GCA_017367105.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGEEKONHA_5 (original name was: gnl|Prokka|GEEKONHA_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RaS-RiPP	47,037	64,106	streptide	RiPP	100%

gnlProkkaGEEKONHA_27 (original name was: gnl|Prokka|GEEKONHA_27)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	RaS-RiPP	1	18,127

gnlProkkaGEEKONHA_41 (original name was: gnl|Prokka|GEEKONHA_41)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	RRE-containing	110,737	131,984

gnlProkkaGEEKONHA_50 (original name was: gnl|Prokka|GEEKONHA_50)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	NRPS-like	1	19,162	asukamycin	Polyketide:Type II polyketide	4%

gnlProkkaGEEKONHA_55 (original name was: gnl|Prokka|GEEKONHA_55)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	lanthipeptide-class-i	9,741	33,794

gnlProkkaGEEKONHA_62 (original name was: gnl|Prokka|GEEKONHA_62)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	RiPP-like	87,229	100,809

No secondary metabolite regions were found in these records:: gnlProkkaGEEKONHA_1 (original name was: gnl|Prokka|GEEKONHA_1); gnlProkkaGEEKONHA_2 (original name was: gnl|Prokka|GEEKONHA_2); gnlProkkaGEEKONHA_3 (original name was: gnl|Prokka|GEEKONHA_3); gnlProkkaGEEKONHA_4 (original name was: gnl|Prokka|GEEKONHA_4); gnlProkkaGEEKONHA_6 (original name was: gnl|Prokka|GEEKONHA_6); gnlProkkaGEEKONHA_7 (original name was: gnl|Prokka|GEEKONHA_7); gnlProkkaGEEKONHA_8 (original name was: gnl|Prokka|GEEKONHA_8); gnlProkkaGEEKONHA_9 (original name was: gnl|Prokka|GEEKONHA_9); gnlProkkaGEEKONHA_10 (original name was: gnl|Prokka|GEEKONHA_10); gnlProkkaGEEKONHA_11 (original name was: gnl|Prokka|GEEKONHA_11); gnlProkkaGEEKONHA_12 (original name was: gnl|Prokka|GEEKONHA_12); gnlProkkaGEEKONHA_14 (original name was: gnl|Prokka|GEEKONHA_14); gnlProkkaGEEKONHA_16 (original name was: gnl|Prokka|GEEKONHA_16); gnlProkkaGEEKONHA_17 (original name was: gnl|Prokka|GEEKONHA_17); gnlProkkaGEEKONHA_18 (original name was: gnl|Prokka|GEEKONHA_18); gnlProkkaGEEKONHA_19 (original name was: gnl|Prokka|GEEKONHA_19); gnlProkkaGEEKONHA_22 (original name was: gnl|Prokka|GEEKONHA_22); gnlProkkaGEEKONHA_23 (original name was: gnl|Prokka|GEEKONHA_23); gnlProkkaGEEKONHA_24 (original name was: gnl|Prokka|GEEKONHA_24); gnlProkkaGEEKONHA_28 (original name was: gnl|Prokka|GEEKONHA_28); gnlProkkaGEEKONHA_29 (original name was: gnl|Prokka|GEEKONHA_29); gnlProkkaGEEKONHA_30 (original name was: gnl|Prokka|GEEKONHA_30); gnlProkkaGEEKONHA_31 (original name was: gnl|Prokka|GEEKONHA_31); gnlProkkaGEEKONHA_32 (original name was: gnl|Prokka|GEEKONHA_32); gnlProkkaGEEKONHA_34 (original name was: gnl|Prokka|GEEKONHA_34); gnlProkkaGEEKONHA_35 (original name was: gnl|Prokka|GEEKONHA_35); gnlProkkaGEEKONHA_36 (original name was: gnl|Prokka|GEEKONHA_36); gnlProkkaGEEKONHA_37 (original name was: gnl|Prokka|GEEKONHA_37); gnlProkkaGEEKONHA_38 (original name was: gnl|Prokka|GEEKONHA_38); gnlProkkaGEEKONHA_39 (original name was: gnl|Prokka|GEEKONHA_39); gnlProkkaGEEKONHA_40 (original name was: gnl|Prokka|GEEKONHA_40); gnlProkkaGEEKONHA_42 (original name was: gnl|Prokka|GEEKONHA_42); gnlProkkaGEEKONHA_43 (original name was: gnl|Prokka|GEEKONHA_43); gnlProkkaGEEKONHA_44 (original name was: gnl|Prokka|GEEKONHA_44); gnlProkkaGEEKONHA_45 (original name was: gnl|Prokka|GEEKONHA_45); gnlProkkaGEEKONHA_46 (original name was: gnl|Prokka|GEEKONHA_46); gnlProkkaGEEKONHA_47 (original name was: gnl|Prokka|GEEKONHA_47); gnlProkkaGEEKONHA_48 (original name was: gnl|Prokka|GEEKONHA_48); gnlProkkaGEEKONHA_49 (original name was: gnl|Prokka|GEEKONHA_49); gnlProkkaGEEKONHA_51 (original name was: gnl|Prokka|GEEKONHA_51); gnlProkkaGEEKONHA_52 (original name was: gnl|Prokka|GEEKONHA_52); gnlProkkaGEEKONHA_53 (original name was: gnl|Prokka|GEEKONHA_53); gnlProkkaGEEKONHA_56 (original name was: gnl|Prokka|GEEKONHA_56); gnlProkkaGEEKONHA_57 (original name was: gnl|Prokka|GEEKONHA_57); gnlProkkaGEEKONHA_58 (original name was: gnl|Prokka|GEEKONHA_58); gnlProkkaGEEKONHA_61 (original name was: gnl|Prokka|GEEKONHA_61); gnlProkkaGEEKONHA_63 (original name was: gnl|Prokka|GEEKONHA_63)

Compact view

gnlProkkaGEEKONHA_5 - Region 1 - RaS-RiPP

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Location: 47,037 - 64,106 nt. (total: 17,070 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGEEKONHA_27 - Region 1 - RaS-RiPP

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Location: 1 - 18,127 nt. (total: 18,127 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGEEKONHA_41 - Region 1 - RRE-containing

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Location: 110,737 - 131,984 nt. (total: 21,248 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGEEKONHA_50 - Region 1 - NRPS-like

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Location: 1 - 19,162 nt. (total: 19,162 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg43_5

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaGEEKONHA_55 - Region 1 - lanthipeptide-class-i

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Location: 9,741 - 33,794 nt. (total: 24,054 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaGEEKONHA_62 - Region 1 - RiPP-like

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Location: 87,229 - 100,809 nt. (total: 13,581 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.