GCA_019128995.1 - 8 region(s)

Identified primary metabolite regions

c00008_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	65,741	89,211	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00011_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	NADH_dehydrogenase_I	E-MGC	247,367	277,598	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00017_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Rnf_complex	E-MGC	54,839	80,073	Rnf complex C. sporogenes	RNF	83%

c00022_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	PFOR_II_pathway	SCFA	186,669	210,226	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00030_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	Pyruvate2acetate-formate	SCFA	1	13,638	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00044_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	TPP_AA_metabolism	Putative	126,044	152,125

c00067_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_82)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	porA	SCFA	19,154	41,997	porA C. sporogenes	POR	80%
Region 67.2	succinate2propionate	SCFA	113,866	138,574	Succinate to propionate B. theta	PRO	75%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_2); c00002_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_4); c00003_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_5); c00004_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_6); c00005_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_7); c00006_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_8); c00007_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_9); c00009_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_11); c00010_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_12); c00012_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_14); c00013_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_15); c00014_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_16); c00015_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_17); c00016_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_18); c00018_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_20); c00019_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_21); c00020_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_22); c00021_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_23); c00023_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_25); c00024_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_26); c00025_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_27); c00026_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_28); c00027_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_29); c00028_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_30); c00029_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_31); c00031_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_33); c00032_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_34); c00033_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_35); c00034_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_36); c00035_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_37); c00036_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_38); c00037_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_39); c00038_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_40); c00039_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_41); c00040_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_42); c00041_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_43); c00042_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_44); c00043_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_45); c00045_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_47); c00046_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_48); c00047_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_49); c00048_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_50); c00049_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_51); c00050_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_52); c00051_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_53); c00052_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_54); c00053_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_55); c00054_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_56); c00055_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_57); c00056_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_58); c00057_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_59); c00058_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_60); c00059_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_61); c00060_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_62); c00061_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_63); c00062_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_64); c00063_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_65); c00064_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_67); c00065_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_74); c00066_gnlPro.. (original name was: gnl|Prokka|FPDKCIJF_78)

Compact view

c00008_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 65,741 - 89,211 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00011_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 247,367 - 277,598 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00017_gnlPro.. - Region 1 - Rnf_complex

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Location: 54,839 - 80,073 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00022_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 186,669 - 210,226 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00030_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 13,638 nt. (total: 13,638 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00044_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 126,044 - 152,125 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00067_gnlPro.. - Region 1 - porA

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Location: 19,154 - 41,997 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00067_gnlPro.. - Region 2 - succinate2propionate

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Location: 113,866 - 138,574 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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