GCA_018375315.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Rnf_complex	E-MGC	381,572	406,806	Rnf complex C. sporogenes	RNF	83%

c00009_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	NADH_dehydrogenase_I	E-MGC	20,376	50,454	NADH dehydrogenase I Bacteroides sp.	NADHD	71%

c00010_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	PFOR_II_pathway	SCFA	6,349	29,906	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00015_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	porA	SCFA	307,825	330,668	porA C. sporogenes	POR	80%
Region 15.2	succinate2propionate	SCFA	411,634	436,342	Succinate to propionate B. theta	PRO	75%

c00027_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Fumarate2succinate	SCFA	79,365	102,835	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00028_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Pyruvate2acetate-formate,GR_fatty_acids	Putative	75,618	101,996	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00031_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_31)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	TPP_AA_metabolism	Putative	188,682	214,763

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_2); c00003_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_3); c00004_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_4); c00005_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_5); c00006_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_6); c00007_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_7); c00008_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_8); c00011_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_11); c00012_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_12); c00013_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_13); c00014_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_14); c00016_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_16); c00017_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_17); c00018_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_18); c00019_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_19); c00020_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_20); c00021_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_21); c00022_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_22); c00023_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_23); c00024_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_24); c00025_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_25); c00026_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_26); c00029_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_29); c00030_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_30); c00032_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_32); c00033_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_33); c00034_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_34); c00035_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_35); c00036_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_36); c00037_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_37); c00038_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_38); c00039_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_39); c00040_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_40); c00041_gnlPro.. (original name was: gnl|Prokka|GGJDNLKC_41)

Compact view

c00001_gnlPro.. - Region 1 - Rnf_complex

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Location: 381,572 - 406,806 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00009_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 20,376 - 50,454 nt. (total: 30,079 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00010_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 6,349 - 29,906 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00015_gnlPro.. - Region 1 - porA

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Location: 307,825 - 330,668 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00015_gnlPro.. - Region 2 - succinate2propionate

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Location: 411,634 - 436,342 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00027_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 79,365 - 102,835 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00028_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 75,618 - 101,996 nt. (total: 26,379 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))

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c00031_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 188,682 - 214,763 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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