GCA_009677385.1 - 8 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Pyruvate2acetate-formate	SCFA	90,859	113,834	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00005_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	182,737	207,797	Rnf complex C. sporogenes	RNF	83%

c00014_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	51,591	75,061	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00015_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	porA	SCFA	21,845	44,680	porA C. sporogenes	POR	60%

c00016_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	OD_unknown	Putative	26,598	49,101

c00025_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	TPP_AA_metabolism	Putative	478,318	502,274

c00036_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	TPP_fatty_acids	Putative	278,521	303,378

c00069_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_69)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	succinate2propionate	SCFA	246,348	270,876	Succinate to propionate B. theta	PRO	50%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_1); c00002_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_2); c00003_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_3); c00006_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_6); c00007_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_7); c00008_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_8); c00009_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_9); c00010_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_10); c00011_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_11); c00012_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_12); c00013_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_13); c00017_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_17); c00018_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_18); c00019_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_19); c00020_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_20); c00021_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_21); c00022_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_22); c00023_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_23); c00024_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_24); c00026_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_26); c00027_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_27); c00028_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_28); c00029_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_29); c00030_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_30); c00031_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_31); c00032_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_32); c00033_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_33); c00034_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_34); c00035_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_35); c00037_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_37); c00038_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_38); c00039_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_39); c00040_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_40); c00041_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_41); c00042_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_42); c00043_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_43); c00044_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_44); c00045_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_45); c00046_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_46); c00047_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_47); c00048_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_48); c00049_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_49); c00050_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_50); c00051_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_51); c00052_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_52); c00053_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_53); c00054_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_54); c00055_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_55); c00056_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_56); c00057_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_57); c00058_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_58); c00059_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_59); c00060_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_60); c00061_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_61); c00062_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_62); c00063_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_63); c00064_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_64); c00065_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_65); c00066_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_66); c00067_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_67); c00068_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_68); c00070_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_70); c00071_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_71); c00072_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_72); c00073_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_73); c00074_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_74); c00075_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_75); c00076_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_76); c00077_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_77); c00078_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_78); c00079_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_79); c00080_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_80); c00081_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_81); c00082_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_82); c00083_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_83); c00084_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_84); c00085_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_85); c00086_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_86); c00087_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_87); c00088_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_88); c00089_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_89); c00090_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_90); c00091_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_91); c00092_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_92); c00093_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_93); c00094_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_94); c00095_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_95); c00096_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_96); c00097_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_97); c00098_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_98); c00099_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_99); c00100_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_100); c00101_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_101); c00102_gnlPro.. (original name was: gnl|Prokka|PMPJFOEO_102)

Compact view

c00004_gnlPro.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 90,859 - 113,834 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00005_gnlPro.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 182,737 - 207,797 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00014_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 51,591 - 75,061 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00015_gnlPro.. - Region 1 - porA

Download region GenBank file

Location: 21,845 - 44,680 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00016_gnlPro.. - Region 1 - OD_unknown

Download region GenBank file

Location: 26,598 - 49,101 nt. (total: 22,504 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00025_gnlPro.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 478,318 - 502,274 nt. (total: 23,957 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00036_gnlPro.. - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 278,521 - 303,378 nt. (total: 24,858 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00069_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 246,348 - 270,876 nt. (total: 24,529 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters