GCA_009717475.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJJPAMAED_11 (original name was: gnl|Prokka|JJPAMAED_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	T3PKS	320,742	361,908
Region 11.2	lassopeptide	392,298	414,733

gnlProkkaJJPAMAED_31 (original name was: gnl|Prokka|JJPAMAED_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	RiPP-like	129,354	141,450	quinolidomicin A	Polyketide	3%

gnlProkkaJJPAMAED_34 (original name was: gnl|Prokka|JJPAMAED_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	RiPP-like	46,793	56,993
Region 34.2	RiPP-like	128,530	138,763

gnlProkkaJJPAMAED_35 (original name was: gnl|Prokka|JJPAMAED_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RiPP-like	123,335	135,500

Region	Type	From	To	Most similar known cluster	Similarity
Region 11.1	T3PKS	320,742	361,908
Region 11.2	lassopeptide	392,298	414,733
Region 31.1	RiPP-like	129,354	141,450	quinolidomicin A	Polyketide	3%
Region 34.1	RiPP-like	46,793	56,993
Region 34.2	RiPP-like	128,530	138,763
Region 35.1	RiPP-like	123,335	135,500

No secondary metabolite regions were found in these records:: gnlProkkaJJPAMAED_1 (original name was: gnl|Prokka|JJPAMAED_1); gnlProkkaJJPAMAED_2 (original name was: gnl|Prokka|JJPAMAED_2); gnlProkkaJJPAMAED_3 (original name was: gnl|Prokka|JJPAMAED_3); gnlProkkaJJPAMAED_4 (original name was: gnl|Prokka|JJPAMAED_4); gnlProkkaJJPAMAED_5 (original name was: gnl|Prokka|JJPAMAED_5); gnlProkkaJJPAMAED_6 (original name was: gnl|Prokka|JJPAMAED_6); gnlProkkaJJPAMAED_7 (original name was: gnl|Prokka|JJPAMAED_7); gnlProkkaJJPAMAED_8 (original name was: gnl|Prokka|JJPAMAED_8); gnlProkkaJJPAMAED_9 (original name was: gnl|Prokka|JJPAMAED_9); gnlProkkaJJPAMAED_10 (original name was: gnl|Prokka|JJPAMAED_10); gnlProkkaJJPAMAED_12 (original name was: gnl|Prokka|JJPAMAED_12); gnlProkkaJJPAMAED_13 (original name was: gnl|Prokka|JJPAMAED_13); gnlProkkaJJPAMAED_14 (original name was: gnl|Prokka|JJPAMAED_14); gnlProkkaJJPAMAED_15 (original name was: gnl|Prokka|JJPAMAED_15); gnlProkkaJJPAMAED_16 (original name was: gnl|Prokka|JJPAMAED_16); gnlProkkaJJPAMAED_17 (original name was: gnl|Prokka|JJPAMAED_17); gnlProkkaJJPAMAED_18 (original name was: gnl|Prokka|JJPAMAED_18); gnlProkkaJJPAMAED_19 (original name was: gnl|Prokka|JJPAMAED_19); gnlProkkaJJPAMAED_20 (original name was: gnl|Prokka|JJPAMAED_20); gnlProkkaJJPAMAED_21 (original name was: gnl|Prokka|JJPAMAED_21); gnlProkkaJJPAMAED_22 (original name was: gnl|Prokka|JJPAMAED_22); gnlProkkaJJPAMAED_23 (original name was: gnl|Prokka|JJPAMAED_23); gnlProkkaJJPAMAED_24 (original name was: gnl|Prokka|JJPAMAED_24); gnlProkkaJJPAMAED_25 (original name was: gnl|Prokka|JJPAMAED_25); gnlProkkaJJPAMAED_26 (original name was: gnl|Prokka|JJPAMAED_26); gnlProkkaJJPAMAED_27 (original name was: gnl|Prokka|JJPAMAED_27); gnlProkkaJJPAMAED_28 (original name was: gnl|Prokka|JJPAMAED_28); gnlProkkaJJPAMAED_29 (original name was: gnl|Prokka|JJPAMAED_29); gnlProkkaJJPAMAED_30 (original name was: gnl|Prokka|JJPAMAED_30); gnlProkkaJJPAMAED_32 (original name was: gnl|Prokka|JJPAMAED_32); gnlProkkaJJPAMAED_33 (original name was: gnl|Prokka|JJPAMAED_33); gnlProkkaJJPAMAED_36 (original name was: gnl|Prokka|JJPAMAED_36)

Compact view

gnlProkkaJJPAMAED_11 - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 320,742 - 361,908 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJJPAMAED_11 - Region 2 - lassopeptide

Download region GenBank file

Download region SVG

Location: 392,298 - 414,733 nt. (total: 22,436 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Lasso peptides

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lasso peptide predictions

Lassopeptides - No core peptides found.

Lasso peptides

Core peptide predictions

No core peptides found.

gnlProkkaJJPAMAED_31 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 129,354 - 141,450 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaJJPAMAED_34 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 46,793 - 56,993 nt. (total: 10,201 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJJPAMAED_34 - Region 2 - RiPP-like

Download region GenBank file

Download region SVG

Location: 128,530 - 138,763 nt. (total: 10,234 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJJPAMAED_35 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 123,335 - 135,500 nt. (total: 12,166 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.