GCA_009717305.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHMPMLPCN_6 (original name was: gnl|Prokka|HMPMLPCN_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RiPP-like	1	8,389	quinolidomicin A	Polyketide	3%

gnlProkkaHMPMLPCN_8 (original name was: gnl|Prokka|HMPMLPCN_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	T3PKS	1	40,167

gnlProkkaHMPMLPCN_10 (original name was: gnl|Prokka|HMPMLPCN_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	hglE-KS	1	27,129

gnlProkkaHMPMLPCN_58 (original name was: gnl|Prokka|HMPMLPCN_58)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	RiPP-like	23,307	33,579
Region 58.2	RiPP-like	106,717	116,948

gnlProkkaHMPMLPCN_59 (original name was: gnl|Prokka|HMPMLPCN_59)

Region	Type	From	To	Most similar known cluster		Similarity
Region 59.1	RiPP-like	91,626	108,621

No secondary metabolite regions were found in these records:: gnlProkkaHMPMLPCN_1 (original name was: gnl|Prokka|HMPMLPCN_1); gnlProkkaHMPMLPCN_2 (original name was: gnl|Prokka|HMPMLPCN_2); gnlProkkaHMPMLPCN_3 (original name was: gnl|Prokka|HMPMLPCN_3); gnlProkkaHMPMLPCN_4 (original name was: gnl|Prokka|HMPMLPCN_4); gnlProkkaHMPMLPCN_5 (original name was: gnl|Prokka|HMPMLPCN_5); gnlProkkaHMPMLPCN_7 (original name was: gnl|Prokka|HMPMLPCN_7); gnlProkkaHMPMLPCN_9 (original name was: gnl|Prokka|HMPMLPCN_9); gnlProkkaHMPMLPCN_11 (original name was: gnl|Prokka|HMPMLPCN_11); gnlProkkaHMPMLPCN_12 (original name was: gnl|Prokka|HMPMLPCN_12); gnlProkkaHMPMLPCN_13 (original name was: gnl|Prokka|HMPMLPCN_13); gnlProkkaHMPMLPCN_14 (original name was: gnl|Prokka|HMPMLPCN_14); gnlProkkaHMPMLPCN_15 (original name was: gnl|Prokka|HMPMLPCN_15); gnlProkkaHMPMLPCN_16 (original name was: gnl|Prokka|HMPMLPCN_16); gnlProkkaHMPMLPCN_17 (original name was: gnl|Prokka|HMPMLPCN_17); gnlProkkaHMPMLPCN_18 (original name was: gnl|Prokka|HMPMLPCN_18); gnlProkkaHMPMLPCN_19 (original name was: gnl|Prokka|HMPMLPCN_19); gnlProkkaHMPMLPCN_20 (original name was: gnl|Prokka|HMPMLPCN_20); gnlProkkaHMPMLPCN_21 (original name was: gnl|Prokka|HMPMLPCN_21); gnlProkkaHMPMLPCN_22 (original name was: gnl|Prokka|HMPMLPCN_22); gnlProkkaHMPMLPCN_23 (original name was: gnl|Prokka|HMPMLPCN_23); gnlProkkaHMPMLPCN_24 (original name was: gnl|Prokka|HMPMLPCN_24); gnlProkkaHMPMLPCN_25 (original name was: gnl|Prokka|HMPMLPCN_25); gnlProkkaHMPMLPCN_26 (original name was: gnl|Prokka|HMPMLPCN_26); gnlProkkaHMPMLPCN_27 (original name was: gnl|Prokka|HMPMLPCN_27); gnlProkkaHMPMLPCN_28 (original name was: gnl|Prokka|HMPMLPCN_28); gnlProkkaHMPMLPCN_29 (original name was: gnl|Prokka|HMPMLPCN_29); gnlProkkaHMPMLPCN_30 (original name was: gnl|Prokka|HMPMLPCN_30); gnlProkkaHMPMLPCN_31 (original name was: gnl|Prokka|HMPMLPCN_31); gnlProkkaHMPMLPCN_32 (original name was: gnl|Prokka|HMPMLPCN_32); gnlProkkaHMPMLPCN_33 (original name was: gnl|Prokka|HMPMLPCN_33); gnlProkkaHMPMLPCN_34 (original name was: gnl|Prokka|HMPMLPCN_34); gnlProkkaHMPMLPCN_35 (original name was: