GCA_018783545.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEMDINGLP_15 (original name was: gnl|Prokka|EMDINGLP_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RiPP-like	73,737	85,833	quinolidomicin A	Polyketide	3%

gnlProkkaEMDINGLP_38 (original name was: gnl|Prokka|EMDINGLP_38)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	T3PKS	29,493	70,659

gnlProkkaEMDINGLP_61 (original name was: gnl|Prokka|EMDINGLP_61)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	55,947	74,752

No secondary metabolite regions were found in these records:: gnlProkkaEMDINGLP_2 (original name was: gnl|Prokka|EMDINGLP_2); gnlProkkaEMDINGLP_5 (original name was: gnl|Prokka|EMDINGLP_5); gnlProkkaEMDINGLP_8 (original name was: gnl|Prokka|EMDINGLP_8); gnlProkkaEMDINGLP_9 (original name was: gnl|Prokka|EMDINGLP_9); gnlProkkaEMDINGLP_11 (original name was: gnl|Prokka|EMDINGLP_11); gnlProkkaEMDINGLP_14 (original name was: gnl|Prokka|EMDINGLP_14); gnlProkkaEMDINGLP_16 (original name was: gnl|Prokka|EMDINGLP_16); gnlProkkaEMDINGLP_19 (original name was: gnl|Prokka|EMDINGLP_19); gnlProkkaEMDINGLP_20 (original name was: gnl|Prokka|EMDINGLP_20); gnlProkkaEMDINGLP_21 (original name was: gnl|Prokka|EMDINGLP_21); gnlProkkaEMDINGLP_22 (original name was: gnl|Prokka|EMDINGLP_22); gnlProkkaEMDINGLP_23 (original name was: gnl|Prokka|EMDINGLP_23); gnlProkkaEMDINGLP_24 (original name was: gnl|Prokka|EMDINGLP_24); gnlProkkaEMDINGLP_25 (original name was: gnl|Prokka|EMDINGLP_25); gnlProkkaEMDINGLP_26 (original name was: gnl|Prokka|EMDINGLP_26); gnlProkkaEMDINGLP_28 (original name was: gnl|Prokka|EMDINGLP_28); gnlProkkaEMDINGLP_29 (original name was: gnl|Prokka|EMDINGLP_29); gnlProkkaEMDINGLP_35 (original name was: gnl|Prokka|EMDINGLP_35); gnlProkkaEMDINGLP_36 (original name was: gnl|Prokka|EMDINGLP_36); gnlProkkaEMDINGLP_37 (original name was: gnl|Prokka|EMDINGLP_37); gnlProkkaEMDINGLP_44 (original name was: gnl|Prokka|EMDINGLP_44); gnlProkkaEMDINGLP_45 (original name was: gnl|Prokka|EMDINGLP_45); gnlProkkaEMDINGLP_46 (original name was: gnl|Prokka|EMDINGLP_46); gnlProkkaEMDINGLP_47 (original name was: gnl|Prokka|EMDINGLP_47); gnlProkkaEMDINGLP_48 (original name was: gnl|Prokka|EMDINGLP_48); gnlProkkaEMDINGLP_49 (original name was: gnl|Prokka|EMDINGLP_49); gnlProkkaEMDINGLP_50 (original name was: gnl|Prokka|EMDINGLP_50); gnlProkkaEMDINGLP_54 (original name was: gnl|Prokka|EMDINGLP_54); gnlProkkaEMDINGLP_56 (original name was: gnl|Prokka|EMDINGLP_56); gnlProkkaEMDINGLP_60 (original name was: gnl|Prokka|EMDINGLP_60); gnlProkkaEMDINGLP_67 (original name was: gnl|Prokka|EMDINGLP_67)

Compact view

gnlProkkaEMDINGLP_15 - Region 1 - RiPP-like

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Location: 73,737 - 85,833 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaEMDINGLP_38 - Region 1 - T3PKS

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Location: 29,493 - 70,659 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaEMDINGLP_61 - Region 1 - RiPP-like

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Location: 55,947 - 74,752 nt. (total: 18,806 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.