GCA_017580955.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJBNBAEPM_44 (original name was: gnl|Prokka|JBNBAEPM_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	cyclic-lactone-autoinducer	294,394	315,099

gnlProkkaJBNBAEPM_48 (original name was: gnl|Prokka|JBNBAEPM_48)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	T3PKS	1	38,504

gnlProkkaJBNBAEPM_50 (original name was: gnl|Prokka|JBNBAEPM_50)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	terpene	33,085	52,671

gnlProkkaJBNBAEPM_60 (original name was: gnl|Prokka|JBNBAEPM_60)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	lanthipeptide-class-iii	21,866	35,615

gnlProkkaJBNBAEPM_81 (original name was: gnl|Prokka|JBNBAEPM_81)

Region	Type	From	To	Most similar known cluster		Similarity
Region 48.1	NRPS	1	8,946

gnlProkkaJBNBAEPM_132 (original name was: gnl|Prokka|JBNBAEPM_132)

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	RiPP-like	1	6,365

Region	Type	From	To	Similarity
Region 11.1	cyclic-lactone-autoinducer	294,394	315,099
Region 15.1	T3PKS	1	38,504
Region 17.1	terpene	33,085	52,671
Region 27.1	lanthipeptide-class-iii	21,866	35,615
Region 48.1	NRPS	1	8,946
Region 99.1	RiPP-like	1	6,365

Compact view

gnlProkkaJBNBAEPM_44 - Region 1 - cyclic-lactone-autoinducer

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Location: 294,394 - 315,099 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJBNBAEPM_48 - Region 1 - T3PKS

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Location: 1 - 38,504 nt. (total: 38,504 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJBNBAEPM_50 - Region 1 - terpene

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Location: 33,085 - 52,671 nt. (total: 19,587 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJBNBAEPM_60 - Region 1 - lanthipeptide-class-iii

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Location: 21,866 - 35,615 nt. (total: 13,750 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iii: (micKC and not PKS_KS)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaJBNBAEPM_81 - Region 1 - NRPS

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Location: 1 - 8,946 nt. (total: 8,946 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 8946:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg48_2

AMP-binding (26..193): X

ctg48_4

Search NORINE for peptide: strict or relaxed

AMP-binding (533..923): Cys

nrpys: Cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Polar, uncharged (aliphatic with -SH) (Cys)
Small clusters prediction:: Polar, uncharged (aliphatic with -SH) (Cys)
Single AA prediction:: Polar, uncharged (aliphatic with -SH) (Cys)

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code(s):: Cys DLFNLSLIWK (76% 8Å match)
Stachelhaus code match:: 100% (strong)

gnlProkkaJBNBAEPM_132 - Region 1 - RiPP-like

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Location: 1 - 6,365 nt. (total: 6,365 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.