GCA_014864845.1 - 7 region(s)

Identified primary metabolite regions

c00033_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_33)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Pyruvate2acetate-formate	SCFA	23,402	40,955	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00037_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	490	31,681	Putrescine2spermidine E. rectale	SPRM	100%

c00050_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_50)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	porA	SCFA	1	15,548	Ethanolamine degradation S. typhimurium	EUT	15%

c00069_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_69)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	Rnf_complex	E-MGC	1	17,651	Rnf complex C. sporogenes	RNF	83%

c00104_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_104)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 104.1	Others_HGD_unassigned	Putative	1	12,140

c00105_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_105)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 105.1	acetate2butyrate	SCFA	1	17,697	Acetate to butyrate C. sporogenes	BUT	83%

c00111_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_111)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 111.1	succinate2propionate	SCFA	1	11,411	Succinate to propionate B. theta	PRO	33%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_1); c00002_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_2); c00003_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_3); c00004_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_4); c00005_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_5); c00006_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_6); c00007_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_7); c00008_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_8); c00009_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_9); c00010_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_10); c00011_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_11); c00012_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_12); c00013_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_13); c00014_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_14); c00015_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_15); c00016_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_16); c00017_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_17); c00018_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_18); c00019_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_19); c00020_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_20); c00021_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_21); c00022_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_22); c00023_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_23); c00024_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_24); c00025_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_25); c00026_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_26); c00027_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_27); c00028_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_28); c00029_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_29); c00030_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_30); c00031_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_31); c00032_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_32); c00034_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_34); c00035_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_35); c00036_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_36); c00038_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_38); c00039_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_39); c00040_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_40); c00041_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_41); c00042_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_42); c00043_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_43); c00044_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_44); c00045_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_45); c00046_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_46); c00047_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_47); c00048_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_48); c00049_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_49); c00051_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_51); c00052_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_52); c00053_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_53); c00054_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_54); c00055_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_55); c00056_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_56); c00057_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_57); c00058_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_58); c00059_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_59); c00060_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_60); c00061_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_61); c00062_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_62); c00063_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_63); c00064_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_64); c00065_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_65); c00066_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_66); c00067_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_67); c00068_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_68); c00070_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_70); c00071_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_71); c00072_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_72); c00073_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_73); c00074_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_74); c00075_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_75); c00076_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_76); c00077_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_77); c00078_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_78); c00079_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_79); c00080_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_80); c00081_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_81); c00082_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_82); c00083_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_83); c00084_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_84); c00085_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_85); c00086_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_86); c00087_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_87); c00088_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_88); c00089_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_89); c00090_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_90); c00091_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_91); c00092_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_92); c00093_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_93); c00094_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_94); c00095_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_95); c00096_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_96); c00097_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_97); c00098_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_98); c00099_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_99); c00100_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_100); c00101_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_101); c00102_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_102); c00103_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_103); c00106_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_106); c00107_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_107); c00108_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_108); c00109_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_109); c00110_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_110); c00112_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_112); c00113_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_113); c00114_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_114); c00115_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_115); c00116_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_116); c00117_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_117); c00118_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_118); c00119_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_119); c00120_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_120); c00121_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_121); c00122_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_122); c00123_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_123); c00124_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_124); c00125_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_125); c00126_gnlPro.. (original name was: gnl|Prokka|JNBILIEM_126)

Compact view

c00033_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 23,402 - 40,955 nt. (total: 17,554 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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KnownClusterBlast

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c00037_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine

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Location: 490 - 31,681 nt. (total: 31,192 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00050_gnlPro.. - Region 1 - porA

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Location: 1 - 15,548 nt. (total: 15,548 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance genes

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electron transport genes

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KnownClusterBlast

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c00069_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,651 nt. (total: 17,651 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00104_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 12,140 nt. (total: 12,140 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00105_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1 - 17,697 nt. (total: 17,697 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00111_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 11,411 nt. (total: 11,411 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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