GCA_011040375.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFBIBCCGH_1 (original name was: gnl|Prokka|FBIBCCGH_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	81,400	105,642

gnlProkkaFBIBCCGH_8 (original name was: gnl|Prokka|FBIBCCGH_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS	1	27,046	mutanocyclin/leuvalin/tyrvalin	NRP	30%

gnlProkkaFBIBCCGH_22 (original name was: gnl|Prokka|FBIBCCGH_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	238,722	249,612

gnlProkkaFBIBCCGH_55 (original name was: gnl|Prokka|FBIBCCGH_55)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	terpene	88,535	109,416

gnlProkkaFBIBCCGH_67 (original name was: gnl|Prokka|FBIBCCGH_67)

Region	Type	From	To	Most similar known cluster		Similarity
Region 67.1	cyclic-lactone-autoinducer	1	4,542

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	81,400	105,642
Region 8.1	NRPS	1	27,046	mutanocyclin/leuvalin/tyrvalin	NRP	30%
Region 22.1	RiPP-like	238,722	249,612
Region 55.1	terpene	88,535	109,416
Region 67.1	cyclic-lactone-autoinducer	1	4,542

Compact view

gnlProkkaFBIBCCGH_1 - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 81,400 - 105,642 nt. (total: 24,243 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFBIBCCGH_8 - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 1 - 27,046 nt. (total: 27,046 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 27046:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg8_6

Search NORINE for peptide: strict or relaxed

AMP-binding (447..839): Thr

nrpys: Thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: thr (Thr)
Single AA prediction:: thr (Thr)

Stachelhaus prediction details:

Stachelhaus sequence:: DYFTLGLVVK
Nearest Stachelhaus code(s):: Leu DYFTFGLIIK (68% 8Å match); OMe-Trp DAFTLGCVFK (56% 8Å match)
Stachelhaus code match:: 70% (weak)

gnlProkkaFBIBCCGH_22 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 238,722 - 249,612 nt. (total: 10,891 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFBIBCCGH_55 - Region 1 - terpene

Download region GenBank file

Download region SVG

Location: 88,535 - 109,416 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFBIBCCGH_67 - Region 1 - cyclic-lactone-autoinducer

Download region GenBank file

Download region SVG

Location: 1 - 4,542 nt. (total: 4,542 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.