Rank	Genome ID	Species	Strain	BioSample ID	Date	Location	Host	Allelic distance	ARGs	VFs	PGs	PPRS
1	GCA_009389435.1	Limosilactobacillus reuteri	PTA1_C3	SAMN09280108	2017	Switzerland	chicken	0	0	0	1	1.00
2	GCA_009389115.1	Limosilactobacillus reuteri	PTA6_C2	SAMN09280123	2017	Switzerland	chicken	327	1	0	1	1.41
3	GCA_009389005.1	Limosilactobacillus reuteri	PTA6_F8	SAMN09280129	2017	Switzerland	chicken	328	1	0	1	1.41
4	GCA_009389365.1	Limosilactobacillus reuteri	PTA1_F3	SAMN09280110	2017	Switzerland	chicken	359	0	0	1	1.00
5	GCA_009389425.1	Limosilactobacillus reuteri	PTA1_C1	SAMN09280107	2017	Switzerland	chicken	384	0	0	1	1.00
6	GCA_020785715.1	Limosilactobacillus reuteri	tu160	SAMN22258592	1990	Sweden	turkey	417	0	0	1	1.00
7	GCA_009389035.1	Limosilactobacillus reuteri	PTA6_F2	SAMN09280126	2017	Switzerland	chicken	446	0	0	1	1.00
8	GCA_009389015.1	Limosilactobacillus reuteri	PTA6_F1	SAMN09280125	2017	Switzerland	chicken	479	1	0	1	1.41
9	GCA_009389245.1	Limosilactobacillus reuteri	PTA5_F1	SAMN09280115	2017	Switzerland	chicken	479	0	0	1	1.00
10	GCA_009389205.1	Limosilactobacillus reuteri	PTA5_C4	SAMN09280119	2017	Switzerland	chicken	495	0	0	1	1.00
11	GCA_009389255.1	Limosilactobacillus reuteri	PTA5_F11	SAMN09280117	2017	Switzerland	chicken	500	0	0	1	1.00
12	GCA_009389335.1	Limosilactobacillus reuteri	PTA4_C1	SAMN09280112	2017	Switzerland	chicken	503	0	0	1	1.00
13	GCA_009389285.1	Limosilactobacillus reuteri	PTA5_F4	SAMN09280116	2017	Switzerland	chicken	509	2	0	1	2.24
14	GCA_003064585.1	Limosilactobacillus reuteri	DS22_10	SAMN06464108	2016-12-16	USA:MD	Homo sapiens	513	1	0	1	1.41
15	GCA_003065345.1	Limosilactobacillus reuteri	DS17_10	SAMN05942022	2016-10-07	USA:MD	Homo sapiens	513	1	0	1	1.41
16	GCA_030585585.1	Limosilactobacillus reuteri	NL02	SAMN21843240	2019-10-10	China: hohhot	Homo sapiens	513	1	0	0	1.00
17	GCA_035200785.1	Limosilactobacillus reuteri	C501	SAMN35104363	2021-06-13	China: Guangdong	Homo sapiens	513	2	0	0	2.00
18	GCA_002762415.1	Limosilactobacillus reuteri	RC-14	SAMN07981098	2017-05	India: Pune	-	514	1	0	1	1.41
19	GCA_020978225.1	Limosilactobacillus reuteri	-	SAMN16712075	2013-01-01	Germany: Cuxhaven	-	525	1	0	0	1.00
20	GCA_009389165.1	Limosilactobacillus reuteri	PTA5_C13	SAMN09280122	2017	Switzerland	chicken	527	1	0	1	1.41
21	GCA_020978285.1	Limosilactobacillus reuteri	-	SAMN16712076	2013-01-01	Germany: Cuxhaven	-	530	1	0	0	1.00
22	GCA_002159305.1	Limosilactobacillus reuteri	An71	SAMN06473750	2016	-	Gallus gallus	531	1	0	1	1.41
23	GCA_002160565.1	Limosilactobacillus reuteri	An166	SAMN06473632	2016	-	Gallus gallus	531	1	0	1	1.41
24	GCA_016900715.1	Limosilactobacillus reuteri	An769	SAMN14913601	2018	-	Gallus gallus	534	0	0	1	1.00
25	GCA_000159455.2	Limosilactobacillus reuteri SD2112	SD2112	SAMN00001494	-	-	Homo sapiens	539	2	0	0	2.00
