GCA_009102805.1 - 9 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Rnf_complex	E-MGC	92,415	117,632	Rnf complex C. sporogenes	RNF	83%

c00004_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	fatty_acids-unassigned	Putative	65,550	96,276

c00018_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Pyruvate2acetate-formate	SCFA	36,389	59,361	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00023_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	succinate2propionate	SCFA	37,095	61,651	Succinate to propionate B. theta	PRO	75%

c00024_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Fumarate2succinate	SCFA	6,302	29,815	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00029_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	TPP_fatty_acids	Putative	23,375	48,234

c00035_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	TPP_AA_metabolism	Putative	55,456	81,542

c00046_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	NADH_dehydrogenase_I	E-MGC	212,709	242,909	NADH dehydrogenase I Bacteroides sp.	NADHD	61%

c00068_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_68)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	porA	SCFA	244,044	266,886	porA C. sporogenes	POR	60%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_1); c00003_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_3); c00005_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_5); c00006_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_6); c00007_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_7); c00008_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_8); c00009_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_9); c00010_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_10); c00011_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_11); c00012_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_12); c00013_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_13); c00014_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_14); c00015_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_15); c00016_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_16); c00017_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_17); c00019_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_19); c00020_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_20); c00021_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_21); c00022_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_22); c00025_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_25); c00026_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_26); c00027_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_27); c00028_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_28); c00030_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_30); c00031_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_31); c00032_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_32); c00033_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_33); c00034_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_34); c00036_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_36); c00037_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_37); c00038_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_38); c00039_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_39); c00040_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_40); c00041_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_41); c00042_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_42); c00043_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_43); c00044_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_44); c00045_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_45); c00047_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_47); c00048_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_48); c00049_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_49); c00050_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_50); c00051_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_51); c00052_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_52); c00053_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_53); c00054_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_54); c00055_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_55); c00056_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_56); c00057_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_57); c00058_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_58); c00059_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_59); c00060_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_60); c00061_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_61); c00062_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_62); c00063_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_63); c00064_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_64); c00065_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_65); c00066_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_66); c00067_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_67); c00069_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_69); c00070_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_70); c00071_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_71); c00072_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_72); c00073_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_73); c00074_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_74); c00075_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_75); c00076_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_76); c00077_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_77); c00078_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_78); c00079_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_79); c00080_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_80); c00081_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_81); c00082_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_82); c00083_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_83); c00084_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_84); c00085_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_85); c00086_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_86); c00087_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_87); c00088_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_88); c00089_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_89); c00090_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_90); c00091_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_91); c00092_gnlPro.. (original name was: gnl|Prokka|FMJJFIOC_92)

Compact view

c00002_gnlPro.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 92,415 - 117,632 nt. (total: 25,218 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00004_gnlPro.. - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 65,550 - 96,276 nt. (total: 30,727 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00018_gnlPro.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 36,389 - 59,361 nt. (total: 22,973 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00023_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 37,095 - 61,651 nt. (total: 24,557 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00024_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 6,302 - 29,815 nt. (total: 23,514 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00029_gnlPro.. - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 23,375 - 48,234 nt. (total: 24,860 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00035_gnlPro.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 55,456 - 81,542 nt. (total: 26,087 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00046_gnlPro.. - Region 1 - NADH_dehydrogenase_I

Download region GenBank file

Location: 212,709 - 242,909 nt. (total: 30,201 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00068_gnlPro.. - Region 1 - porA

Download region GenBank file

Location: 244,044 - 266,886 nt. (total: 22,843 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters