GCA_019126495.1 - 8 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	159,235	182,210	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00009_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	TPP_AA_metabolism	Putative	79,313	104,587

c00014_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	9,838	33,308	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00016_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	succinate2propionate	SCFA	13,942	38,470	Succinate to propionate B. theta	PRO	50%

c00017_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	porA	SCFA	21,846	44,681	porA C. sporogenes	POR	60%

c00022_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_fatty_acids	Putative	86,591	111,448

c00024_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Rnf_complex	E-MGC	27,739	52,799	Rnf complex C. sporogenes	RNF	83%

c00030_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_30)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	OD_unknown	Putative	1	22,482

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_1); c00003_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_3); c00004_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_4); c00005_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_5); c00006_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_6); c00007_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_7); c00008_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_8); c00010_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_10); c00011_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_11); c00012_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_12); c00013_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_13); c00015_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_15); c00018_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_18); c00019_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_19); c00020_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_20); c00021_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_21); c00023_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_23); c00025_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_25); c00026_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_26); c00027_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_27); c00028_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_28); c00029_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_29); c00031_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_31); c00032_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_32); c00033_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_33); c00034_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_34); c00035_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_35); c00036_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_36); c00037_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_37); c00038_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_38); c00039_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_39); c00040_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_40); c00041_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_41); c00042_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_42); c00043_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_43); c00044_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_44); c00045_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_45); c00046_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_46); c00047_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_47); c00048_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_48); c00049_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_49); c00050_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_50); c00051_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_51); c00052_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_52); c00053_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_53); c00054_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_54); c00055_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_55); c00056_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_56); c00057_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_65); c00058_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_73); c00059_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_81); c00060_gnlPro.. (original name was: gnl|Prokka|OMKHEANK_83)

Compact view

c00002_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 159,235 - 182,210 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00009_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 79,313 - 104,587 nt. (total: 25,275 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00014_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 9,838 - 33,308 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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KnownClusterBlast

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c00016_gnlPro.. - Region 1 - succinate2propionate

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Location: 13,942 - 38,470 nt. (total: 24,529 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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core biosynthetic genes

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regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

c00017_gnlPro.. - Region 1 - porA

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Location: 21,846 - 44,681 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00022_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 86,591 - 111,448 nt. (total: 24,858 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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No matches found.

c00024_gnlPro.. - Region 1 - Rnf_complex

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Location: 27,739 - 52,799 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00030_gnlPro.. - Region 1 - OD_unknown

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Location: 1 - 22,482 nt. (total: 22,482 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.