GCA_009717255.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJPOMIHPE_5 (original name was: gnl|Prokka|JPOMIHPE_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	T3PKS	4,955	45,300

gnlProkkaJPOMIHPE_11 (original name was: gnl|Prokka|JPOMIHPE_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	136,256	148,352	quinolidomicin A	Polyketide	3%

gnlProkkaJPOMIHPE_29 (original name was: gnl|Prokka|JPOMIHPE_29)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	RiPP-like	117,753	136,545

gnlProkkaJPOMIHPE_32 (original name was: gnl|Prokka|JPOMIHPE_32)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	RRE-containing	46,862	67,995

Region	Type	From	To	Most similar known cluster	Similarity
Region 5.1	T3PKS	4,955	45,300
Region 11.1	RiPP-like	136,256	148,352	quinolidomicin A	Polyketide	3%
Region 29.1	RiPP-like	117,753	136,545
Region 32.1	RRE-containing	46,862	67,995

No secondary metabolite regions were found in these records:: gnlProkkaJPOMIHPE_1 (original name was: gnl|Prokka|JPOMIHPE_1); gnlProkkaJPOMIHPE_2 (original name was: gnl|Prokka|JPOMIHPE_2); gnlProkkaJPOMIHPE_3 (original name was: gnl|Prokka|JPOMIHPE_3); gnlProkkaJPOMIHPE_4 (original name was: gnl|Prokka|JPOMIHPE_4); gnlProkkaJPOMIHPE_6 (original name was: gnl|Prokka|JPOMIHPE_6); gnlProkkaJPOMIHPE_7 (original name was: gnl|Prokka|JPOMIHPE_7); gnlProkkaJPOMIHPE_8 (original name was: gnl|Prokka|JPOMIHPE_8); gnlProkkaJPOMIHPE_9 (original name was: gnl|Prokka|JPOMIHPE_9); gnlProkkaJPOMIHPE_10 (original name was: gnl|Prokka|JPOMIHPE_10); gnlProkkaJPOMIHPE_12 (original name was: gnl|Prokka|JPOMIHPE_12); gnlProkkaJPOMIHPE_13 (original name was: gnl|Prokka|JPOMIHPE_13); gnlProkkaJPOMIHPE_14 (original name was: gnl|Prokka|JPOMIHPE_14); gnlProkkaJPOMIHPE_15 (original name was: gnl|Prokka|JPOMIHPE_15); gnlProkkaJPOMIHPE_16 (original name was: gnl|Prokka|JPOMIHPE_16); gnlProkkaJPOMIHPE_17 (original name was: gnl|Prokka|JPOMIHPE_17); gnlProkkaJPOMIHPE_18 (original name was: gnl|Prokka|JPOMIHPE_18); gnlProkkaJPOMIHPE_19 (original name was: gnl|Prokka|JPOMIHPE_19); gnlProkkaJPOMIHPE_20 (original name was: gnl|Prokka|JPOMIHPE_20); gnlProkkaJPOMIHPE_21 (original name was: gnl|Prokka|JPOMIHPE_21); gnlProkkaJPOMIHPE_22 (original name was: gnl|Prokka|JPOMIHPE_22); gnlProkkaJPOMIHPE_23 (original name was: gnl|Prokka|JPOMIHPE_23); gnlProkkaJPOMIHPE_24 (original name was: gnl|Prokka|JPOMIHPE_24); gnlProkkaJPOMIHPE_25 (original name was: gnl|Prokka|JPOMIHPE_25); gnlProkkaJPOMIHPE_26 (original name was: gnl|Prokka|JPOMIHPE_26); gnlProkkaJPOMIHPE_27 (original name was: gnl|Prokka|JPOMIHPE_27); gnlProkkaJPOMIHPE_28 (original name was: gnl|Prokka|JPOMIHPE_28); gnlProkkaJPOMIHPE_30 (original name was: gnl|Prokka|JPOMIHPE_30); gnlProkkaJPOMIHPE_31 (original name was: gnl|Prokka|JPOMIHPE_31); gnlProkkaJPOMIHPE_33 (original name was: gnl|Prokka|JPOMIHPE_33); gnlProkkaJPOMIHPE_34 (original name was: gnl|Prokka|JPOMIHPE_34)

Compact view

gnlProkkaJPOMIHPE_5 - Region 1 - T3PKS

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Location: 4,955 - 45,300 nt. (total: 40,346 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJPOMIHPE_11 - Region 1 - RiPP-like

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Location: 136,256 - 148,352 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaJPOMIHPE_29 - Region 1 - RiPP-like

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Location: 117,753 - 136,545 nt. (total: 18,793 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJPOMIHPE_32 - Region 1 - RRE-containing

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Location: 46,862 - 67,995 nt. (total: 21,134 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.