26	GCA_018966925.1	Limosilactobacillus reuteri	LR1	SAMN19670539	2010-12-22	Russia: Moscow	Homo sapiens	539	0	0	1	1.00
27	GCA_020785435.1	Limosilactobacillus reuteri	M81-R43	SAMN22258606	2005	Japan	Homo sapiens	539	1	0	1	1.41
28	GCA_021229095.1	Limosilactobacillus reuteri	LLR-K67	SAMN23821603	2013	Bulgaria	Homo sapiens	539	0	0	1	1.00
29	GCA_041888795.1	Limosilactobacillus reuteri subsp. kinnaridis	BG-R46	SAMN43393323	2016-02	Sweden: Uppsala	Homo sapiens	539	0	0	0	0.00
30	GCA_041888805.1	Limosilactobacillus reuteri subsp. kinnaridis	DSM 17938	SAMN43393324	2006-01-12	Sweden: Uppsala	Homo sapiens	539	0	0	0	0.00
31	GCA_020785395.1	Limosilactobacillus reuteri	MV4-1a	SAMN22258605	1997	Finland	Homo sapiens	540	1	0	1	1.41
32	GCA_020785455.1	Limosilactobacillus reuteri	MM36-1a	SAMN22258604	1997	Finland	Homo sapiens	540	1	0	1	1.41
33	GCA_020785665.1	Limosilactobacillus reuteri	T3	SAMN22258594	1990	USA	turkey	540	1	0	1	1.41
34	GCA_021459965.1	Limosilactobacillus reuteri	M2021619	SAMN24114820	2020-09-15	China:Shanghai	Homo sapiens	540	0	0	0	0.00
35	GCA_021398615.1	Limosilactobacillus reuteri	DS0384	SAMN24255923	2019-05	South Korea	Homo sapiens	541	0	0	0	0.00
36	GCA_000159615.1	Limosilactobacillus reuteri CF48-3A	CF48-3A	SAMN00001503	-	-	Homo sapiens	542	2	0	1	2.24
37	GCA_025515425.1	Limosilactobacillus reuteri	SRCM210547	SAMN30948365	2020-04	South Korea:Jangsu	-	542	1	0	0	1.00
38	GCA_013694365.1	Limosilactobacillus reuteri	CNEI-KCA3	SAMN14639341	2018-04	Nigeria	chicken	546	5	0	0	5.00
39	GCA_020785815.1	Limosilactobacillus reuteri	L3B	SAMN22258588	2005	Brazil	Poultry	549	0	0	1	1.00
40	GCA_002007085.2	Limosilactobacillus reuteri	MD IIE-43	SAMN06315550	-	Russia	Homo sapiens	552	0	0	0	0.00
41	GCA_028129035.1	Limosilactobacillus reuteri	LR6	SAMN04318451	2010-08-30	India: Karnal	Homo sapiens	552	0	0	1	1.00
42	GCA_020785675.1	Limosilactobacillus reuteri	T1	SAMN22258593	1990	USA	turkey	554	0	0	1	1.00
43	GCA_028656225.1	Limosilactobacillus reuteri	SRCM217617	SAMN33195124	2022-09	South Korea:Sunchang	Bos taurus	555	0	0	0	0.00
44	GCA_009389385.1	Limosilactobacillus reuteri	PTA1_C4	SAMN09280109	2017	Switzerland	chicken	557	0	0	1	1.00
45	GCA_009389465.1	Limosilactobacillus reuteri	PTA8_1	SAMN09280106	2017	Switzerland	chicken	557	2	0	1	2.24
46	GCA_013487925.1	Limosilactobacillus reuteri	1B	SAMN13624823	2018-04	USA: North Carolina	Equus caballus	557	0	0	0	0.00
47	GCA_009389475.1	Limosilactobacillus reuteri	PTA5_11	SAMN09280105	2017	Switzerland	chicken	558	2	0	1	2.24
48	GCA_012275185.1	Limosilactobacillus reuteri	CNI-KCA2	SAMN13923556	2018-04	Nigeria	free-range chicken	561	0	0	0	0.00
49	GCA_028656395.1	Limosilactobacillus reuteri	SRCM217611	SAMN33145128	2022-09	South Korea:Sunchang	Bos taurus	561	1	0	0	1.00
50	GCA_009389215.1	Limosilactobacillus reuteri	PTA5_F13	SAMN09280118	2017	Switzerland	chicken	562	0	0	1	1.00
