_155); c00156_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_156); c00157_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_157); c00158_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_158); c00159_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_159); c00160_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_160); c00161_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_161); c00162_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_162); c00163_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_163); c00164_gnlPro.. (original name was: gnl|Prokka|EHCKGBHM_164)

Compact view

c00031_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 150,118 - 173,588 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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c00031_gnlPro.. - Region 2 - NADH_dehydrogenase_I

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Location: 399,043 - 429,274 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00041_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 1 - 27,834 nt. (total: 27,834 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))

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c00055_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 51,182 - 74,739 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00055_gnlPro.. - Region 2 - succinate2propionate

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Location: 268,960 - 293,668 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00055_gnlPro.. - Region 3 - porA

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Location: 369,355 - 392,198 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00076_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 66,352 - 92,433 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00165_gnlPro.. - Region 1 - Rnf_complex

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Location: 78,130 - 103,364 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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