GCA_009716765.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDACFKGJC_6 (original name was: gnl|Prokka|DACFKGJC_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	T3PKS	5,090	45,435

gnlProkkaDACFKGJC_23 (original name was: gnl|Prokka|DACFKGJC_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	RiPP-like	136,391	148,487	quinolidomicin A	Polyketide	3%

gnlProkkaDACFKGJC_26 (original name was: gnl|Prokka|DACFKGJC_26)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	RiPP-like	24,263	43,055

gnlProkkaDACFKGJC_28 (original name was: gnl|Prokka|DACFKGJC_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	RRE-containing	46,997	68,130

Region	Type	From	To	Most similar known cluster	Similarity
Region 6.1	T3PKS	5,090	45,435
Region 23.1	RiPP-like	136,391	148,487	quinolidomicin A	Polyketide	3%
Region 26.1	RiPP-like	24,263	43,055
Region 28.1	RRE-containing	46,997	68,130

No secondary metabolite regions were found in these records:: gnlProkkaDACFKGJC_1 (original name was: gnl|Prokka|DACFKGJC_1); gnlProkkaDACFKGJC_2 (original name was: gnl|Prokka|DACFKGJC_2); gnlProkkaDACFKGJC_3 (original name was: gnl|Prokka|DACFKGJC_3); gnlProkkaDACFKGJC_4 (original name was: gnl|Prokka|DACFKGJC_4); gnlProkkaDACFKGJC_5 (original name was: gnl|Prokka|DACFKGJC_5); gnlProkkaDACFKGJC_7 (original name was: gnl|Prokka|DACFKGJC_7); gnlProkkaDACFKGJC_8 (original name was: gnl|Prokka|DACFKGJC_8); gnlProkkaDACFKGJC_9 (original name was: gnl|Prokka|DACFKGJC_9); gnlProkkaDACFKGJC_10 (original name was: gnl|Prokka|DACFKGJC_10); gnlProkkaDACFKGJC_11 (original name was: gnl|Prokka|DACFKGJC_11); gnlProkkaDACFKGJC_12 (original name was: gnl|Prokka|DACFKGJC_12); gnlProkkaDACFKGJC_13 (original name was: gnl|Prokka|DACFKGJC_13); gnlProkkaDACFKGJC_14 (original name was: gnl|Prokka|DACFKGJC_14); gnlProkkaDACFKGJC_15 (original name was: gnl|Prokka|DACFKGJC_15); gnlProkkaDACFKGJC_16 (original name was: gnl|Prokka|DACFKGJC_16); gnlProkkaDACFKGJC_17 (original name was: gnl|Prokka|DACFKGJC_17); gnlProkkaDACFKGJC_18 (original name was: gnl|Prokka|DACFKGJC_18); gnlProkkaDACFKGJC_19 (original name was: gnl|Prokka|DACFKGJC_19); gnlProkkaDACFKGJC_20 (original name was: gnl|Prokka|DACFKGJC_20); gnlProkkaDACFKGJC_21 (original name was: gnl|Prokka|DACFKGJC_21); gnlProkkaDACFKGJC_22 (original name was: gnl|Prokka|DACFKGJC_22); gnlProkkaDACFKGJC_24 (original name was: gnl|Prokka|DACFKGJC_24); gnlProkkaDACFKGJC_25 (original name was: gnl|Prokka|DACFKGJC_25); gnlProkkaDACFKGJC_27 (original name was: gnl|Prokka|DACFKGJC_27); gnlProkkaDACFKGJC_29 (original name was: gnl|Prokka|DACFKGJC_29)

Compact view

gnlProkkaDACFKGJC_6 - Region 1 - T3PKS

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Location: 5,090 - 45,435 nt. (total: 40,346 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDACFKGJC_23 - Region 1 - RiPP-like

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Location: 136,391 - 148,487 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDACFKGJC_26 - Region 1 - RiPP-like

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Location: 24,263 - 43,055 nt. (total: 18,793 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDACFKGJC_28 - Region 1 - RRE-containing

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Location: 46,997 - 68,130 nt. (total: 21,134 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.