51	GCA_003046135.1	Limosilactobacillus reuteri	E81	SAMN08801720	2017	Turkey	-	567	0	0	1	1.00
52	GCA_003046055.1	Limosilactobacillus reuteri	LR5A	SAMN08801721	2017	Turkey	-	568	0	0	1	1.00
53	GCA_046883115.1	Limosilactobacillus reuteri	i 33.6/2	SAMN29751142	2018-10-26	Thailand	Gallus gallus	569	3	0	0	3.00
54	GCA_009389305.1	Limosilactobacillus reuteri	PTA4_C4	SAMN09280114	2017	Switzerland	chicken	571	0	0	1	1.00
55	GCA_046883135.1	Limosilactobacillus reuteri	i 35.3/2	SAMN29751143	2018-10-26	Thailand	Gallus gallus	571	3	0	1	3.16
56	GCA_020785895.1	Limosilactobacillus reuteri	EF3_1	SAMN22258584	2013-03	USA:Nebraska	Francolin	572	2	0	1	2.24
57	GCA_020785915.1	Limosilactobacillus reuteri	EF1_1	SAMN22258582	2013-03	USA:Nebraska	Francolin	572	0	0	1	1.00
58	GCA_020785995.1	Limosilactobacillus reuteri	EF2_1	SAMN22258583	2013-03	USA:Nebraska	Francolin	572	2	0	1	2.24
59	GCA_009389375.1	Limosilactobacillus reuteri	PTA2_C2	SAMN09280111	2017	Switzerland	chicken	575	0	0	1	1.00
60	GCA_028656315.1	Limosilactobacillus reuteri	SRCM217608	SAMN33144407	2022-09	South Korea:Sunchang	Bos taurus	575	0	0	0	0.00
61	GCA_014145445.1	Limosilactobacillus reuteri	AP3	SAMN15676324	2014-02	USA: Lincoln, Nebraska	Argus pheasant	576	1	0	1	1.41
62	GCA_020785975.1	Limosilactobacillus reuteri	AP5	SAMN22258579	2014-02	USA:Nebraska	Argus Pheasent	576	1	0	1	1.41
63	GCA_020786015.1	Limosilactobacillus reuteri	AP3	SAMN22258578	2014-02	USA:Nebraska	Argus Pheasent	576	1	0	1	1.41
64	GCA_009389105.1	Limosilactobacillus reuteri	PTA6_C7	SAMN09280124	2017	Switzerland	chicken	577	0	0	1	1.00
65	GCA_009389155.1	Limosilactobacillus reuteri	PTA5_C5	SAMN09280120	2017	Switzerland	chicken	577	0	0	1	1.00
66	GCA_020786045.1	Limosilactobacillus reuteri	4A	SAMN22258576	-	Canada:Calgary	African spoonbiil	578	0	0	1	1.00
67	GCA_020786095.1	Limosilactobacillus reuteri	AP1	SAMN22258577	2015	USA:Nebraska	Argus Pheasent	579	0	0	1	1.00
68	GCA_033447155.1	Limosilactobacillus reuteri	MCC 0212	SAMN38086439	2013-02	India: Maharashtra	-	580	1	0	0	1.00
69	GCA_020785755.1	Limosilactobacillus reuteri	GQ_1_2_1	SAMN22258589	2013-03	USA:Nebraska	Quail	582	4	0	1	4.12
70	GCA_020785765.1	Limosilactobacillus reuteri	GQ_1_7_1	SAMN22258591	2013-03	USA:Nebraska	Quail	582	4	0	1	4.12
71	GCA_020785795.1	Limosilactobacillus reuteri	GQ_1_3_1	SAMN22258590	2013-03	USA:Nebraska	Quail	582	4	0	1	4.12
72	GCA_020785835.1	Limosilactobacillus reuteri	GP6	SAMN22258587	2014-02	USA:Nebraska	Golden pheasant	582	1	0	1	1.41
73	GCA_020785855.1	Limosilactobacillus reuteri	GP1	SAMN22258585	2014-02	USA:Nebraska	Golden pheasant	582	1	0	1	1.41
74	GCA_020785865.1	Limosilactobacillus reuteri	GP3	SAMN22258586	2014-02	USA:Nebraska	Golden pheasant	582	1	0	1	1.41
75	GCA_028656195.1	Limosilactobacillus reuteri	SRCM217616	SAMN33195121	2022-09	South Korea:Sunchang	Bos taurus	594	1	0	0	1.00
76	GCA_028656265.1	Limosilactobacillus reuteri	SRCM217606	SAMN33144386	2022-09	South Korea:Sunchang	Bos taurus	594	1	0	0	1.00
