GCA_019129685.1 - 8 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	porA	SCFA	19,122	41,966	porA C. sporogenes	POR	80%
Region 2.2	succinate2propionate	SCFA	114,959	139,667	Succinate to propionate B. theta	PRO	75%

c00003_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Rnf_complex	E-MGC	1,729	26,931	Rnf complex C. sporogenes	RNF	83%

c00011_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Fumarate2succinate	SCFA	541,766	565,236	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00022_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_26)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	NADH_dehydrogenase_I	E-MGC	216,470	246,613	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00033_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Pyruvate2acetate-formate	SCFA	68,504	91,459	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00054_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_58)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	TPP_AA_metabolism	Putative	95,212	121,286

c00065_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_69)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	PFOR_II_pathway	SCFA	36,970	60,527	PFOR II pathway B. thetaiotaomicron	PFORII	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_5); c00004_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_8); c00005_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_9); c00006_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_10); c00007_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_11); c00008_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_12); c00009_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_13); c00010_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_14); c00012_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_16); c00013_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_17); c00014_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_18); c00015_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_19); c00016_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_20); c00017_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_21); c00018_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_22); c00019_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_23); c00020_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_24); c00021_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_25); c00023_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_27); c00024_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_28); c00025_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_29); c00026_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_30); c00027_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_31); c00028_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_32); c00029_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_33); c00030_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_34); c00031_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_35); c00032_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_36); c00034_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_38); c00035_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_39); c00036_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_40); c00037_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_41); c00038_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_42); c00039_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_43); c00040_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_44); c00041_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_45); c00042_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_46); c00043_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_47); c00044_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_48); c00045_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_49); c00046_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_50); c00047_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_51); c00048_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_52); c00049_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_53); c00050_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_54); c00051_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_55); c00052_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_56); c00053_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_57); c00055_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_59); c00056_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_60); c00057_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_61); c00058_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_62); c00059_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_63); c00060_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_64); c00061_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_65); c00062_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_66); c00063_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_67); c00064_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_68); c00066_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_70); c00067_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_71); c00068_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_80); c00069_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_90); c00070_gnlPro.. (original name was: gnl|Prokka|BEIOKNAF_98)

Compact view

c00002_gnlPro.. - Region 1 - porA

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Location: 19,122 - 41,966 nt. (total: 22,845 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00002_gnlPro.. - Region 2 - succinate2propionate

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Location: 114,959 - 139,667 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00003_gnlPro.. - Region 1 - Rnf_complex

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Location: 1,729 - 26,931 nt. (total: 25,203 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00011_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 541,766 - 565,236 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00022_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 216,470 - 246,613 nt. (total: 30,144 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00033_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 68,504 - 91,459 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00054_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 95,212 - 121,286 nt. (total: 26,075 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00065_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 36,970 - 60,527 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

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regulatory genes

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