GCA_018784025.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJDKCBIBB_26 (original name was: gnl|Prokka|JDKCBIBB_26)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	cyclic-lactone-autoinducer	39,946	60,512

gnlProkkaJDKCBIBB_31 (original name was: gnl|Prokka|JDKCBIBB_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	ranthipeptide	5,578	31,212

gnlProkkaJDKCBIBB_66 (original name was: gnl|Prokka|JDKCBIBB_66)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	RRE-containing	111,219	132,361
Region 31.2	RRE-containing	135,001	155,258

gnlProkkaJDKCBIBB_86 (original name was: gnl|Prokka|JDKCBIBB_86)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	ranthipeptide	73,503	95,122

Region	Type	From	To	Similarity
Region 8.1	cyclic-lactone-autoinducer	39,946	60,512
Region 10.1	ranthipeptide	5,578	31,212
Region 31.1	RRE-containing	111,219	132,361
Region 31.2	RRE-containing	135,001	155,258
Region 44.1	ranthipeptide	73,503	95,122

No secondary metabolite regions were found in these records:: gnlProkkaJDKCBIBB_7 (original name was: gnl|Prokka|JDKCBIBB_7); gnlProkkaJDKCBIBB_8 (original name was: gnl|Prokka|JDKCBIBB_8); gnlProkkaJDKCBIBB_9 (original name was: gnl|Prokka|JDKCBIBB_9); gnlProkkaJDKCBIBB_12 (original name was: gnl|Prokka|JDKCBIBB_12); gnlProkkaJDKCBIBB_16 (original name was: gnl|Prokka|JDKCBIBB_16); gnlProkkaJDKCBIBB_21 (original name was: gnl|Prokka|JDKCBIBB_21); gnlProkkaJDKCBIBB_24 (original name was: gnl|Prokka|JDKCBIBB_24); gnlProkkaJDKCBIBB_28 (original name was: gnl|Prokka|JDKCBIBB_28); gnlProkkaJDKCBIBB_33 (original name was: gnl|Prokka|JDKCBIBB_33); gnlProkkaJDKCBIBB_34 (original name was: gnl|Prokka|JDKCBIBB_34); gnlProkkaJDKCBIBB_35 (original name was: gnl|Prokka|JDKCBIBB_35); gnlProkkaJDKCBIBB_40 (original name was: gnl|Prokka|JDKCBIBB_40); gnlProkkaJDKCBIBB_42 (original name was: gnl|Prokka|JDKCBIBB_42); gnlProkkaJDKCBIBB_44 (original name was: gnl|Prokka|JDKCBIBB_44); gnlProkkaJDKCBIBB_45 (original name was: gnl|Prokka|JDKCBIBB_45); gnlProkkaJDKCBIBB_46 (original name was: gnl|Prokka|JDKCBIBB_46); gnlProkkaJDKCBIBB_48 (original name was: gnl|Prokka|JDKCBIBB_48); gnlProkkaJDKCBIBB_49 (original name was: gnl|Prokka|JDKCBIBB_49); gnlProkkaJDKCBIBB_51 (original name was: gnl|Prokka|JDKCBIBB_51); gnlProkkaJDKCBIBB_52 (original name was: gnl|Prokka|JDKCBIBB_52); gnlProkkaJDKCBIBB_54 (original name was: gnl|Prokka|JDKCBIBB_54); gnlProkkaJDKCBIBB_55 (original name was: gnl|Prokka|JDKCBIBB_55); gnlProkkaJDKCBIBB_58 (original name was: gnl|Prokka|JDKCBIBB_58); gnlProkkaJDKCBIBB_60 (original name was: gnl|Prokka|JDKCBIBB_60); gnlProkkaJDKCBIBB_61 (original name was: gnl|Prokka|JDKCBIBB_61); gnlProkkaJDKCBIBB_63 (original name was: gnl|Prokka|JDKCBIBB_63); gnlProkkaJDKCBIBB_64 (original name was: gnl|Prokka|JDKCBIBB_64); gnlProkkaJDKCBIBB_65 (original name was: gnl|Prokka|JDKCBIBB_65); gnlProkkaJDKCBIBB_68 (original name was: gnl|Prokka|JDKCBIBB_68); gnlProkkaJDKCBIBB_69 (original name