77	GCA_028656325.1	Limosilactobacillus reuteri	SRCM217607	SAMN33144399	2022-09	South Korea:Sunchang	Bos taurus	594	1	0	0	1.00
78	GCA_014336805.1	Limosilactobacillus reuteri	OSU_LbReu_2.2	SAMN09650462	2018-07-01	USA: Wooster	chicken	596	0	0	1	1.00
79	GCA_009389325.1	Limosilactobacillus reuteri	PTA4_C2	SAMN09280113	2017	Switzerland	chicken	600	0	0	1	1.00
80	GCA_020785295.1	Limosilactobacillus reuteri	PB-W2	SAMN22258613	2015-03	Papua New Guinea	Homo sapiens	601	0	0	1	1.00
81	GCA_036621895.1	Limosilactobacillus reuteri subsp. porcinus	3c6	SAMEA3220432	-	-	-	685	2	0	1	2.24
82	GCA_047456375.1	Limosilactobacillus reuteri	ZJ617	SAMN45230876	2009	China: Hangzhou	pig	686	2	0	0	2.00
83	GCA_002888655.1	Limosilactobacillus reuteri	20-2	SAMEA3220431	-	-	-	687	1	0	1	1.41
84	GCA_020784195.1	Limosilactobacillus reuteri	BHM_Thaddeus_3_1	SAMN22258667	2014-02	USA:California	Black Howler Monkey	698	0	0	1	1.00
85	GCA_020785135.1	Limosilactobacillus reuteri	BHM_Lincecum_2_1	SAMN22258622	2014-02	USA:California	Black Howler Monkey	698	0	0	1	1.00
86	GCA_020785145.1	Limosilactobacillus reuteri	BHM_Thaddeus_2_1	SAMN22258623	2014-02	USA:California	Black Howler Monkey	699	0	0	1	1.00
87	GCA_019336465.1	Limosilactobacillus reuteri	Fn041	SAMN20256385	2019-07-06	China: Lintan, Gansu	Homo sapiens	702	0	0	1	1.00
88	GCA_020023775.1	Limosilactobacillus reuteri	SD-LRE2-IT	SAMN19814906	2020-01-01	Italy	Homo sapiens	702	1	0	0	1.00
89	GCA_024652885.1	Limosilactobacillus reuteri	FN041	SAMN30113476	2015-01	China:Gansu	Homo sapiens	702	0	0	0	0.00
90	GCA_020784805.1	Limosilactobacillus reuteri	PM_Patrick_6_1	SAMN22258636	2014-02	USA:California	Patas monkey	705	0	0	1	1.00
91	GCA_020784875.1	Limosilactobacillus reuteri	PM_Patrick_1_1	SAMN22258635	2014-02	USA:California	Patas monkey	705	0	0	1	1.00
92	GCA_025369755.1	Limosilactobacillus reuteri	AM_LB1	SAMN30836479	2019	USA: Georgia	Gallus gallus	705	0	0	0	0.00
93	GCA_018917025.1	Limosilactobacillus reuteri	N11	SAMN19374067	2019-08	China: Suzhou	Macaca fascicularis	706	0	0	1	1.00
94	GCA_020784915.1	Limosilactobacillus reuteri	M_Angie_4_1	SAMN22258633	2014-02	USA:California	Mandrill	706	0	0	1	1.00
95	GCA_020784935.1	Limosilactobacillus reuteri	M_Angie_1_1	SAMN22258632	2014-02	USA:California	Mandrill	706	0	0	1	1.00
96	GCA_000010005.1	Limosilactobacillus reuteri subsp. reuteri JCM 1112	-	SAMD00060920	-	-	-	707	0	0	0	0.00
97	GCA_000016825.1	Limosilactobacillus reuteri subsp. reuteri	DSM 20016	SAMN02598351	-	-	-	707	0	0	0	0.00
98	GCA_000159475.2	Limosilactobacillus reuteri MM4-1A	MM4-1A	SAMN00001504	-	-	Homo sapiens	707	0	0	1	1.00
99	GCA_000160715.1	Limosilactobacillus reuteri MM2-3	MM2-3	SAMN00002242	-	-	Homo sapiens	707	1	0	1	1.41
100	GCA_000758185.1	Limosilactobacillus reuteri	LTH5448	SAMN02869572	1998	Germany	-	707	0	0	1	1.00