GCA_013204895.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLBNGKJKJ_2 (original name was: gnl|Prokka|LBNGKJKJ_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS-like	51,015	93,324	nosiheptide	RiPP:Thiopeptide	7%

gnlProkkaLBNGKJKJ_5 (original name was: gnl|Prokka|LBNGKJKJ_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	81,715	92,107

gnlProkkaLBNGKJKJ_20 (original name was: gnl|Prokka|LBNGKJKJ_20)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	lanthipeptide-class-i	394	17,030

gnlProkkaLBNGKJKJ_22 (original name was: gnl|Prokka|LBNGKJKJ_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	RiPP-like	4,837	15,256

No secondary metabolite regions were found in these records:: gnlProkkaLBNGKJKJ_3 (original name was: gnl|Prokka|LBNGKJKJ_3); gnlProkkaLBNGKJKJ_4 (original name was: gnl|Prokka|LBNGKJKJ_4); gnlProkkaLBNGKJKJ_6 (original name was: gnl|Prokka|LBNGKJKJ_6); gnlProkkaLBNGKJKJ_7 (original name was: gnl|Prokka|LBNGKJKJ_7); gnlProkkaLBNGKJKJ_9 (original name was: gnl|Prokka|LBNGKJKJ_9); gnlProkkaLBNGKJKJ_10 (original name was: gnl|Prokka|LBNGKJKJ_10); gnlProkkaLBNGKJKJ_11 (original name was: gnl|Prokka|LBNGKJKJ_11); gnlProkkaLBNGKJKJ_12 (original name was: gnl|Prokka|LBNGKJKJ_12); gnlProkkaLBNGKJKJ_13 (original name was: gnl|Prokka|LBNGKJKJ_13); gnlProkkaLBNGKJKJ_14 (original name was: gnl|Prokka|LBNGKJKJ_14); gnlProkkaLBNGKJKJ_15 (original name was: gnl|Prokka|LBNGKJKJ_15); gnlProkkaLBNGKJKJ_16 (original name was: gnl|Prokka|LBNGKJKJ_16); gnlProkkaLBNGKJKJ_17 (original name was: gnl|Prokka|LBNGKJKJ_17); gnlProkkaLBNGKJKJ_18 (original name was: gnl|Prokka|LBNGKJKJ_18); gnlProkkaLBNGKJKJ_19 (original name was: gnl|Prokka|LBNGKJKJ_19); gnlProkkaLBNGKJKJ_21 (original name was: gnl|Prokka|LBNGKJKJ_21); gnlProkkaLBNGKJKJ_23 (original name was: gnl|Prokka|LBNGKJKJ_23); gnlProkkaLBNGKJKJ_24 (original name was: gnl|Prokka|LBNGKJKJ_24); gnlProkkaLBNGKJKJ_25 (original name was: gnl|Prokka|LBNGKJKJ_25); gnlProkkaLBNGKJKJ_26 (original name was: gnl|Prokka|LBNGKJKJ_26); gnlProkkaLBNGKJKJ_27 (original name was: gnl|Prokka|LBNGKJKJ_27); gnlProkkaLBNGKJKJ_28 (original name was: gnl|Prokka|LBNGKJKJ_28); gnlProkkaLBNGKJKJ_29 (original name was: gnl|Prokka|LBNGKJKJ_29); gnlProkkaLBNGKJKJ_30 (original name was: gnl|Prokka|LBNGKJKJ_30); gnlProkkaLBNGKJKJ_31 (original name was: gnl|Prokka|LBNGKJKJ_31); gnlProkkaLBNGKJKJ_32 (original name was: gnl|Prokka|LBNGKJKJ_32); gnlProkkaLBNGKJKJ_33 (original name was: gnl|Prokka|LBNGKJKJ_33); gnlProkkaLBNGKJKJ_34 (original name was: gnl|Prokka|LBNGKJKJ_34); gnlProkkaLBNGKJKJ_35 (original name was: gnl|Prokka|LBNGKJKJ_35); gnlProkkaLBNGKJKJ_36 (original name was: gnl|Prokka|LBNGKJKJ_36); gnlProkkaLBNGKJKJ_37 (original name was: gnl|Prokka|LBNGKJKJ_37); gnlProkkaLBNGKJKJ_38 (original name was: gnl|Prokka|LBNGKJKJ_38); gnlProkkaLBNGKJKJ_39 (original name was: gnl|Prokka|LBNGKJKJ_39); gnlProkkaLBNGKJKJ_40 (original name was: gnl|Prokka|LBNGKJKJ_40); gnlProkkaLBNGKJKJ_41 (original name was: gnl|Prokka|LBNGKJKJ_41); gnlProkkaLBNGKJKJ_42 (original name was: gnl|Prokka|LBNGKJKJ_42); gnlProkkaLBNGKJKJ_43 (original name was: gnl|Prokka|LBNGKJKJ_43); gnlProkkaLBNGKJKJ_45 (original name was: gnl|Prokka|LBNGKJKJ_45); gnlProkkaLBNGKJKJ_56 (original name was: gnl|Prokka|LBNGKJKJ_56); gnlProkkaLBNGKJKJ_65 (original name was: gnl|Prokka|LBNGKJKJ_65); gnlProkkaLBNGKJKJ_66 (original name was: gnl|Prokka|LBNGKJKJ_66); gnlProkkaLBNGKJKJ_67 (original name was: gnl|Prokka|LBNGKJKJ_67)

Compact view

gnlProkkaLBNGKJKJ_2 - Region 1 - NRPS-like

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Location: 51,015 - 93,324 nt. (total: 42,310 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg1_48

AMP-binding (14..217): X

nrpys: (unknown)

SVM prediction details:

NOTE: uncertain match

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFF------K
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaLBNGKJKJ_5 - Region 1 - RiPP-like

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Location: 81,715 - 92,107 nt. (total: 10,393 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLBNGKJKJ_20 - Region 1 - lanthipeptide-class-i

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Location: 394 - 17,030 nt. (total: 16,637 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaLBNGKJKJ_22 - Region 1 - RiPP-like

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Location: 4,837 - 15,256 nt. (total: 10,420 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.