GCA_018784025.1 - 6 region(s)

Identified primary metabolite regions

c00020_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_49)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Others_HGD_unassigned	Putative	377,095	401,378

c00031_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Rnf_complex,succinate2propionate	SCFA	32,263	70,598	Rnf complex C. sporogenes	RNF	100%

c00040_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_79)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	85,417	116,447	Putrescine2spermidine E. rectale	SPRM	100%

c00041_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_80)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	porA	SCFA	23,736	47,363	Ethanolamine degradation S. typhimurium	EUT	15%

c00052_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_98)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	Pyruvate2acetate-formate	SCFA	42,701	65,835	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%
Region 52.2	acetate2butyrate	SCFA	164,840	190,130	Acetate to butyrate C. sporogenes	BUT	83%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 20.1	Others_HGD_unassigned	Putative	377,095	401,378
Region 31.1	Rnf_complex,succinate2propionate	SCFA	32,263	70,598	Rnf complex C. sporogenes	RNF	100%
Region 40.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	85,417	116,447	Putrescine2spermidine E. rectale	SPRM	100%
Region 41.1	porA	SCFA	23,736	47,363	Ethanolamine degradation S. typhimurium	EUT	15%
Region 52.1	Pyruvate2acetate-formate	SCFA	42,701	65,835	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%
Region 52.2	acetate2butyrate	SCFA	164,840	190,130	Acetate to butyrate C. sporogenes	BUT	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_7); c00002_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_8); c00003_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_9); c00004_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_12); c00005_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_16); c00006_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_21); c00007_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_24); c00008_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_26); c00009_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_28); c00010_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_31); c00011_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_33); c00012_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_34); c00013_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_35); c00014_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_40); c00015_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_42); c00016_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_44); c00017_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_45); c00018_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_46); c00019_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_48); c00021_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_51); c00022_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_52); c00023_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_54); c00024_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_55); c00025_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_58); c00026_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_60); c00027_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_61); c00028_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_63); c00029_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_64); c00030_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_65); c00032_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_68); c00033_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_69); c00034_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_70); c00035_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_71); c00036_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_72); c00037_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_73); c00038_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_74); c00039_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_78); c00042_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_82); c00043_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_85); c00044_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_86); c00045_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_88); c00046_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_89); c00047_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_90); c00048_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_92); c00049_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_94); c00050_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_95); c00051_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_97); c00053_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_99); c00054_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_100); c00055_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_102); c00056_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_104); c00057_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_110); c00058_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_114); c00059_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_118); c00060_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_119); c00061_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_120); c00062_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_122); c00063_gnlPro.. (original name was: gnl|Prokka|JDKCBIBB_124)

Compact view

c00020_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 377,095 - 401,378 nt. (total: 24,284 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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No matches found.

c00031_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 32,263 - 70,598 nt. (total: 38,336 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00040_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine

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Location: 85,417 - 116,447 nt. (total: 31,031 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00041_gnlPro.. - Region 1 - porA

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Location: 23,736 - 47,363 nt. (total: 23,628 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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transport-related genes

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resistance genes

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c00052_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 42,701 - 65,835 nt. (total: 23,135 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00052_gnlPro.. - Region 2 - acetate2butyrate

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Location: 164,840 - 190,130 nt. (total: 25,291 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters