Select genomic region:
Overview
25.1
27.1
29.1
33.1
33.2
35.1
37.1
38.1
46.1
53.1
55.1
64.1
121.1

### Identified primary metabolite regions

c00025_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_25)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 25.1 | GR_eut-pdu-related | Putative | 6,144 | 42,248 | Propanediol degradation S. enterica | PDU | 41%

c00027_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_27)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 27.1 | Acetyl-CoA_pathway | SCFA | 28,598 | 62,740 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%

c00029_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_29)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 29.1 | TPP_AA_metabolism | Putative | 53,069 | 81,804 |

c00033_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_33)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 33.1 | PFOR_II_pathway | SCFA | 77,136 | 100,672 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 33.2 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 105,065 | 142,811 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

c00035_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_35)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 35.1 | Putrescine2spermidine | Aliphatic_amine | 11,067 | 34,315 | Putrescine2spermidine E. rectale | SPRM | 100%

c00037_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_37)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 37.1 | Rnf_complex | E-MGC | 21,293 | 46,304 | Rnf complex C. sporogenes | RNF | 100%

c00038_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_38)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 38.1 | Rnf_complex | E-MGC | 1 | 25,773 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

c00046_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_46)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 46.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 12,417 | 45,444 |

c00053_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_53)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 53.1 | succinate2propionate | SCFA | 5,541 | 30,863 | Succinate to propionate B. theta | PRO | 33%

c00055_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_55)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 55.1 | Others_HGD_unassigned | Putative | 2,874 | 25,817 |

c00064_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_64)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 64.1 | Fumarate2succinate | SCFA | 1 | 20,280 |

c00121_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_121)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 121.1 | Fumarate2succinate | SCFA | 80,339 | 97,632 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 25.1 | GR_eut-pdu-related | Putative | 6,144 | 42,248 | Propanediol degradation S. enterica | PDU | 41%
Region 27.1 | Acetyl-CoA_pathway | SCFA | 28,598 | 62,740 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%
Region 29.1 | TPP_AA_metabolism | Putative | 53,069 | 81,804 |
Region 33.1 | PFOR_II_pathway | SCFA | 77,136 | 100,672 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 33.2 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 105,065 | 142,811 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 35.1 | Putrescine2spermidine | Aliphatic_amine | 11,067 | 34,315 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 37.1 | Rnf_complex | E-MGC | 21,293 | 46,304 | Rnf complex C. sporogenes | RNF | 100%
Region 38.1 | Rnf_complex | E-MGC | 1 | 25,773 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%
Region 46.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 12,417 | 45,444 |
Region 53.1 | succinate2propionate | SCFA | 5,541 | 30,863 | Succinate to propionate B. theta | PRO | 33%
Region 55.1 | Others_HGD_unassigned | Putative | 2,874 | 25,817 |
Region 64.1 | Fumarate2succinate | SCFA | 1 | 20,280 |
Region 121.1 | Fumarate2succinate | SCFA | 80,339 | 97,632 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_24)
  c00026_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_26)
  c00028_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_28)
  c00030_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_32)
  c00034_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_34)
  c00036_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_36)
  c00039_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_45)
  c00047_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_52)
  c00054_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_54)
  c00056_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_63)
  c00065_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|PKFBPKFJ_120)

Compact view
c00025_gnlPro.. - Region 1 - GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,144 - 42,248 nt. (total: 36,105 nt) Show pHMM detection rules used
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00027_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 28,598 - 62,740 nt. (total: 34,143 nt) Show pHMM detection rules used
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00029_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 53,069 - 81,804 nt. (total: 28,736 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00033_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 77,136 - 100,672 nt. (total: 23,537 nt) Show pHMM detection rules used
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00033_gnlPro.. - Region 2 - GR_AA_metabolism,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 105,065 - 142,811 nt. (total: 37,747 nt) Show pHMM detection rules used
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00035_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 11,067 - 34,315 nt. (total: 23,249 nt) Show pHMM detection rules used
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00037_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 21,293 - 46,304 nt. (total: 25,012 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00038_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 25,773 nt. (total: 25,773 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00046_gnlPro.. - Region 1 - Others_HGD_unassigned,TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 12,417 - 45,444 nt. (total: 33,028 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00053_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 5,541 - 30,863 nt. (total: 25,323 nt) Show pHMM detection rules used
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00055_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 2,874 - 25,817 nt. (total: 22,944 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00064_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 20,280 nt. (total: 20,280 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00121_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 80,339 - 97,632 nt. (total: 17,294 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.