was: gnl|Prokka|JDKCBIBB_69); gnlProkkaJDKCBIBB_70 (original name was: gnl|Prokka|JDKCBIBB_70); gnlProkkaJDKCBIBB_71 (original name was: gnl|Prokka|JDKCBIBB_71); gnlProkkaJDKCBIBB_72 (original name was: gnl|Prokka|JDKCBIBB_72); gnlProkkaJDKCBIBB_73 (original name was: gnl|Prokka|JDKCBIBB_73); gnlProkkaJDKCBIBB_74 (original name was: gnl|Prokka|JDKCBIBB_74); gnlProkkaJDKCBIBB_78 (original name was: gnl|Prokka|JDKCBIBB_78); gnlProkkaJDKCBIBB_79 (original name was: gnl|Prokka|JDKCBIBB_79); gnlProkkaJDKCBIBB_80 (original name was: gnl|Prokka|JDKCBIBB_80); gnlProkkaJDKCBIBB_82 (original name was: gnl|Prokka|JDKCBIBB_82); gnlProkkaJDKCBIBB_85 (original name was: gnl|Prokka|JDKCBIBB_85); gnlProkkaJDKCBIBB_88 (original name was: gnl|Prokka|JDKCBIBB_88); gnlProkkaJDKCBIBB_89 (original name was: gnl|Prokka|JDKCBIBB_89); gnlProkkaJDKCBIBB_90 (original name was: gnl|Prokka|JDKCBIBB_90); gnlProkkaJDKCBIBB_92 (original name was: gnl|Prokka|JDKCBIBB_92); gnlProkkaJDKCBIBB_94 (original name was: gnl|Prokka|JDKCBIBB_94); gnlProkkaJDKCBIBB_95 (original name was: gnl|Prokka|JDKCBIBB_95); gnlProkkaJDKCBIBB_97 (original name was: gnl|Prokka|JDKCBIBB_97); gnlProkkaJDKCBIBB_98 (original name was: gnl|Prokka|JDKCBIBB_98); gnlProkkaJDKCBIBB_99 (original name was: gnl|Prokka|JDKCBIBB_99); gnlProkkaJDKCBIBB_100 (original name was: gnl|Prokka|JDKCBIBB_100); gnlProkkaJDKCBIBB_102 (original name was: gnl|Prokka|JDKCBIBB_102); gnlProkkaJDKCBIBB_104 (original name was: gnl|Prokka|JDKCBIBB_104); gnlProkkaJDKCBIBB_110 (original name was: gnl|Prokka|JDKCBIBB_110); gnlProkkaJDKCBIBB_114 (original name was: gnl|Prokka|JDKCBIBB_114); gnlProkkaJDKCBIBB_118 (original name was: gnl|Prokka|JDKCBIBB_118); gnlProkkaJDKCBIBB_119 (original name was: gnl|Prokka|JDKCBIBB_119); gnlProkkaJDKCBIBB_120 (original name was: gnl|Prokka|JDKCBIBB_120); gnlProkkaJDKCBIBB_122 (original name was: gnl|Prokka|JDKCBIBB_122); gnlProkkaJDKCBIBB_124 (original name was: gnl|Prokka|JDKCBIBB_124)

Compact view

gnlProkkaJDKCBIBB_26 - Region 1 - cyclic-lactone-autoinducer

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Location: 39,946 - 60,512 nt. (total: 20,567 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJDKCBIBB_31 - Region 1 - ranthipeptide

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Location: 5,578 - 31,212 nt. (total: 25,635 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJDKCBIBB_66 - Region 1 - RRE-containing

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Location: 111,219 - 132,361 nt. (total: 21,143 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJDKCBIBB_66 - Region 2 - RRE-containing

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Location: 135,001 - 155,258 nt. (total: 20,258 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJDKCBIBB_86 - Region 1 - ranthipeptide

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Location: 73,503 - 95,122 nt. (total: 21,620 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.