GCA_009020405.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	87,032	110,503	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00018_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	TPP_AA_metabolism	Putative	19,957	46,038

c00023_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Pyruvate2acetate-formate	SCFA	254,753	277,708	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00034_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_34)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	PFOR_II_pathway	SCFA	1	21,880	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 34.2	NADH_dehydrogenase_I	E-MGC	332,429	362,660	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00045_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_45)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	succinate2propionate	SCFA	171,089	195,797	Succinate to propionate B. theta	PRO	75%
Region 45.2	porA	SCFA	267,513	290,356	porA C. sporogenes	POR	80%

c00085_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_85)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 85.1	Rnf_complex	E-MGC	65,139	90,373	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_2); c00003_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_3); c00004_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_4); c00005_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_5); c00006_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_6); c00007_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_7); c00008_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_8); c00009_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_9); c00010_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_10); c00011_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_11); c00012_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_12); c00013_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_13); c00014_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_14); c00015_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_15); c00016_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_16); c00017_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_17); c00019_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_19); c00020_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_20); c00021_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_21); c00022_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_22); c00024_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_24); c00025_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_25); c00026_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_26); c00027_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_27); c00028_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_28); c00029_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_29); c00030_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_30); c00031_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_31); c00032_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_32); c00033_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_33); c00035_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_35); c00036_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_36); c00037_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_37); c00038_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_38); c00039_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_39); c00040_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_40); c00041_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_41); c00042_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_42); c00043_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_43); c00044_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_44); c00046_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_46); c00047_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_47); c00048_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_48); c00049_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_49); c00050_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_50); c00051_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_51); c00052_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_52); c00053_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_53); c00054_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_54); c00055_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_55); c00056_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_56); c00057_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_57); c00058_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_58); c00059_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_59); c00060_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_60); c00061_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_61); c00062_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_62); c00063_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_63); c00064_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_64); c00065_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_65); c00066_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_66); c00067_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_67); c00068_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_68); c00069_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_69); c00070_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_70); c00071_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_71); c00072_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_72); c00073_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_73); c00074_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_74); c00075_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_75); c00076_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_76); c00077_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_77); c00078_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_78); c00079_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_79); c00080_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_80); c00081_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_81); c00082_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_82); c00083_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_83); c00084_gnlPro.. (original name was: gnl|Prokka|OIHBJNED_84)

Compact view

c00001_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 87,032 - 110,503 nt. (total: 23,472 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00018_gnlPro.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 19,957 - 46,038 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00023_gnlPro.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 254,753 - 277,708 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00034_gnlPro.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 1 - 21,880 nt. (total: 21,880 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00034_gnlPro.. - Region 2 - NADH_dehydrogenase_I

Download region GenBank file

Location: 332,429 - 362,660 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00045_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 171,089 - 195,797 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00045_gnlPro.. - Region 2 - porA

Download region GenBank file

Location: 267,513 - 290,356 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00085_gnlPro.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 65,139 - 90,373 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters