GCA_015698145.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPALCAABH_273 (original name was: gnl|Prokka|PALCAABH_273)

Region	Type	From	To	Most similar known cluster		Similarity
Region 121.1	NRPS	1	7,907

gnlProkkaPALCAABH_445 (original name was: gnl|Prokka|PALCAABH_445)

Region	Type	From	To	Most similar known cluster		Similarity
Region 197.1	RiPP-like	11,010	17,491

Region	Type	From	To	Most similar known cluster	Similarity
Region 121.1	NRPS	1	7,907
Region 197.1	RiPP-like	11,010	17,491

Compact view

gnlProkkaPALCAABH_273 - Region 1 - NRPS

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Location: 1 - 7,907 nt. (total: 7,907 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 7907:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg121_6

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AMP-binding (8..390): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSMALVYK
Nearest Stachelhaus code(s):: Ala DVFSVALVYK (71% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaPALCAABH_445 - Region 1 - RiPP-like