GCA_015547795.1 - 8 region(s)

Identified primary metabolite regions

c00013_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Rnf_complex	E-MGC	29,237	54,297	Rnf complex C. sporogenes	RNF	83%

c00016_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	OD_unknown	Putative	4,974	31,436

c00023_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	porA	SCFA	16,669	39,504	porA C. sporogenes	POR	60%

c00024_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	TPP_AA_metabolism	Putative	1	17,927

c00037_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	succinate2propionate	SCFA	9,585	34,112	Succinate to propionate B. theta	PRO	50%

c00054_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_54)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Fumarate2succinate	SCFA	1	12,725	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00055_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Pyruvate2acetate-formate	SCFA	44,167	67,142	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00066_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	Arginine2putrescine	Aliphatic_amine	101,126	130,398

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_1); c00002_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_2); c00003_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_3); c00004_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_4); c00005_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_5); c00006_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_6); c00007_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_7); c00008_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_8); c00009_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_9); c00010_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_10); c00011_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_11); c00012_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_12); c00014_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_14); c00015_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_15); c00017_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_17); c00018_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_18); c00019_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_19); c00020_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_20); c00021_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_21); c00022_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_22); c00025_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_25); c00026_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_26); c00027_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_27); c00028_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_28); c00029_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_29); c00030_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_30); c00031_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_31); c00032_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_32); c00033_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_33); c00034_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_34); c00035_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_35); c00036_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_36); c00038_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_38); c00039_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_39); c00040_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_40); c00041_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_41); c00042_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_42); c00043_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_43); c00044_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_44); c00045_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_45); c00046_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_46); c00047_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_47); c00048_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_48); c00049_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_49); c00050_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_50); c00051_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_51); c00052_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_52); c00053_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_53); c00056_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_56); c00057_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_57); c00058_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_58); c00059_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_59); c00060_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_60); c00061_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_61); c00062_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_62); c00063_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_63); c00064_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_64); c00065_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_65); c00067_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_67); c00068_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_68); c00069_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_69); c00070_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_70); c00071_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_71); c00072_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_72); c00073_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_73); c00074_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_74); c00075_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_75); c00076_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_76); c00077_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_77); c00078_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_78); c00079_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_79); c00080_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_80); c00081_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_81); c00082_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_82); c00083_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_83); c00084_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_84); c00085_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_85); c00086_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_86); c00087_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_87); c00088_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_88); c00089_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_89); c00090_gnlPro.. (original name was: gnl|Prokka|LMDLCLFI_90)

Compact view

c00013_gnlPro.. - Region 1 - Rnf_complex

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Location: 29,237 - 54,297 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00016_gnlPro.. - Region 1 - OD_unknown

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Location: 4,974 - 31,436 nt. (total: 26,463 nt) Show pHMM detection rules used

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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No matches found.

c00023_gnlPro.. - Region 1 - porA

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Location: 16,669 - 39,504 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00024_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 17,927 nt. (total: 17,927 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00037_gnlPro.. - Region 1 - succinate2propionate

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Location: 9,585 - 34,112 nt. (total: 24,528 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00054_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 12,725 nt. (total: 12,725 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00055_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 44,167 - 67,142 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00066_gnlPro.. - Region 1 - Arginine2putrescine

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Location: 101,126 - 130,398 nt. (total: 29,273 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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resistance genes

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No matches found.