GCA_014863965.1 - 3 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	PFOR_II_pathway	SCFA	90,163	113,723	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00011_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Others_HGD_unassigned	Putative	1,449	25,695

c00037_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Pyruvate2acetate-formate	SCFA	66,975	89,967	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_2); c00003_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_3); c00004_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_4); c00005_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_5); c00006_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_6); c00007_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_7); c00008_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_8); c00009_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_9); c00010_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_10); c00012_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_12); c00013_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_13); c00014_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_14); c00015_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_15); c00016_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_16); c00017_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_17); c00018_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_18); c00019_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_19); c00020_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_20); c00021_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_21); c00022_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_22); c00023_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_23); c00024_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_24); c00025_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_25); c00026_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_26); c00027_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_27); c00028_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_28); c00029_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_29); c00030_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_30); c00031_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_31); c00032_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_32); c00033_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_33); c00034_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_34); c00035_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_35); c00036_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_36); c00038_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_38); c00039_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_39); c00040_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_40); c00041_gnlPro.. (original name was: gnl|Prokka|PLAHELAB_41)

Compact view

c00001_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 90,163 - 113,723 nt. (total: 23,561 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00011_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1,449 - 25,695 nt. (total: 24,247 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00037_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 66,975 - 89,967 nt. (total: 22,993 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters