Select genomic region:
Overview
1.1
1.2
3.1
4.1
13.1
15.1
17.1
22.1
22.2
33.1
35.1
76.1
84.1

### Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_1)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | PFOR_II_pathway | SCFA | 1 | 23,266 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 1.2 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 29,966 | 67,737 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

c00003_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_3)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 3.1 | Acetyl-CoA_pathway | SCFA | 6,262 | 40,397 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%

c00004_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_4)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 4.1 | Rnf_complex | E-MGC | 43,406 | 68,417 | Rnf complex C. sporogenes | RNF | 100%

c00013_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_13)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | Others_HGD_unassigned | Putative | 29,973 | 52,916 |

c00015_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_15)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 15.1 | TPP_AA_metabolism | Putative | 34,024 | 50,679 |

c00017_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_17)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 17.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 4,035 | 37,249 |

c00022_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_22)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 22.1 | Putrescine2spermidine | Aliphatic_amine | 35,631 | 58,879 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 22.2 | Rnf_complex | E-MGC | 81,124 | 107,658 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

c00033_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_33)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 33.1 | succinate2propionate | SCFA | 1 | 20,895 | Succinate to propionate B. theta | PRO | 33%

c00035_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_35)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 35.1 | Fumarate2succinate | SCFA | 1 | 19,422 |

c00076_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_76)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 76.1 | GR_eut-pdu-related | Putative | 89,691 | 125,800 | Propanediol degradation S. enterica | PDU | 37%

c00084_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_84)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 84.1 | Others_HGD_unassigned | Putative | 106,262 | 119,838 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | PFOR_II_pathway | SCFA | 1 | 23,266 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 1.2 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 29,966 | 67,737 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 3.1 | Acetyl-CoA_pathway | SCFA | 6,262 | 40,397 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 61%
Region 4.1 | Rnf_complex | E-MGC | 43,406 | 68,417 | Rnf complex C. sporogenes | RNF | 100%
Region 13.1 | Others_HGD_unassigned | Putative | 29,973 | 52,916 |
Region 15.1 | TPP_AA_metabolism | Putative | 34,024 | 50,679 |
Region 17.1 | Others_HGD_unassigned,TPP_AA_metabolism | Putative | 4,035 | 37,249 |
Region 22.1 | Putrescine2spermidine | Aliphatic_amine | 35,631 | 58,879 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 22.2 | Rnf_complex | E-MGC | 81,124 | 107,658 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%
Region 33.1 | succinate2propionate | SCFA | 1 | 20,895 | Succinate to propionate B. theta | PRO | 33%
Region 35.1 | Fumarate2succinate | SCFA | 1 | 19,422 |
Region 76.1 | GR_eut-pdu-related | Putative | 89,691 | 125,800 | Propanediol degradation S. enterica | PDU | 37%
Region 84.1 | Others_HGD_unassigned | Putative | 106,262 | 119,838 |

No primary metabolite regions were found in these records:
  c00002_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_2)
  c00005_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_12)
  c00014_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_14)
  c00016_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_16)
  c00018_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_21)
  c00023_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_32)
  c00034_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_34)
  c00036_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_75)
  c00077_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|NCELMIHK_83)

Compact view
c00001_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,266 nt. (total: 23,266 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00001_gnlPro.. - Region 2 - GR_AA_metabolism,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 29,966 - 67,737 nt. (total: 37,772 nt) Show pHMM detection rules used
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00003_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,262 - 40,397 nt. (total: 34,136 nt) Show pHMM detection rules used
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00004_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 43,406 - 68,417 nt. (total: 25,012 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00013_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 29,973 - 52,916 nt. (total: 22,944 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00015_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 34,024 - 50,679 nt. (total: 16,656 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00017_gnlPro.. - Region 1 - Others_HGD_unassigned,TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 4,035 - 37,249 nt. (total: 33,215 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00022_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 35,631 - 58,879 nt. (total: 23,249 nt) Show pHMM detection rules used
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00022_gnlPro.. - Region 2 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 81,124 - 107,658 nt. (total: 26,535 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00033_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 20,895 nt. (total: 20,895 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00035_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 19,422 nt. (total: 19,422 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00076_gnlPro.. - Region 1 - GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 89,691 - 125,800 nt. (total: 36,110 nt) Show pHMM detection rules used
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00084_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 106,262 - 119,838 nt. (total: 13,577 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.