GCA_009102225.1 - 9 region(s)

Identified primary metabolite regions

c00022_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	PFOR_II_pathway	SCFA	91,310	109,891	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00055_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	porA	SCFA	356	23,198	porA C. sporogenes	POR	60%

c00077_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_77)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	TPP_AA_metabolism	Putative	4,110	30,203

c00109_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_109)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 109.1	Rnf_complex	E-MGC	1	16,743	Rnf complex C. sporogenes	RNF	83%

c00111_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_111)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 111.1	TPP_fatty_acids	Putative	26,123	50,982

c00128_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_128)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 128.1	fatty_acids-unassigned	Putative	168	30,818

c00142_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_142)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 142.1	succinate2propionate	SCFA	6,108	30,664	Succinate to propionate B. theta	PRO	75%

c00175_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_175)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 175.1	Pyruvate2acetate-formate	SCFA	7,981	25,027	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00189_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_189)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 189.1	Fumarate2succinate	SCFA	6,675	20,503	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_1); c00002_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_2); c00003_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_3); c00004_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_4); c00005_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_5); c00006_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_6); c00007_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_7); c00008_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_8); c00009_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_9); c00010_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_10); c00011_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_11); c00012_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_12); c00013_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_13); c00014_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_14); c00015_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_15); c00016_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_16); c00017_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_17); c00018_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_18); c00019_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_19); c00020_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_20); c00021_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_21); c00023_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_23); c00024_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_24); c00025_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_25); c00026_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_26); c00027_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_27); c00028_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_28); c00029_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_29); c00030_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_30); c00031_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_31); c00032_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_32); c00033_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_33); c00034_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_34); c00035_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_35); c00036_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_36); c00037_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_37); c00038_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_38); c00039_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_39); c00040_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_40); c00041_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_41); c00042_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_42); c00043_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_43); c00044_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_44); c00045_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_45); c00046_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_46); c00047_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_47); c00048_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_48); c00049_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_49); c00050_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_50); c00051_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_51); c00052_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_52); c00053_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_53); c00054_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_54); c00056_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_56); c00057_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_57); c00058_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_58); c00059_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_59); c00060_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_60); c00061_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_61); c00062_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_62); c00063_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_63); c00064_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_64); c00065_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_65); c00066_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_66); c00067_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_67); c00068_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_68); c00069_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_69); c00070_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_70); c00071_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_71); c00072_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_72); c00073_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_73); c00074_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_74); c00075_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_75); c00076_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_76); c00078_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_78); c00079_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_79); c00080_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_80); c00081_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_81); c00082_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_82); c00083_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_83); c00084_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_84); c00085_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_85); c00086_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_86); c00087_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_87); c00088_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_88); c00089_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_89); c00090_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_90); c00091_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_91); c00092_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_92); c00093_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_93); c00094_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_94); c00095_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_95); c00096_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_96); c00097_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_97); c00098_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_98); c00099_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_99); c00100_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_100); c00101_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_101); c00102_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_102); c00103_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_103); c00104_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_104); c00105_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_105); c00106_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_106); c00107_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_107); c00108_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_108); c00110_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_110); c00112_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_112); c00113_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_113); c00114_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_114); c00115_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_115); c00116_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_116); c00117_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_117); c00118_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_118); c00119_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_119); c00120_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_120); c00121_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_121); c00122_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_122); c00123_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_123); c00124_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_124); c00125_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_125); c00126_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_126); c00127_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_127); c00129_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_129); c00130_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_130); c00131_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_131); c00132_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_132); c00133_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_133); c00134_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_134); c00135_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_135); c00136_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_136); c00137_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_137); c00138_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_138); c00139_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_139); c00140_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_140); c00141_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_141); c00143_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_143); c00144_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_144); c00145_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_145); c00146_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_146); c00147_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_147); c00148_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_148); c00149_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_149); c00150_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_150); c00151_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_151); c00152_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_152); c00153_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_153); c00154_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_154); c00155_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_155); c00156_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_156); c00157_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_157); c00158_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_158); c00159_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_159); c00160_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_160); c00161_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_161); c00162_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_162); c00163_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_163); c00164_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_164); c00165_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_165); c00166_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_166); c00167_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_167); c00168_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_168); c00169_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_169); c00170_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_170); c00171_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_171); c00172_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_172); c00173_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_173); c00174_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_174); c00176_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_176); c00177_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_177); c00178_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_178); c00179_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_179); c00180_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_180); c00181_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_181); c00182_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_182); c00183_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_183); c00184_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_184); c00185_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_185); c00186_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_186); c00187_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_187); c00188_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_188); c00190_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_190); c00191_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_191); c00192_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_192); c00193_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_193); c00194_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_194); c00195_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_195); c00196_gnlPro.. (original name was: gnl|Prokka|PBDDACGI_196)

Compact view

c00022_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 91,310 - 109,891 nt. (total: 18,582 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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transport-related genes

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c00055_gnlPro.. - Region 1 - porA

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Location: 356 - 23,198 nt. (total: 22,843 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00077_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 4,110 - 30,203 nt. (total: 26,094 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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No matches found.

c00109_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 16,743 nt. (total: 16,743 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00111_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 26,123 - 50,982 nt. (total: 24,860 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00128_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 168 - 30,818 nt. (total: 30,651 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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transport-related genes

regulatory genes

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c00142_gnlPro.. - Region 1 - succinate2propionate

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Location: 6,108 - 30,664 nt. (total: 24,557 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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resistance genes

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c00175_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 7,981 - 25,027 nt. (total: 17,047 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00189_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 6,675 - 20,503 nt. (total: 13,829 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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