GCA_018257075.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGMNLNDML_2 (original name was: gnl|Prokka|GMNLNDML_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	T3PKS	1	26,849

gnlProkkaGMNLNDML_22 (original name was: gnl|Prokka|GMNLNDML_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	cyclic-lactone-autoinducer	212,924	233,629

gnlProkkaGMNLNDML_33 (original name was: gnl|Prokka|GMNLNDML_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	terpene	371,990	392,871

gnlProkkaGMNLNDML_39 (original name was: gnl|Prokka|GMNLNDML_39)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	RiPP-like	277,617	289,767

Region	Type	From	To	Similarity
Region 2.1	T3PKS	1	26,849
Region 22.1	cyclic-lactone-autoinducer	212,924	233,629
Region 31.1	terpene	371,990	392,871
Region 32.1	RiPP-like	277,617	289,767

No secondary metabolite regions were found in these records:: gnlProkkaGMNLNDML_1 (original name was: gnl|Prokka|GMNLNDML_1); gnlProkkaGMNLNDML_3 (original name was: gnl|Prokka|GMNLNDML_3); gnlProkkaGMNLNDML_4 (original name was: gnl|Prokka|GMNLNDML_4); gnlProkkaGMNLNDML_5 (original name was: gnl|Prokka|GMNLNDML_5); gnlProkkaGMNLNDML_6 (original name was: gnl|Prokka|GMNLNDML_6); gnlProkkaGMNLNDML_7 (original name was: gnl|Prokka|GMNLNDML_7); gnlProkkaGMNLNDML_8 (original name was: gnl|Prokka|GMNLNDML_8); gnlProkkaGMNLNDML_9 (original name was: gnl|Prokka|GMNLNDML_9); gnlProkkaGMNLNDML_10 (original name was: gnl|Prokka|GMNLNDML_10); gnlProkkaGMNLNDML_11 (original name was: gnl|Prokka|GMNLNDML_11); gnlProkkaGMNLNDML_12 (original name was: gnl|Prokka|GMNLNDML_12); gnlProkkaGMNLNDML_13 (original name was: gnl|Prokka|GMNLNDML_13); gnlProkkaGMNLNDML_14 (original name was: gnl|Prokka|GMNLNDML_14); gnlProkkaGMNLNDML_15 (original name was: gnl|Prokka|GMNLNDML_15); gnlProkkaGMNLNDML_16 (original name was: gnl|Prokka|GMNLNDML_16); gnlProkkaGMNLNDML_17 (original name was: gnl|Prokka|GMNLNDML_17); gnlProkkaGMNLNDML_18 (original name was: gnl|Prokka|GMNLNDML_18); gnlProkkaGMNLNDML_19 (original name was: gnl|Prokka|GMNLNDML_19); gnlProkkaGMNLNDML_20 (original name was: gnl|Prokka|GMNLNDML_20); gnlProkkaGMNLNDML_21 (original name was: gnl|Prokka|GMNLNDML_21); gnlProkkaGMNLNDML_23 (original name was: gnl|Prokka|GMNLNDML_23); gnlProkkaGMNLNDML_24 (original name was: gnl|Prokka|GMNLNDML_24); gnlProkkaGMNLNDML_25 (original name was: gnl|Prokka|GMNLNDML_25); gnlProkkaGMNLNDML_26 (original name was: gnl|Prokka|GMNLNDML_26); gnlProkkaGMNLNDML_27 (original name was: gnl|Prokka|GMNLNDML_27); gnlProkkaGMNLNDML_28 (original name was: gnl|Prokka|GMNLNDML_28); gnlProkkaGMNLNDML_29 (original name was: gnl|Prokka|GMNLNDML_29); gnlProkkaGMNLNDML_30 (original name was: gnl|Prokka|GMNLNDML_30); gnlProkkaGMNLNDML_40 (original name was: gnl|Prokka|GMNLNDML_40); gnlProkkaGMNLNDML_41 (original name was: gnl|Prokka|GMNLNDML_41); gnlProkkaGMNLNDML_42 (original name was: gnl|Prokka|GMNLNDML_42); gnlProkkaGMNLNDML_43 (original name was: gnl|Prokka|GMNLNDML_43); gnlProkkaGMNLNDML_44 (original name was: gnl|Prokka|GMNLNDML_44)

Compact view

gnlProkkaGMNLNDML_2 - Region 1 - T3PKS

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Location: 1 - 26,849 nt. (total: 26,849 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGMNLNDML_22 - Region 1 - cyclic-lactone-autoinducer

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Location: 212,924 - 233,629 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGMNLNDML_33 - Region 1 - terpene

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Location: 371,990 - 392,871 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGMNLNDML_39 - Region 1 - RiPP-like

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Location: 277,617 - 289,767 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.