GCA_019061285.1 - 6 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	acetate2butyrate	SCFA	257,643	283,876	Acetate to butyrate C. sporogenes	BUT	100%

c00007_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	TPP_AA_metabolism	Putative	35,244	56,012	Threonine to propionate E. coli	PROP	20%

c00014_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_48)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Pyruvate2acetate-formate	SCFA	120,229	143,220	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%
Region 14.2	Rnf_complex	E-MGC	161,414	186,472	Rnf complex C. sporogenes	RNF	83%

c00025_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_77)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Others_HGD_unassigned	Putative	11,339	42,326

c00055_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_116)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Putrescine2spermidine	Aliphatic_amine	126,105	150,347	Arginine2putrescine R. gnavus	PUTR	100%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_2); c00003_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_4); c00004_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_7); c00005_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_12); c00006_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_16); c00008_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_25); c00009_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_31); c00010_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_35); c00011_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_39); c00012_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_41); c00013_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_45); c00015_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_49); c00016_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_51); c00017_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_54); c00018_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_56); c00019_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_58); c00020_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_60); c00021_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_64); c00022_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_68); c00023_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_74); c00024_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_76); c00026_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_78); c00027_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_79); c00028_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_80); c00029_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_82); c00030_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_84); c00031_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_85); c00032_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_86); c00033_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_87); c00034_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_89); c00035_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_91); c00036_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_92); c00037_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_94); c00038_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_95); c00039_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_96); c00040_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_98); c00041_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_100); c00042_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_101); c00043_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_103); c00044_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_104); c00045_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_105); c00046_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_106); c00047_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_107); c00048_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_108); c00049_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_109); c00050_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_110); c00051_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_111); c00052_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_112); c00053_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_113); c00054_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_114); c00056_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_117); c00057_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_118); c00058_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_119); c00059_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_120); c00060_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_122); c00061_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_123); c00062_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_124); c00063_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_125); c00064_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_126); c00065_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_127); c00066_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_128); c00067_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_129); c00068_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_130); c00069_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_134); c00070_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_135); c00071_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_136); c00072_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_137); c00073_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_140); c00074_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_142); c00075_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_143); c00076_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_144); c00077_gnlPro.. (original name was: gnl|Prokka|BCAPEMIB_145)

Compact view

c00001_gnlPro.. - Region 1 - acetate2butyrate

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Location: 257,643 - 283,876 nt. (total: 26,234 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00007_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 35,244 - 56,012 nt. (total: 20,769 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00014_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 120,229 - 143,220 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00014_gnlPro.. - Region 2 - Rnf_complex

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Location: 161,414 - 186,472 nt. (total: 25,059 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00025_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 11,339 - 42,326 nt. (total: 30,988 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00055_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 126,105 - 150,347 nt. (total: 24,243 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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Gene details

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