Select genomic region:
Overview
10.1
43.1
43.2
54.1
64.1
72.1
79.1
84.1
97.1
99.1
122.1

### Identified primary metabolite regions

c00010_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_10)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | Acetyl-CoA_pathway | SCFA | 32,457 | 66,535 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%

c00043_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_43)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 43.1 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 1 | 28,155 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 43.2 | PFOR_II_pathway | SCFA | 32,199 | 55,735 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00054_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_54)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 54.1 | Putrescine2spermidine | Aliphatic_amine | 3,514 | 26,762 | Putrescine2spermidine E. rectale | SPRM | 100%

c00064_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_76)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 64.1 | TPP_AA_metabolism | Putative | 24,829 | 50,366 |

c00072_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_142)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 72.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 1 | 33,201 |

c00079_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_149)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 79.1 | GR_eut-pdu-related | Putative | 121,462 | 146,522 | Trimethylamine synthesis C. sporogenes | TMA | 50%

c00084_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_154)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 84.1 | Rnf_complex | E-MGC | 17,606 | 41,069 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

c00097_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_167)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 97.1 | Others_HGD_unassigned | Putative | 4,799 | 27,742 |

c00099_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_169)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 99.1 | Rnf_complex | E-MGC | 7,131 | 30,262 | Rnf complex C. sporogenes | RNF | 100%

c00122_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_192)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 122.1 | succinate2propionate | SCFA | 1 | 14,501 | Succinate to propionate B. theta | PRO | 33%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | Acetyl-CoA_pathway | SCFA | 32,457 | 66,535 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%
Region 43.1 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 1 | 28,155 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 43.2 | PFOR_II_pathway | SCFA | 32,199 | 55,735 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 54.1 | Putrescine2spermidine | Aliphatic_amine | 3,514 | 26,762 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 64.1 | TPP_AA_metabolism | Putative | 24,829 | 50,366 |
Region 72.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 1 | 33,201 |
Region 79.1 | GR_eut-pdu-related | Putative | 121,462 | 146,522 | Trimethylamine synthesis C. sporogenes | TMA | 50%
Region 84.1 | Rnf_complex | E-MGC | 17,606 | 41,069 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%
Region 97.1 | Others_HGD_unassigned | Putative | 4,799 | 27,742 |
Region 99.1 | Rnf_complex | E-MGC | 7,131 | 30,262 | Rnf complex C. sporogenes | RNF | 100%
Region 122.1 | succinate2propionate | SCFA | 1 | 14,501 | Succinate to propionate B. theta | PRO | 33%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_9)
  c00011_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_42)
  c00044_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_53)
  c00055_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_65)
  c00065_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_87)
  c00066_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_97)
  c00067_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_106)
  c00068_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_107)
  c00069_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_118)
  c00070_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_127)
  c00071_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_137)
  c00073_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_143)
  c00074_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_144)
  c00075_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_145)
  c00076_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_146)
  c00077_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_147)
  c00078_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_148)
  c00080_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_150)
  c00081_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_151)
  c00082_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_152)
  c00083_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_153)
  c00085_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_155)
  c00086_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_156)
  c00087_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_157)
  c00088_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_158)
  c00089_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_159)
  c00090_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_160)
  c00091_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_161)
  c00092_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_162)
  c00093_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_163)
  c00094_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_164)
  c00095_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_165)
  c00096_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_166)
  c00098_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_168)
  c00100_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_170)
  c00101_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_171)
  c00102_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_172)
  c00103_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_173)
  c00104_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_174)
  c00105_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_175)
  c00106_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_176)
  c00107_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_177)
  c00108_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_178)
  c00109_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_179)
  c00110_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_180)
  c00111_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_181)
  c00112_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_182)
  c00113_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_183)
  c00114_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_184)
  c00115_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_185)
  c00116_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_186)
  c00117_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_187)
  c00118_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_188)
  c00119_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_189)
  c00120_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_190)
  c00121_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_191)
  c00123_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_193)
  c00124_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_194)
  c00125_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_195)
  c00126_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_196)
  c00127_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_197)
  c00128_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_198)
  c00129_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_199)
  c00130_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_200)
  c00131_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_201)
  c00132_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_202)
  c00133_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_203)
  c00134_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_204)
  c00135_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_205)
  c00136_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_206)
  c00137_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_207)
  c00138_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_208)
  c00139_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_209)
  c00140_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_210)
  c00141_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_211)
  c00142_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_212)
  c00143_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_213)
  c00144_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_214)
  c00145_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_215)
  c00146_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_216)
  c00147_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_217)
  c00148_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_218)
  c00149_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_219)
  c00150_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_220)
  c00151_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_221)
  c00152_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_222)
  c00153_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_223)
  c00154_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_224)
  c00155_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_225)
  c00156_gnlPro.. (original name was: gnl|Prokka|FMMLBEED_226)

Compact view
c00010_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 32,457 - 66,535 nt. (total: 34,079 nt) Show pHMM detection rules used
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00043_gnlPro.. - Region 1 - GR_AA_metabolism,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 28,155 nt. (total: 28,155 nt) Show pHMM detection rules used
Region on contig edge.
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00043_gnlPro.. - Region 2 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 32,199 - 55,735 nt. (total: 23,537 nt) Show pHMM detection rules used
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00054_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 3,514 - 26,762 nt. (total: 23,249 nt) Show pHMM detection rules used
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00064_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 24,829 - 50,366 nt. (total: 25,538 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00072_gnlPro.. - Region 1 - Others_HGD_unassigned,TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 33,201 nt. (total: 33,201 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00079_gnlPro.. - Region 1 - GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 121,462 - 146,522 nt. (total: 25,061 nt) Show pHMM detection rules used
Region on contig edge.
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00084_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 17,606 - 41,069 nt. (total: 23,464 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00097_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 4,799 - 27,742 nt. (total: 22,944 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00099_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 7,131 - 30,262 nt. (total: 23,132 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00122_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,501 nt. (total: 14,501 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.