GCA_019052515.1 - 6 region(s)

Identified primary metabolite regions

c00010_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Fumarate2succinate	SCFA	72,212	95,682	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00011_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	succinate2propionate	SCFA	25,229	49,841	Succinate to propionate B. theta	PRO	75%

c00013_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	PFOR_II_pathway	SCFA	22,277	45,834	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00020_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	porA	SCFA	19,547	42,390	porA C. sporogenes	POR	80%

c00033_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_40)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Rnf_complex	E-MGC	1	17,025	Rnf complex C. sporogenes	RNF	83%

c00054_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_61)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	NADH_dehydrogenase_I	E-MGC	45,422	75,653	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_1); c00002_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_2); c00003_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_3); c00004_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_4); c00005_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_9); c00006_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_13); c00007_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_14); c00008_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_15); c00009_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_16); c00012_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_19); c00014_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_21); c00015_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_22); c00016_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_23); c00017_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_24); c00018_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_25); c00019_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_26); c00021_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_28); c00022_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_29); c00023_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_30); c00024_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_31); c00025_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_32); c00026_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_33); c00027_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_34); c00028_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_35); c00029_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_36); c00030_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_37); c00031_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_38); c00032_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_39); c00034_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_41); c00035_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_42); c00036_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_43); c00037_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_44); c00038_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_45); c00039_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_46); c00040_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_47); c00041_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_48); c00042_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_49); c00043_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_50); c00044_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_51); c00045_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_52); c00046_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_53); c00047_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_54); c00048_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_55); c00049_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_56); c00050_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_57); c00051_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_58); c00052_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_59); c00053_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_60); c00055_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_62); c00056_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_63); c00057_gnlPro.. (original name was: gnl|Prokka|MBGNAAGN_64)

Compact view

c00010_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 72,212 - 95,682 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

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c00011_gnlPro.. - Region 1 - succinate2propionate

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Location: 25,229 - 49,841 nt. (total: 24,613 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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c00013_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 22,277 - 45,834 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00020_gnlPro.. - Region 1 - porA

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Location: 19,547 - 42,390 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00033_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,025 nt. (total: 17,025 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00054_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 45,422 - 75,653 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters