GCA_009680055.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJNNEHKAM_13 (original name was: gnl|Prokka|JNNEHKAM_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	cyclic-lactone-autoinducer	72,298	89,812

gnlProkkaJNNEHKAM_23 (original name was: gnl|Prokka|JNNEHKAM_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	cyclic-lactone-autoinducer	21,296	36,653

gnlProkkaJNNEHKAM_27 (original name was: gnl|Prokka|JNNEHKAM_27)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	lassopeptide	1	14,267

gnlProkkaJNNEHKAM_48 (original name was: gnl|Prokka|JNNEHKAM_48)

Region	Type	From	To	Most similar known cluster		Similarity
Region 48.1	cyclic-lactone-autoinducer	122,211	142,678

gnlProkkaJNNEHKAM_70 (original name was: gnl|Prokka|JNNEHKAM_70)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	ranthipeptide	106,351	128,016

Region	Type	From	To	Similarity
Region 13.1	cyclic-lactone-autoinducer	72,298	89,812
Region 23.1	cyclic-lactone-autoinducer	21,296	36,653
Region 27.1	lassopeptide	1	14,267
Region 48.1	cyclic-lactone-autoinducer	122,211	142,678
Region 70.1	ranthipeptide	106,351	128,016

Compact view

gnlProkkaJNNEHKAM_13 - Region 1 - cyclic-lactone-autoinducer

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Location: 72,298 - 89,812 nt. (total: 17,515 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJNNEHKAM_23 - Region 1 - cyclic-lactone-autoinducer

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Location: 21,296 - 36,653 nt. (total: 15,358 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJNNEHKAM_27 - Region 1 - lassopeptide

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Location: 1 - 14,267 nt. (total: 14,267 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lasso peptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lasso peptide predictions

Lassopeptides - No core peptides found.

Lasso peptides

Core peptide predictions

No core peptides found.

gnlProkkaJNNEHKAM_48 - Region 1 - cyclic-lactone-autoinducer

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Location: 122,211 - 142,678 nt. (total: 20,468 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJNNEHKAM_70 - Region 1 - ranthipeptide

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Location: 106,351 - 128,016 nt. (total: 21,666 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.