GCA_014868765.1 - 7 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Putrescine2spermidine	Aliphatic_amine	111,916	125,352	Arginine2putrescine R. gnavus	PUTR	60%

c00013_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Others_HGD_unassigned	Putative	7,421	38,358

c00019_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Pyruvate2acetate-formate	SCFA	1	3,525	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00071_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_71)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	acetate2butyrate	SCFA	211	26,453	Acetate to butyrate C. sporogenes	BUT	100%

c00090_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_90)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 90.1	TPP_AA_metabolism	Putative	1	13,652	Threonine to propionate E. coli	PROP	20%

c00115_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_115)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 115.1	Rnf_complex	E-MGC	29,366	54,424	Rnf complex C. sporogenes	RNF	83%

c00121_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_121)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 121.1	Putrescine2spermidine	Aliphatic_amine	1	8,416	Arginine2putrescine R. gnavus	PUTR	40%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_2); c00003_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_3); c00004_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_4); c00005_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_5); c00006_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_6); c00007_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_7); c00008_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_8); c00009_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_9); c00010_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_10); c00011_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_11); c00012_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_12); c00014_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_14); c00015_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_15); c00016_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_16); c00017_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_17); c00018_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_18); c00020_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_20); c00021_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_21); c00022_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_22); c00023_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_23); c00024_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_24); c00025_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_25); c00026_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_26); c00027_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_27); c00028_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_28); c00029_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_29); c00030_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_30); c00031_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_31); c00032_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_32); c00033_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_33); c00034_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_34); c00035_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_35); c00036_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_36); c00037_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_37); c00038_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_38); c00039_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_39); c00040_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_40); c00041_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_41); c00042_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_42); c00043_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_43); c00044_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_44); c00045_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_45); c00046_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_46); c00047_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_47); c00048_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_48); c00049_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_49); c00050_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_50); c00051_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_51); c00052_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_52); c00053_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_53); c00054_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_54); c00055_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_55); c00056_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_56); c00057_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_57); c00058_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_58); c00059_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_59); c00060_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_60); c00061_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_61); c00062_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_62); c00063_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_63); c00064_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_64); c00065_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_65); c00066_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_66); c00067_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_67); c00068_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_68); c00069_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_69); c00070_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_70); c00072_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_72); c00073_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_73); c00074_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_74); c00075_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_75); c00076_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_76); c00077_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_77); c00078_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_78); c00079_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_79); c00080_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_80); c00081_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_81); c00082_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_82); c00083_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_83); c00084_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_84); c00085_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_85); c00086_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_86); c00087_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_87); c00088_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_88); c00089_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_89); c00091_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_91); c00092_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_92); c00093_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_93); c00094_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_94); c00095_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_95); c00096_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_96); c00097_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_97); c00098_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_98); c00099_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_99); c00100_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_100); c00101_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_101); c00102_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_102); c00103_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_103); c00104_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_104); c00105_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_105); c00106_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_106); c00107_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_107); c00108_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_108); c00109_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_109); c00110_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_110); c00111_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_111); c00112_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_112); c00113_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_113); c00114_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_114); c00116_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_116); c00117_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_117); c00118_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_118); c00119_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_119); c00120_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_120); c00122_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_122); c00123_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_123); c00124_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_124); c00125_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_125); c00126_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_126); c00127_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_127); c00128_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_128); c00129_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_129); c00130_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_130); c00131_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_131); c00132_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_132); c00133_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_133); c00134_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_134); c00135_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_135); c00136_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_136); c00137_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_137); c00138_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_138); c00139_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_139); c00140_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_140); c00141_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_141); c00142_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_142); c00143_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_143); c00144_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_144); c00145_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_145); c00146_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_146); c00147_gnlPro.. (original name was: gnl|Prokka|ADNJJMLP_147)

Compact view

c00001_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 111,916 - 125,352 nt. (total: 13,437 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00013_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 7,421 - 38,358 nt. (total: 30,938 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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No matches found.

c00019_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 3,525 nt. (total: 3,525 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00071_gnlPro.. - Region 1 - acetate2butyrate

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Location: 211 - 26,453 nt. (total: 26,243 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00090_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 13,652 nt. (total: 13,652 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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c00115_gnlPro.. - Region 1 - Rnf_complex

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Location: 29,366 - 54,424 nt. (total: 25,059 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00121_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1 - 8,416 nt. (total: 8,416 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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