GCA_017963535.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPCILNOCN_2 (original name was: gnl|Prokka|PCILNOCN_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	terpene	26,088	46,969

gnlProkkaPCILNOCN_4 (original name was: gnl|Prokka|PCILNOCN_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	97,280	109,430

gnlProkkaPCILNOCN_45 (original name was: gnl|Prokka|PCILNOCN_45)

Region	Type	From	To	Most similar known cluster		Similarity
Region 45.1	cyclic-lactone-autoinducer	110,503	131,208

Region	Type	From	To	Similarity
Region 2.1	terpene	26,088	46,969
Region 4.1	RiPP-like	97,280	109,430
Region 45.1	cyclic-lactone-autoinducer	110,503	131,208

No secondary metabolite regions were found in these records:: gnlProkkaPCILNOCN_1 (original name was: gnl|Prokka|PCILNOCN_1); gnlProkkaPCILNOCN_3 (original name was: gnl|Prokka|PCILNOCN_3); gnlProkkaPCILNOCN_5 (original name was: gnl|Prokka|PCILNOCN_5); gnlProkkaPCILNOCN_6 (original name was: gnl|Prokka|PCILNOCN_6); gnlProkkaPCILNOCN_7 (original name was: gnl|Prokka|PCILNOCN_7); gnlProkkaPCILNOCN_8 (original name was: gnl|Prokka|PCILNOCN_8); gnlProkkaPCILNOCN_9 (original name was: gnl|Prokka|PCILNOCN_9); gnlProkkaPCILNOCN_10 (original name was: gnl|Prokka|PCILNOCN_10); gnlProkkaPCILNOCN_11 (original name was: gnl|Prokka|PCILNOCN_11); gnlProkkaPCILNOCN_12 (original name was: gnl|Prokka|PCILNOCN_12); gnlProkkaPCILNOCN_13 (original name was: gnl|Prokka|PCILNOCN_13); gnlProkkaPCILNOCN_14 (original name was: gnl|Prokka|PCILNOCN_14); gnlProkkaPCILNOCN_15 (original name was: gnl|Prokka|PCILNOCN_15); gnlProkkaPCILNOCN_16 (original name was: gnl|Prokka|PCILNOCN_16); gnlProkkaPCILNOCN_17 (original name was: gnl|Prokka|PCILNOCN_17); gnlProkkaPCILNOCN_18 (original name was: gnl|Prokka|PCILNOCN_18); gnlProkkaPCILNOCN_19 (original name was: gnl|Prokka|PCILNOCN_19); gnlProkkaPCILNOCN_20 (original name was: gnl|Prokka|PCILNOCN_20); gnlProkkaPCILNOCN_21 (original name was: gnl|Prokka|PCILNOCN_21); gnlProkkaPCILNOCN_22 (original name was: gnl|Prokka|PCILNOCN_22); gnlProkkaPCILNOCN_23 (original name was: gnl|Prokka|PCILNOCN_23); gnlProkkaPCILNOCN_24 (original name was: gnl|Prokka|PCILNOCN_24); gnlProkkaPCILNOCN_25 (original name was: gnl|Prokka|PCILNOCN_25); gnlProkkaPCILNOCN_26 (original name was: gnl|Prokka|PCILNOCN_26); gnlProkkaPCILNOCN_27 (original name was: gnl|Prokka|PCILNOCN_27); gnlProkkaPCILNOCN_28 (original name was: gnl|Prokka|PCILNOCN_28); gnlProkkaPCILNOCN_29 (original name was: gnl|Prokka|PCILNOCN_29); gnlProkkaPCILNOCN_30 (original name was: gnl|Prokka|PCILNOCN_30); gnlProkkaPCILNOCN_31 (original name was: gnl|Prokka|PCILNOCN_31); gnlProkkaPCILNOCN_32 (original name was: gnl|Prokka|PCILNOCN_32); gnlProkkaPCILNOCN_33 (original name was: gnl|Prokka|PCILNOCN_33); gnlProkkaPCILNOCN_34 (original name was: gnl|Prokka|PCILNOCN_34); gnlProkkaPCILNOCN_35 (original name was: gnl|Prokka|PCILNOCN_35); gnlProkkaPCILNOCN_36 (original name was: gnl|Prokka|PCILNOCN_36); gnlProkkaPCILNOCN_37 (original name was: gnl|Prokka|PCILNOCN_37); gnlProkkaPCILNOCN_38 (original name was: gnl|Prokka|PCILNOCN_38); gnlProkkaPCILNOCN_39 (original name was: gnl|Prokka|PCILNOCN_39); gnlProkkaPCILNOCN_40 (original name was: gnl|Prokka|PCILNOCN_40); gnlProkkaPCILNOCN_41 (original name was: gnl|Prokka|PCILNOCN_41); gnlProkkaPCILNOCN_42 (original name was: gnl|Prokka|PCILNOCN_42); gnlProkkaPCILNOCN_43 (original name was: gnl|Prokka|PCILNOCN_43); gnlProkkaPCILNOCN_44 (original name was: gnl|Prokka|PCILNOCN_44); gnlProkkaPCILNOCN_46 (original name was: gnl|Prokka|PCILNOCN_46); gnlProkkaPCILNOCN_47 (original name was: gnl|Prokka|PCILNOCN_47); gnlProkkaPCILNOCN_48 (original name was: gnl|Prokka|PCILNOCN_48); gnlProkkaPCILNOCN_49 (original name was: gnl|Prokka|PCILNOCN_49); gnlProkkaPCILNOCN_50 (original name was: gnl|Prokka|PCILNOCN_50); gnlProkkaPCILNOCN_56 (original name was: gnl|Prokka|PCILNOCN_56); gnlProkkaPCILNOCN_67 (original name was: gnl|Prokka|PCILNOCN_67); gnlProkkaPCILNOCN_78 (original name was: gnl|Prokka|PCILNOCN_78); gnlProkkaPCILNOCN_89 (original name was: gnl|Prokka|PCILNOCN_89)

Compact view

gnlProkkaPCILNOCN_2 - Region 1 - terpene

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Location: 26,088 - 46,969 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPCILNOCN_4 - Region 1 - RiPP-like

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Location: 97,280 - 109,430 nt. (total: 12,151 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPCILNOCN_45 - Region 1 - cyclic-lactone-autoinducer

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Location: 110,503 - 131,208 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.