GCA_017580975.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaMJJDGNPF_9 (original name was: gnl|Prokka|MJJDGNPF_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	RiPP-like	59,375	67,206

gnlProkkaMJJDGNPF_10 (original name was: gnl|Prokka|MJJDGNPF_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	NRPS	1	43,066	mutanocyclin/leuvalin/tyrvalin	NRP	46%

gnlProkkaMJJDGNPF_12 (original name was: gnl|Prokka|MJJDGNPF_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	395,627	416,508

gnlProkkaMJJDGNPF_45 (original name was: gnl|Prokka|MJJDGNPF_45)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	cyclic-lactone-autoinducer	9,175	29,880

gnlProkkaMJJDGNPF_57 (original name was: gnl|Prokka|MJJDGNPF_57)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	T3PKS	109,357	150,526

Region	Type	From	To	Most similar known cluster	Similarity
Region 8.1	RiPP-like	59,375	67,206
Region 9.1	NRPS	1	43,066	mutanocyclin/leuvalin/tyrvalin	NRP	46%
Region 11.1	terpene	395,627	416,508
Region 41.1	cyclic-lactone-autoinducer	9,175	29,880
Region 44.1	T3PKS	109,357	150,526

No secondary metabolite regions were found in these records:: gnlProkkaMJJDGNPF_1 (original name was: gnl|Prokka|MJJDGNPF_1); gnlProkkaMJJDGNPF_2 (original name was: gnl|Prokka|MJJDGNPF_2); gnlProkkaMJJDGNPF_3 (original name was: gnl|Prokka|MJJDGNPF_3); gnlProkkaMJJDGNPF_5 (original name was: gnl|Prokka|MJJDGNPF_5); gnlProkkaMJJDGNPF_6 (original name was: gnl|Prokka|MJJDGNPF_6); gnlProkkaMJJDGNPF_7 (original name was: gnl|Prokka|MJJDGNPF_7); gnlProkkaMJJDGNPF_8 (original name was: gnl|Prokka|MJJDGNPF_8); gnlProkkaMJJDGNPF_11 (original name was: gnl|Prokka|MJJDGNPF_11); gnlProkkaMJJDGNPF_13 (original name was: gnl|Prokka|MJJDGNPF_13); gnlProkkaMJJDGNPF_14 (original name was: gnl|Prokka|MJJDGNPF_14); gnlProkkaMJJDGNPF_15 (original name was: gnl|Prokka|MJJDGNPF_15); gnlProkkaMJJDGNPF_16 (original name was: gnl|Prokka|MJJDGNPF_16); gnlProkkaMJJDGNPF_17 (original name was: gnl|Prokka|MJJDGNPF_17); gnlProkkaMJJDGNPF_18 (original name was: gnl|Prokka|MJJDGNPF_18); gnlProkkaMJJDGNPF_19 (original name was: gnl|Prokka|MJJDGNPF_19); gnlProkkaMJJDGNPF_20 (original name was: gnl|Prokka|MJJDGNPF_20); gnlProkkaMJJDGNPF_21 (original name was: gnl|Prokka|MJJDGNPF_21); gnlProkkaMJJDGNPF_22 (original name was: gnl|Prokka|MJJDGNPF_22); gnlProkkaMJJDGNPF_23 (original name was: gnl|Prokka|MJJDGNPF_23); gnlProkkaMJJDGNPF_24 (original name was: gnl|Prokka|MJJDGNPF_24); gnlProkkaMJJDGNPF_25 (original name was: gnl|Prokka|MJJDGNPF_25); gnlProkkaMJJDGNPF_26 (original name was: gnl|Prokka|MJJDGNPF_26); gnlProkkaMJJDGNPF_27 (original name was: gnl|Prokka|MJJDGNPF_27); gnlProkkaMJJDGNPF_28 (original name was: gnl|Prokka|MJJDGNPF_28); gnlProkkaMJJDGNPF_29 (original name was: gnl|Prokka|MJJDGNPF_29); gnlProkkaMJJDGNPF_30 (original name was: gnl|Prokka|MJJDGNPF_30); gnlProkkaMJJDGNPF_31 (original name was: gnl|Prokka|MJJDGNPF_31); gnlProkkaMJJDGNPF_32 (original name was: gnl|Prokka|MJJDGNPF_32); gnlProkkaMJJDGNPF_33 (original name was: gnl|Prokka|MJJDGNPF_33); gnlProkkaMJJDGNPF_34 (original name was: gnl|Prokka|MJJDGNPF_34); gnlProkkaMJJDGNPF_35 (original name was: gnl|Prokka|MJJDGNPF_35); gnlProkkaMJJDGNPF_36 (original name was: gnl|Prokka|MJJDGNPF_36); gnlProkkaMJJDGNPF_37 (original name was: gnl|Prokka|MJJDGNPF_37); gnlProkkaMJJDGNPF_38 (original name was: gnl|Prokka|MJJDGNPF_38); gnlProkkaMJJDGNPF_39 (original name was: gnl|Prokka|MJJDGNPF_39); gnlProkkaMJJDGNPF_40 (original name was: gnl|Prokka|MJJDGNPF_40); gnlProkkaMJJDGNPF_41 (original name was: gnl|Prokka|MJJDGNPF_41); gnlProkkaMJJDGNPF_53 (original name was: gnl|Prokka|MJJDGNPF_53); gnlProkkaMJJDGNPF_56 (original name was: gnl|Prokka|MJJDGNPF_56); gnlProkkaMJJDGNPF_58 (original name was: gnl|Prokka|MJJDGNPF_58); gnlProkkaMJJDGNPF_59 (original name was: gnl|Prokka|MJJDGNPF_59)

Compact view

gnlProkkaMJJDGNPF_9 - Region 1 - RiPP-like

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Location: 59,375 - 67,206 nt. (total: 7,832 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaMJJDGNPF_10 - Region 1 - NRPS

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Location: 1 - 43,066 nt. (total: 43,066 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 43066:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg9_20

Search NORINE for peptide: strict or relaxed

AMP-binding (447..839): Thr

nrpys: Thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: thr (Thr)
Single AA prediction:: thr (Thr)

Stachelhaus prediction details:

Stachelhaus sequence:: DYFTLGLVVK
Nearest Stachelhaus code(s):: Leu DYFTFGLIIK (68% 8Å match); OMe-Trp DAFTLGCVFK (56% 8Å match)
Stachelhaus code match:: 70% (weak)

gnlProkkaMJJDGNPF_12 - Region 1 - terpene

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Location: 395,627 - 416,508 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaMJJDGNPF_45 - Region 1 - cyclic-lactone-autoinducer

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Location: 9,175 - 29,880 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaMJJDGNPF_57 - Region 1 - T3PKS

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Location: 109,357 - 150,526 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.