GCA_017367305.1 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDFBKCNKL_1 (original name was: gnl|Prokka|DFBKCNKL_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RaS-RiPP	82,449	103,999

gnlProkkaDFBKCNKL_13 (original name was: gnl|Prokka|DFBKCNKL_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	RaS-RiPP	103,027	126,252

gnlProkkaDFBKCNKL_22 (original name was: gnl|Prokka|DFBKCNKL_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RRE-containing	192,843	213,976

gnlProkkaDFBKCNKL_36 (original name was: gnl|Prokka|DFBKCNKL_36)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	NRPS-like	8,838	51,729	asukamycin	Polyketide:Type II polyketide	4%

gnlProkkaDFBKCNKL_37 (original name was: gnl|Prokka|DFBKCNKL_37)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS-like	1	7,053

gnlProkkaDFBKCNKL_43 (original name was: gnl|Prokka|DFBKCNKL_43)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	lanthipeptide-class-i	1	23,752

gnlProkkaDFBKCNKL_53 (original name was: gnl|Prokka|DFBKCNKL_53)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	RiPP-like	4,842	19,027

gnlProkkaDFBKCNKL_54 (original name was: gnl|Prokka|DFBKCNKL_54)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	RaS-RiPP	254,988	277,412	streptide	RiPP	100%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RaS-RiPP	82,449	103,999
Region 10.1	RaS-RiPP	103,027	126,252
Region 18.1	RRE-containing	192,843	213,976
Region 26.1	NRPS-like	8,838	51,729	asukamycin	Polyketide:Type II polyketide	4%
Region 27.1	NRPS-like	1	7,053
Region 33.1	lanthipeptide-class-i	1	23,752
Region 41.1	RiPP-like	4,842	19,027
Region 42.1	RaS-RiPP	254,988	277,412	streptide	RiPP	100%

No secondary metabolite regions were found in these records:: gnlProkkaDFBKCNKL_2 (original name was: gnl|Prokka|DFBKCNKL_2); gnlProkkaDFBKCNKL_3 (original name was: gnl|Prokka|DFBKCNKL_3); gnlProkkaDFBKCNKL_4 (original name was: gnl|Prokka|DFBKCNKL_4); gnlProkkaDFBKCNKL_5 (original name was: gnl|Prokka|DFBKCNKL_5); gnlProkkaDFBKCNKL_9 (original name was: gnl|Prokka|DFBKCNKL_9); gnlProkkaDFBKCNKL_10 (original name was: gnl|Prokka|DFBKCNKL_10); gnlProkkaDFBKCNKL_11 (original name was: gnl|Prokka|DFBKCNKL_11); gnlProkkaDFBKCNKL_12 (original name was: gnl|Prokka|DFBKCNKL_12); gnlProkkaDFBKCNKL_14 (original name was: gnl|Prokka|DFBKCNKL_14); gnlProkkaDFBKCNKL_15 (original name was: gnl|Prokka|DFBKCNKL_15); gnlProkkaDFBKCNKL_16 (original name was: gnl|Prokka|DFBKCNKL_16); gnlProkkaDFBKCNKL_17 (original name was: gnl|Prokka|DFBKCNKL_17); gnlProkkaDFBKCNKL_19 (original name was: gnl|Prokka|DFBKCNKL_19); gnlProkkaDFBKCNKL_20 (original name was: gnl|Prokka|DFBKCNKL_20); gnlProkkaDFBKCNKL_21 (original name was: gnl|Prokka|DFBKCNKL_21); gnlProkkaDFBKCNKL_23 (original name was: gnl|Prokka|DFBKCNKL_23); gnlProkkaDFBKCNKL_24 (original name was: gnl|Prokka|DFBKCNKL_24); gnlProkkaDFBKCNKL_26 (original name was: gnl|Prokka|DFBKCNKL_26); gnlProkkaDFBKCNKL_27 (original name was: gnl|Prokka|DFBKCNKL_27); gnlProkkaDFBKCNKL_30 (original name was: gnl|Prokka|DFBKCNKL_30); gnlProkkaDFBKCNKL_31 (original name was: gnl|Prokka|DFBKCNKL_31); gnlProkkaDFBKCNKL_34 (original name was: gnl|Prokka|DFBKCNKL_34); gnlProkkaDFBKCNKL_38 (original name was: gnl|Prokka|DFBKCNKL_38); gnlProkkaDFBKCNKL_39 (original name was: gnl|Prokka|DFBKCNKL_39); gnlProkkaDFBKCNKL_40 (original name was: gnl|Prokka|DFBKCNKL_40); gnlProkkaDFBKCNKL_41 (original name was: gnl|Prokka|DFBKCNKL_41); gnlProkkaDFBKCNKL_42 (original name was: gnl|Prokka|DFBKCNKL_42); gnlProkkaDFBKCNKL_44 (original name was: gnl|Prokka|DFBKCNKL_44); gnlProkkaDFBKCNKL_45 (original name was: gnl|Prokka|DFBKCNKL_45); gnlProkkaDFBKCNKL_46 (original name was: gnl|Prokka|DFBKCNKL_46); gnlProkkaDFBKCNKL_48 (original name was: gnl|Prokka|DFBKCNKL_48); gnlProkkaDFBKCNKL_49 (original name was: gnl|Prokka|DFBKCNKL_49); gnlProkkaDFBKCNKL_51 (original name was: gnl|Prokka|DFBKCNKL_51); gnlProkkaDFBKCNKL_52 (original name was: gnl|Prokka|DFBKCNKL_52)

Compact view

gnlProkkaDFBKCNKL_1 - Region 1 - RaS-RiPP

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Location: 82,449 - 103,999 nt. (total: 21,551 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDFBKCNKL_13 - Region 1 - RaS-RiPP

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Location: 103,027 - 126,252 nt. (total: 23,226 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.

gnlProkkaDFBKCNKL_22 - Region 1 - RRE-containing

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Location: 192,843 - 213,976 nt. (total: 21,134 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDFBKCNKL_36 - Region 1 - NRPS-like

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Location: 8,838 - 51,729 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg26_31

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaDFBKCNKL_37 - Region 1 - NRPS-like

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Location: 1 - 7,053 nt. (total: 7,053 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg27_4

Search NORINE for peptide: strict or relaxed

AMP-binding (6..388): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVTSCALIYK
Nearest Stachelhaus code(s):: Ala DVTNFALIYK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaDFBKCNKL_43 - Region 1 - lanthipeptide-class-i

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Location: 1 - 23,752 nt. (total: 23,752 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaDFBKCNKL_53 - Region 1 - RiPP-like

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Location: 4,842 - 19,027 nt. (total: 14,186 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

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resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaDFBKCNKL_54 - Region 1 - RaS-RiPP

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Location: 254,988 - 277,412 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1