GCA_009020315.1 - 8 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	1,971	27,205	Rnf complex C. sporogenes	RNF	83%

c00011_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	351,568	377,649

c00012_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	GR_fatty_acids	Putative	1	29,421

c00022_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	PFOR_II_pathway	SCFA	51,182	74,739	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 22.2	succinate2propionate	SCFA	268,982	293,690	Succinate to propionate B. theta	PRO	75%
Region 22.3	porA	SCFA	369,377	392,220	porA C. sporogenes	POR	80%

c00033_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_33)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Fumarate2succinate	SCFA	486,150	509,620	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00071_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_71)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	NADH_dehydrogenase_I	E-MGC	11,255	41,486	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_1); c00002_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_2); c00003_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_3); c00005_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_5); c00006_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_6); c00007_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_7); c00008_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_8); c00009_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_9); c00010_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_10); c00013_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_13); c00014_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_14); c00015_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_15); c00016_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_16); c00017_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_17); c00018_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_18); c00019_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_19); c00020_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_20); c00021_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_21); c00023_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_23); c00024_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_24); c00025_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_25); c00026_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_26); c00027_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_27); c00028_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_28); c00029_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_29); c00030_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_30); c00031_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_31); c00032_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_32); c00034_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_34); c00035_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_35); c00036_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_36); c00037_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_37); c00038_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_38); c00039_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_39); c00040_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_40); c00041_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_41); c00042_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_42); c00043_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_43); c00044_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_44); c00045_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_45); c00046_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_46); c00047_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_47); c00048_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_48); c00049_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_49); c00050_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_50); c00051_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_51); c00052_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_52); c00053_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_53); c00054_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_54); c00055_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_55); c00056_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_56); c00057_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_57); c00058_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_58); c00059_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_59); c00060_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_60); c00061_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_61); c00062_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_62); c00063_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_63); c00064_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_64); c00065_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_65); c00066_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_66); c00067_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_67); c00068_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_68); c00069_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_69); c00070_gnlPro.. (original name was: gnl|Prokka|LLIHOBAM_70)

Compact view

c00004_gnlPro.. - Region 1 - Rnf_complex

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Location: 1,971 - 27,205 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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transport-related genes

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c00011_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 351,568 - 377,649 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00012_gnlPro.. - Region 1 - GR_fatty_acids

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Location: 1 - 29,421 nt. (total: 29,421 nt) Show pHMM detection rules used

Region on contig edge.

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

c00022_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 51,182 - 74,739 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00022_gnlPro.. - Region 2 - succinate2propionate

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Location: 268,982 - 293,690 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00022_gnlPro.. - Region 3 - porA

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Location: 369,377 - 392,220 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00033_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 486,150 - 509,620 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00071_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 11,255 - 41,486 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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