gnl|Prokka|HMPMLPCN_35); gnlProkkaHMPMLPCN_36 (original name was: gnl|Prokka|HMPMLPCN_36); gnlProkkaHMPMLPCN_37 (original name was: gnl|Prokka|HMPMLPCN_37); gnlProkkaHMPMLPCN_38 (original name was: gnl|Prokka|HMPMLPCN_38); gnlProkkaHMPMLPCN_39 (original name was: gnl|Prokka|HMPMLPCN_39); gnlProkkaHMPMLPCN_40 (original name was: gnl|Prokka|HMPMLPCN_40); gnlProkkaHMPMLPCN_41 (original name was: gnl|Prokka|HMPMLPCN_41); gnlProkkaHMPMLPCN_42 (original name was: gnl|Prokka|HMPMLPCN_42); gnlProkkaHMPMLPCN_43 (original name was: gnl|Prokka|HMPMLPCN_43); gnlProkkaHMPMLPCN_44 (original name was: gnl|Prokka|HMPMLPCN_44); gnlProkkaHMPMLPCN_45 (original name was: gnl|Prokka|HMPMLPCN_45); gnlProkkaHMPMLPCN_46 (original name was: gnl|Prokka|HMPMLPCN_46); gnlProkkaHMPMLPCN_47 (original name was: gnl|Prokka|HMPMLPCN_47); gnlProkkaHMPMLPCN_48 (original name was: gnl|Prokka|HMPMLPCN_48); gnlProkkaHMPMLPCN_49 (original name was: gnl|Prokka|HMPMLPCN_49); gnlProkkaHMPMLPCN_50 (original name was: gnl|Prokka|HMPMLPCN_50); gnlProkkaHMPMLPCN_51 (original name was: gnl|Prokka|HMPMLPCN_51); gnlProkkaHMPMLPCN_52 (original name was: gnl|Prokka|HMPMLPCN_52); gnlProkkaHMPMLPCN_53 (original name was: gnl|Prokka|HMPMLPCN_53); gnlProkkaHMPMLPCN_54 (original name was: gnl|Prokka|HMPMLPCN_54); gnlProkkaHMPMLPCN_55 (original name was: gnl|Prokka|HMPMLPCN_55); gnlProkkaHMPMLPCN_56 (original name was: gnl|Prokka|HMPMLPCN_56); gnlProkkaHMPMLPCN_57 (original name was: gnl|Prokka|HMPMLPCN_57); gnlProkkaHMPMLPCN_60 (original name was: gnl|Prokka|HMPMLPCN_60); gnlProkkaHMPMLPCN_61 (original name was: gnl|Prokka|HMPMLPCN_61)

Compact view

gnlProkkaHMPMLPCN_6 - Region 1 - RiPP-like

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Location: 1 - 8,389 nt. (total: 8,389 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaHMPMLPCN_8 - Region 1 - T3PKS

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Location: 1 - 40,167 nt. (total: 40,167 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMPMLPCN_10 - Region 1 - hglE-KS

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Location: 1 - 27,129 nt. (total: 27,129 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg10_10

PKS_AT (30..322): mxmal

ATSignature: (unknown)

No matches above 50%

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 21.7
Methylmalonyl-CoA: 17.9
Malonyl-CoA: 10.8
Propionyl-CoA: 10.6
trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

gnlProkkaHMPMLPCN_58 - Region 1 - RiPP-like

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Location: 23,307 - 33,579 nt. (total: 10,273 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMPMLPCN_58 - Region 2 - RiPP-like

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Location: 106,717 - 116,948 nt. (total: 10,232 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHMPMLPCN_59 - Region 1 - RiPP-like

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Location: 91,626 - 108,621 nt. (total: 16,996 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.