GCA_009716875.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPCHDJPAE_7 (original name was: gnl|Prokka|PCHDJPAE_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RRE-containing	17,903	39,036

gnlProkkaPCHDJPAE_11 (original name was: gnl|Prokka|PCHDJPAE_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	106,245	118,341	quinolidomicin A	Polyketide	3%

gnlProkkaPCHDJPAE_12 (original name was: gnl|Prokka|PCHDJPAE_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	T3PKS	4,273	36,455

gnlProkkaPCHDJPAE_44 (original name was: gnl|Prokka|PCHDJPAE_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	RiPP-like	117,753	136,545

Region	Type	From	To	Most similar known cluster	Similarity
Region 7.1	RRE-containing	17,903	39,036
Region 11.1	RiPP-like	106,245	118,341	quinolidomicin A	Polyketide	3%
Region 12.1	T3PKS	4,273	36,455
Region 44.1	RiPP-like	117,753	136,545

No secondary metabolite regions were found in these records:: gnlProkkaPCHDJPAE_1 (original name was: gnl|Prokka|PCHDJPAE_1); gnlProkkaPCHDJPAE_2 (original name was: gnl|Prokka|PCHDJPAE_2); gnlProkkaPCHDJPAE_3 (original name was: gnl|Prokka|PCHDJPAE_3); gnlProkkaPCHDJPAE_4 (original name was: gnl|Prokka|PCHDJPAE_4); gnlProkkaPCHDJPAE_5 (original name was: gnl|Prokka|PCHDJPAE_5); gnlProkkaPCHDJPAE_6 (original name was: gnl|Prokka|PCHDJPAE_6); gnlProkkaPCHDJPAE_8 (original name was: gnl|Prokka|PCHDJPAE_8); gnlProkkaPCHDJPAE_9 (original name was: gnl|Prokka|PCHDJPAE_9); gnlProkkaPCHDJPAE_10 (original name was: gnl|Prokka|PCHDJPAE_10); gnlProkkaPCHDJPAE_13 (original name was: gnl|Prokka|PCHDJPAE_13); gnlProkkaPCHDJPAE_14 (original name was: gnl|Prokka|PCHDJPAE_14); gnlProkkaPCHDJPAE_15 (original name was: gnl|Prokka|PCHDJPAE_15); gnlProkkaPCHDJPAE_16 (original name was: gnl|Prokka|PCHDJPAE_16); gnlProkkaPCHDJPAE_17 (original name was: gnl|Prokka|PCHDJPAE_17); gnlProkkaPCHDJPAE_18 (original name was: gnl|Prokka|PCHDJPAE_18); gnlProkkaPCHDJPAE_19 (original name was: gnl|Prokka|PCHDJPAE_19); gnlProkkaPCHDJPAE_20 (original name was: gnl|Prokka|PCHDJPAE_20); gnlProkkaPCHDJPAE_21 (original name was: gnl|Prokka|PCHDJPAE_21); gnlProkkaPCHDJPAE_22 (original name was: gnl|Prokka|PCHDJPAE_22); gnlProkkaPCHDJPAE_23 (original name was: gnl|Prokka|PCHDJPAE_23); gnlProkkaPCHDJPAE_24 (original name was: gnl|Prokka|PCHDJPAE_24); gnlProkkaPCHDJPAE_25 (original name was: gnl|Prokka|PCHDJPAE_25); gnlProkkaPCHDJPAE_26 (original name was: gnl|Prokka|PCHDJPAE_26); gnlProkkaPCHDJPAE_27 (original name was: gnl|Prokka|PCHDJPAE_27); gnlProkkaPCHDJPAE_28 (original name was: gnl|Prokka|PCHDJPAE_28); gnlProkkaPCHDJPAE_29 (original name was: gnl|Prokka|PCHDJPAE_29); gnlProkkaPCHDJPAE_30 (original name was: gnl|Prokka|PCHDJPAE_30); gnlProkkaPCHDJPAE_31 (original name was: gnl|Prokka|PCHDJPAE_31); gnlProkkaPCHDJPAE_32 (original name was: gnl|Prokka|PCHDJPAE_32); gnlProkkaPCHDJPAE_33 (original name was: gnl|Prokka|PCHDJPAE_33); gnlProkkaPCHDJPAE_34 (original name was: gnl|Prokka|PCHDJPAE_34); gnlProkkaPCHDJPAE_35 (original name was: gnl|Prokka|PCHDJPAE_35); gnlProkkaPCHDJPAE_36 (original name was: gnl|Prokka|PCHDJPAE_36); gnlProkkaPCHDJPAE_37 (original name was: gnl|Prokka|PCHDJPAE_37); gnlProkkaPCHDJPAE_38 (original name was: gnl|Prokka|PCHDJPAE_38); gnlProkkaPCHDJPAE_39 (original name was: gnl|Prokka|PCHDJPAE_39); gnlProkkaPCHDJPAE_40 (original name was: gnl|Prokka|PCHDJPAE_40); gnlProkkaPCHDJPAE_41 (original name was: gnl|Prokka|PCHDJPAE_41); gnlProkkaPCHDJPAE_42 (original name was: gnl|Prokka|PCHDJPAE_42); gnlProkkaPCHDJPAE_43 (original name was: gnl|Prokka|PCHDJPAE_43); gnlProkkaPCHDJPAE_45 (original name was: gnl|Prokka|PCHDJPAE_45); gnlProkkaPCHDJPAE_46 (original name was: gnl|Prokka|PCHDJPAE_46); gnlProkkaPCHDJPAE_47 (original name was: gnl|Prokka|PCHDJPAE_47); gnlProkkaPCHDJPAE_48 (original name was: gnl|Prokka|PCHDJPAE_48); gnlProkkaPCHDJPAE_49 (original name was: gnl|Prokka|PCHDJPAE_49); gnlProkkaPCHDJPAE_50 (original name was: gnl|Prokka|PCHDJPAE_50); gnlProkkaPCHDJPAE_51 (original name was: gnl|Prokka|PCHDJPAE_51); gnlProkkaPCHDJPAE_52 (original name was: gnl|Prokka|PCHDJPAE_52); gnlProkkaPCHDJPAE_53 (original name was: gnl|Prokka|PCHDJPAE_53); gnlProkkaPCHDJPAE_54 (original name was: gnl|Prokka|PCHDJPAE_54); gnlProkkaPCHDJPAE_55 (original name was: gnl|Prokka|PCHDJPAE_55); gnlProkkaPCHDJPAE_56 (original name was: gnl|Prokka|PCHDJPAE_56); gnlProkkaPCHDJPAE_57 (original name was: gnl|Prokka|PCHDJPAE_57); gnlProkkaPCHDJPAE_58 (original name was: gnl|Prokka|PCHDJPAE_58)

Compact view

gnlProkkaPCHDJPAE_7 - Region 1 - RRE-containing

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Location: 17,903 - 39,036 nt. (total: 21,134 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPCHDJPAE_11 - Region 1 - RiPP-like

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Location: 106,245 - 118,341 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaPCHDJPAE_12 - Region 1 - T3PKS

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Location: 4,273 - 36,455 nt. (total: 32,183 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPCHDJPAE_44 - Region 1 - RiPP-like

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Location: 117,753 - 136,545 nt. (total: 18,793 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.