GCA_009679255.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLDCONKOO_4 (original name was: gnl|Prokka|LDCONKOO_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	81,133	87,785

gnlProkkaLDCONKOO_11 (original name was: gnl|Prokka|LDCONKOO_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	T3PKS	272,761	313,933

gnlProkkaLDCONKOO_28 (original name was: gnl|Prokka|LDCONKOO_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	RiPP-like	291,858	302,043

Region	Type	From	To	Similarity
Region 4.1	RiPP-like	81,133	87,785
Region 11.1	T3PKS	272,761	313,933
Region 28.1	RiPP-like	291,858	302,043

No secondary metabolite regions were found in these records:: gnlProkkaLDCONKOO_1 (original name was: gnl|Prokka|LDCONKOO_1); gnlProkkaLDCONKOO_2 (original name was: gnl|Prokka|LDCONKOO_2); gnlProkkaLDCONKOO_3 (original name was: gnl|Prokka|LDCONKOO_3); gnlProkkaLDCONKOO_5 (original name was: gnl|Prokka|LDCONKOO_5); gnlProkkaLDCONKOO_6 (original name was: gnl|Prokka|LDCONKOO_6); gnlProkkaLDCONKOO_7 (original name was: gnl|Prokka|LDCONKOO_7); gnlProkkaLDCONKOO_8 (original name was: gnl|Prokka|LDCONKOO_8); gnlProkkaLDCONKOO_9 (original name was: gnl|Prokka|LDCONKOO_9); gnlProkkaLDCONKOO_10 (original name was: gnl|Prokka|LDCONKOO_10); gnlProkkaLDCONKOO_12 (original name was: gnl|Prokka|LDCONKOO_12); gnlProkkaLDCONKOO_13 (original name was: gnl|Prokka|LDCONKOO_13); gnlProkkaLDCONKOO_14 (original name was: gnl|Prokka|LDCONKOO_14); gnlProkkaLDCONKOO_15 (original name was: gnl|Prokka|LDCONKOO_15); gnlProkkaLDCONKOO_16 (original name was: gnl|Prokka|LDCONKOO_16); gnlProkkaLDCONKOO_17 (original name was: gnl|Prokka|LDCONKOO_17); gnlProkkaLDCONKOO_18 (original name was: gnl|Prokka|LDCONKOO_18); gnlProkkaLDCONKOO_19 (original name was: gnl|Prokka|LDCONKOO_19); gnlProkkaLDCONKOO_20 (original name was: gnl|Prokka|LDCONKOO_20); gnlProkkaLDCONKOO_21 (original name was: gnl|Prokka|LDCONKOO_21); gnlProkkaLDCONKOO_22 (original name was: gnl|Prokka|LDCONKOO_22); gnlProkkaLDCONKOO_23 (original name was: gnl|Prokka|LDCONKOO_23); gnlProkkaLDCONKOO_24 (original name was: gnl|Prokka|LDCONKOO_24); gnlProkkaLDCONKOO_25 (original name was: gnl|Prokka|LDCONKOO_25); gnlProkkaLDCONKOO_26 (original name was: gnl|Prokka|LDCONKOO_26); gnlProkkaLDCONKOO_27 (original name was: gnl|Prokka|LDCONKOO_27); gnlProkkaLDCONKOO_29 (original name was: gnl|Prokka|LDCONKOO_29); gnlProkkaLDCONKOO_30 (original name was: gnl|Prokka|LDCONKOO_30); gnlProkkaLDCONKOO_31 (original name was: gnl|Prokka|LDCONKOO_31); gnlProkkaLDCONKOO_32 (original name was: gnl|Prokka|LDCONKOO_32); gnlProkkaLDCONKOO_33 (original name was: gnl|Prokka|LDCONKOO_33)

Compact view

gnlProkkaLDCONKOO_4 - Region 1 - RiPP-like

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Location: 81,133 - 87,785 nt. (total: 6,653 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDCONKOO_11 - Region 1 - T3PKS

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Location: 272,761 - 313,933 nt. (total: 41,173 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLDCONKOO_28 - Region 1 - RiPP-like

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Location: 291,858 - 302,043 nt. (total: 10,186 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.