GCA_015558535.1 - 8 region(s)

Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	46,059	69,490	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00011_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	PFOR_II_pathway	SCFA	216,757	240,314	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00014_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	GR_fatty_acids,Pyruvate2acetate-formate	SCFA	3,801	32,426	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00024_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	TPP_AA_metabolism	Putative	25,211	48,226

c00028_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Rnf_complex	E-MGC	10,862	36,096	Rnf complex C. sporogenes	RNF	83%

c00066_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	succinate2propionate	SCFA	25,280	49,988	Succinate to propionate B. theta	PRO	75%
Region 66.2	porA	SCFA	123,014	145,857	porA C. sporogenes	POR	80%

c00077_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_77)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	NADH_dehydrogenase_I	E-MGC	138,998	164,966	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_1); c00002_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_2); c00003_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_3); c00004_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_4); c00005_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_5); c00006_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_6); c00007_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_7); c00008_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_8); c00010_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_10); c00012_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_12); c00013_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_13); c00015_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_15); c00016_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_16); c00017_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_17); c00018_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_18); c00019_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_19); c00020_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_20); c00021_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_21); c00022_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_22); c00023_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_23); c00025_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_25); c00026_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_26); c00027_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_27); c00029_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_29); c00030_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_30); c00031_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_31); c00032_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_32); c00033_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_33); c00034_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_34); c00035_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_35); c00036_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_36); c00037_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_37); c00038_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_38); c00039_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_39); c00040_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_40); c00041_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_41); c00042_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_42); c00043_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_43); c00044_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_44); c00045_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_45); c00046_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_46); c00047_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_47); c00048_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_48); c00049_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_49); c00050_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_50); c00051_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_51); c00052_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_52); c00053_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_53); c00054_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_54); c00055_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_55); c00056_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_56); c00057_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_57); c00058_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_58); c00059_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_59); c00060_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_60); c00061_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_61); c00062_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_62); c00063_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_63); c00064_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_64); c00065_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_65); c00067_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_67); c00068_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_68); c00069_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_69); c00070_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_70); c00071_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_71); c00072_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_72); c00073_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_73); c00074_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_74); c00075_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_75); c00076_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_76); c00078_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_78); c00079_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_79); c00080_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_80); c00081_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_81); c00082_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_82); c00083_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_83); c00084_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_84); c00085_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_85); c00086_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_86); c00087_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_87); c00088_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_88); c00089_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_89); c00090_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_90); c00091_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_91); c00092_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_92); c00093_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_93); c00094_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_94); c00095_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_95); c00096_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_96); c00097_gnlPro.. (original name was: gnl|Prokka|IGBMFMJN_97)

Compact view

c00009_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 46,059 - 69,490 nt. (total: 23,432 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00011_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 216,757 - 240,314 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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c00014_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 3,801 - 32,426 nt. (total: 28,626 nt) Show pHMM detection rules used

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

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c00024_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 25,211 - 48,226 nt. (total: 23,016 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00028_gnlPro.. - Region 1 - Rnf_complex

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Location: 10,862 - 36,096 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00066_gnlPro.. - Region 1 - succinate2propionate

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Location: 25,280 - 49,988 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00066_gnlPro.. - Region 2 - porA

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Location: 123,014 - 145,857 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00077_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 138,998 - 164,966 nt. (total: 25,969 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

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resistance genes

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